Wall clock time and date at job start Tue Mar 31 2020 07:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47241 * 2 1 4 4 C 1.50695 * 109.47269 * 120.00450 * 2 1 3 5 5 O 1.21280 * 120.00244 * 94.56998 * 4 2 1 6 6 N 1.34772 * 119.99973 * 274.57559 * 4 2 1 7 7 C 1.44508 * 116.63081 * 3.35816 * 6 4 2 8 8 C 1.51632 * 112.65335 * 154.60645 * 7 6 4 9 9 C 1.51332 * 111.98291 * 42.76040 * 8 7 6 10 10 C 1.50707 * 113.54263 * 304.61314 * 9 8 7 11 11 H 1.09002 * 109.33253 * 169.06605 * 10 9 8 12 12 C 1.54178 * 110.50892 * 289.38897 * 10 9 8 13 13 N 1.46928 * 106.26811 * 151.09945 * 12 10 9 14 14 C 1.36930 * 125.38081 * 162.12495 * 13 12 10 15 15 H 1.07993 * 120.00304 * 0.02562 * 14 13 12 16 16 C 1.38815 * 120.00210 * 179.97438 * 14 13 12 17 17 N 1.31618 * 120.00046 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00140 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47175 * 60.00608 * 18 16 14 20 20 H 1.48507 * 109.47080 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47241 * 300.00002 * 18 16 14 22 22 C 1.46826 * 109.24293 * 342.15037 * 13 12 10 23 23 C 1.44099 * 116.63488 * 183.10868 * 6 4 2 24 24 H 1.09005 * 109.11013 * 73.86153 * 23 6 4 25 25 S 1.81406 * 109.46892 * 240.00117 * 2 1 3 26 26 C 1.81400 * 101.92199 * 60.00174 * 25 2 1 27 27 O 1.42096 * 108.57829 * 174.49023 * 25 2 1 28 28 O 1.42104 * 108.57786 * 305.51445 * 25 2 1 29 29 H 1.08998 * 109.47103 * 65.95148 * 1 2 3 30 30 H 1.08992 * 109.47145 * 185.95439 * 1 2 3 31 31 H 1.09003 * 109.46773 * 305.96036 * 1 2 3 32 32 H 1.08999 * 108.84817 * 275.42680 * 7 6 4 33 33 H 1.08995 * 108.84422 * 33.79132 * 7 6 4 34 34 H 1.08999 * 108.98056 * 163.40896 * 8 7 6 35 35 H 1.09003 * 108.98121 * 282.11459 * 8 7 6 36 36 H 1.09002 * 108.66456 * 65.66100 * 9 8 7 37 37 H 1.08997 * 108.66694 * 183.69390 * 9 8 7 38 38 H 1.09002 * 110.10055 * 270.29742 * 12 10 9 39 39 H 1.09000 * 110.09596 * 31.90152 * 12 10 9 40 40 H 0.96993 * 120.00802 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.83537 * 120.39853 * 22 13 12 42 42 H 1.08994 * 109.83958 * 241.30638 * 22 13 12 43 43 H 1.09002 * 109.47313 * 59.99881 * 26 25 2 44 44 H 1.08993 * 109.47531 * 179.97438 * 26 25 2 45 45 H 1.09004 * 109.46947 * 300.00390 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.3134 -1.8891 1.1778 6 7 2.1692 -0.0362 2.3892 7 6 1.7431 1.3447 2.3894 8 6 1.3499 1.8343 3.7695 9 6 2.3186 1.3664 4.8339 10 6 2.5025 -0.1291 4.8649 11 1 3.3451 -0.3757 5.5109 12 6 1.2317 -0.8186 5.4002 13 7 1.1900 -2.1475 4.7749 14 6 0.4440 -3.2080 5.2153 15 1 -0.1798 -3.1029 6.0906 16 6 0.4887 -4.4178 4.5362 17 7 1.2486 -4.5458 3.4691 18 14 -0.5295 -5.8642 5.1366 19 1 -1.9683 -5.4971 5.1209 20 1 -0.3061 -7.0308 4.2452 21 1 -0.1230 -6.2149 6.5212 22 6 2.0751 -2.1591 3.6035 23 6 2.7202 -0.7682 3.5014 24 1 3.7899 -0.9056 3.3434 25 16 2.1347 -0.8551 -1.4812 26 6 1.4229 0.1515 -2.8119 27 8 3.5496 -0.7331 -1.5285 28 8 1.5478 -2.1485 -1.5286 29 1 -0.3633 0.4188 -0.9384 30 1 -0.3633 -1.0220 0.1066 31 1 -0.3633 0.6035 0.8319 32 1 2.5576 1.9646 2.0146 33 1 0.8879 1.4492 1.7218 34 1 1.3266 2.9241 3.7657 35 1 0.3539 1.4609 4.0078 36 1 3.2869 1.8334 4.6539 37 1 1.9509 1.6912 5.8072 38 1 1.2870 -0.9166 6.4844 39 1 0.3481 -0.2451 5.1201 40 1 1.2802 -5.3912 2.9947 41 1 2.8461 -2.9191 3.7299 42 1 1.4955 -2.3662 2.7039 43 1 1.7894 1.1747 -2.7292 44 1 1.7159 -0.2620 -3.7768 45 1 0.3360 0.1472 -2.7291 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050077281.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:21 Heat of formation + Delta-G solvation = -46.839853 kcal Electronic energy + Delta-G solvation = -28908.080436 eV Core-core repulsion = 25055.088392 eV Total energy + Delta-G solvation = -3852.992043 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.78224 -37.95151 -36.91521 -35.88987 -35.62312 -33.71520 -32.99596 -31.96281 -29.76277 -29.43624 -27.32354 -25.66169 -24.94540 -23.87852 -22.23487 -21.10222 -19.75615 -18.61199 -17.93889 -17.50703 -16.82732 -16.58580 -16.15612 -15.82870 -15.47152 -15.11884 -14.71721 -14.50925 -14.03968 -13.86656 -13.75313 -13.48328 -13.42065 -13.36576 -12.94987 -12.63681 -12.41110 -12.22843 -12.05706 -11.93227 -11.84240 -11.63736 -11.34912 -11.04724 -11.02141 -10.93549 -10.77848 -10.66052 -10.47405 -10.38779 -10.25671 -10.03217 -9.89458 -9.57451 -9.07339 -8.40119 -8.03881 -6.62613 -5.50171 -2.87819 -0.12080 2.65896 2.81120 3.15197 3.49712 3.53237 3.56943 3.78927 3.94485 4.32169 4.43862 4.58474 4.62291 4.72602 4.82098 4.85741 4.93217 5.02147 5.15487 5.19916 5.31431 5.39527 5.45334 5.53379 5.66312 5.70198 5.78308 5.87868 5.94409 5.98795 6.06773 6.18882 6.20706 6.43605 6.59292 6.71895 6.76596 7.05759 7.49412 7.76619 7.88449 8.18533 8.37195 8.55553 9.38349 9.99341 10.63710 11.57821 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.011781 B = 0.005414 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.082402 B = 5170.833912 C = 6823.793545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.615 4.615 3 H 0.149 0.851 4 C 0.521 3.479 5 O -0.480 6.480 6 N -0.575 5.575 7 C 0.107 3.893 8 C -0.127 4.127 9 C -0.102 4.102 10 C -0.102 4.102 11 H 0.081 0.919 12 C 0.143 3.857 13 N -0.606 5.606 14 C -0.240 4.240 15 H 0.074 0.926 16 C -0.003 4.003 17 N -0.904 5.904 18 Si 0.907 3.093 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.286 1.286 22 C 0.159 3.841 23 C 0.127 3.873 24 H 0.061 0.939 25 S 2.445 3.555 26 C -0.665 4.665 27 O -0.932 6.932 28 O -0.903 6.903 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.031 0.969 39 H 0.013 0.987 40 H 0.255 0.745 41 H 0.053 0.947 42 H 0.092 0.908 43 H 0.127 0.873 44 H 0.131 0.869 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.197 19.177 -8.852 21.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.724 4.724 3 H 0.167 0.833 4 C 0.305 3.695 5 O -0.353 6.353 6 N -0.309 5.309 7 C -0.016 4.016 8 C -0.165 4.165 9 C -0.140 4.140 10 C -0.122 4.122 11 H 0.100 0.900 12 C 0.016 3.984 13 N -0.333 5.333 14 C -0.368 4.368 15 H 0.092 0.908 16 C -0.201 4.201 17 N -0.550 5.550 18 Si 0.738 3.262 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.213 1.213 22 C 0.035 3.965 23 C 0.023 3.977 24 H 0.079 0.921 25 S 2.622 3.378 26 C -0.814 4.814 27 O -0.929 6.929 28 O -0.900 6.900 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.049 0.951 39 H 0.031 0.969 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.109 0.891 43 H 0.146 0.854 44 H 0.149 0.851 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.480 17.582 -8.942 19.731 hybrid contribution -1.042 0.263 0.456 1.167 sum -0.562 17.845 -8.486 19.768 Atomic orbital electron populations 1.21656 0.87823 1.06055 1.04020 1.30726 1.08916 1.14989 1.17803 0.83345 1.19166 0.79702 0.86851 0.83810 1.90996 1.47587 1.13346 1.83415 1.46509 1.63041 1.10999 1.10315 1.20955 0.99485 0.82419 0.98745 1.21114 1.00920 1.00408 0.94054 1.20489 0.99200 0.95379 0.98949 1.21322 1.00628 0.94221 0.96004 0.90040 1.21363 0.93448 0.87762 0.95816 1.44385 1.51819 1.07123 1.30021 1.18881 1.19759 0.88900 1.09298 0.90817 1.24856 0.99861 0.97748 0.97661 1.69979 1.41049 1.24815 1.19142 0.86291 0.79747 0.82539 0.77635 1.21354 1.21583 1.21315 1.21914 0.94472 0.87964 0.92135 1.21227 0.97190 0.94774 0.84465 0.92089 1.07580 0.76033 0.76841 0.77372 1.30442 1.14366 1.16617 1.19959 1.93579 1.26884 1.86824 1.85600 1.93636 1.78867 1.32827 1.84687 0.90621 0.89119 0.89747 0.92657 0.90517 0.90766 0.91053 0.92411 0.91437 0.95057 0.96910 0.93472 0.92851 0.89079 0.85440 0.85089 0.85058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.79 37.16 0.33 -1.08 16 2 C -0.62 -7.49 2.25 -27.88 -0.06 -7.56 16 3 H 0.15 1.10 6.90 -51.93 -0.36 0.75 16 4 C 0.52 9.64 6.14 -10.99 -0.07 9.58 16 5 O -0.48 -11.57 12.53 -4.08 -0.05 -11.62 16 6 N -0.58 -9.81 3.09 -170.34 -0.53 -10.33 16 7 C 0.11 1.26 5.21 -5.80 -0.03 1.23 16 8 C -0.13 -1.41 5.83 -28.27 -0.16 -1.58 16 9 C -0.10 -1.28 5.17 -28.72 -0.15 -1.43 16 10 C -0.10 -1.76 3.05 -91.58 -0.28 -2.04 16 11 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 12 C 0.14 2.99 6.65 -3.19 -0.02 2.97 16 13 N -0.61 -16.19 3.39 -171.51 -0.58 -16.77 16 14 C -0.24 -7.00 10.26 -15.06 -0.15 -7.15 16 15 H 0.07 2.06 7.83 -52.49 -0.41 1.65 16 16 C 0.00 -0.10 5.48 -17.43 -0.10 -0.20 16 17 N -0.90 -28.60 10.26 55.49 0.57 -28.03 16 18 Si 0.91 23.20 29.55 -169.99 -5.02 18.18 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 20 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 C 0.16 4.19 4.13 -3.53 -0.01 4.17 16 23 C 0.13 2.55 3.16 -69.30 -0.22 2.33 16 24 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 25 S 2.45 32.47 4.40 -107.50 -0.47 32.00 16 26 C -0.67 -4.39 10.17 101.05 1.03 -3.36 16 27 O -0.93 -15.48 18.10 -57.83 -1.05 -16.53 16 28 O -0.90 -16.54 17.42 -62.85 -1.09 -17.63 16 29 H 0.08 0.42 6.28 -51.93 -0.33 0.09 16 30 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.08 0.78 6.30 -51.93 -0.33 0.46 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.73 4.59 -51.93 -0.24 0.49 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.89 7.00 -51.93 -0.36 0.53 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.01 0.27 6.69 -51.93 -0.35 -0.07 16 40 H 0.25 7.95 8.31 -40.82 -0.34 7.61 16 41 H 0.05 1.60 7.37 -51.93 -0.38 1.22 16 42 H 0.09 2.67 4.39 -51.99 -0.23 2.44 16 43 H 0.13 0.49 8.14 -51.92 -0.42 0.07 16 44 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.13 0.60 6.73 -51.92 -0.35 0.25 16 LS Contribution 350.13 15.07 5.28 5.28 Total: -1.00 -41.27 350.13 -9.55 -50.81 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -6.69 Total: -1.23 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: 0.10 Total: -4.11 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.54 Total: -55.14 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -2.19 Total: -45.78 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.02 Total: 18.18 kcal Atomic # 16 Polarization: 32.47 SS G_CDS: -0.47 Total: 32.00 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -41.27 -9.55 -50.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050077281.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.974 kcal (2) G-P(sol) polarization free energy of solvation -41.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds