Wall clock time and date at job start Tue Mar 31 2020 07:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46794 * 2 1 4 4 C 1.50697 * 109.47317 * 239.99528 * 2 1 3 5 5 O 1.21278 * 119.99729 * 265.00474 * 4 2 1 6 6 N 1.34771 * 119.99877 * 84.99830 * 4 2 1 7 7 C 1.47669 * 134.45788 * 179.97438 * 6 4 2 8 8 C 1.53504 * 85.98130 * 204.33978 * 7 6 4 9 9 C 1.47674 * 134.45801 * 0.03387 * 6 4 2 10 10 C 1.52669 * 113.57533 * 91.01368 * 8 7 6 11 11 C 1.53338 * 109.11107 * 73.81649 * 10 8 7 12 12 N 1.46876 * 108.76332 * 52.40793 * 11 10 8 13 13 C 1.36939 * 120.46786 * 124.47717 * 12 11 10 14 14 H 1.07997 * 119.99771 * 331.55486 * 13 12 11 15 15 C 1.38806 * 119.99809 * 151.83874 * 13 12 11 16 16 N 1.31611 * 120.00492 * 342.23050 * 15 13 12 17 17 Si 1.86806 * 119.99547 * 162.23005 * 15 13 12 18 18 H 1.48494 * 109.47063 * 60.00134 * 17 15 13 19 19 H 1.48507 * 109.47121 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47395 * 300.00017 * 17 15 13 21 21 C 1.46882 * 119.06608 * 304.74564 * 12 11 10 22 22 C 1.52674 * 113.56844 * 222.23608 * 8 7 6 23 23 S 1.81403 * 109.46728 * 119.99487 * 2 1 3 24 24 C 1.81403 * 101.92322 * 305.00190 * 23 2 1 25 25 O 1.42095 * 108.57968 * 59.48877 * 23 2 1 26 26 O 1.42102 * 108.57722 * 190.51338 * 23 2 1 27 27 H 1.09007 * 109.47425 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47621 * 300.00316 * 1 2 3 29 29 H 1.09003 * 109.47160 * 60.00749 * 1 2 3 30 30 H 1.08999 * 113.78964 * 90.07118 * 7 6 4 31 31 H 1.09003 * 113.89653 * 318.61910 * 7 6 4 32 32 H 1.09000 * 113.78662 * 41.39042 * 9 6 4 33 33 H 1.08997 * 113.78772 * 269.92482 * 9 6 4 34 34 H 1.09000 * 109.53154 * 313.92761 * 10 8 7 35 35 H 1.09000 * 109.59592 * 193.74245 * 10 8 7 36 36 H 1.09007 * 109.58866 * 292.62406 * 11 10 8 37 37 H 1.08998 * 109.58744 * 172.19420 * 11 10 8 38 38 H 0.96997 * 120.00262 * 179.97438 * 16 15 13 39 39 H 1.09002 * 109.59244 * 175.04379 * 21 12 11 40 40 H 1.09007 * 109.59079 * 295.47432 * 21 12 11 41 41 H 1.09000 * 109.52839 * 46.07323 * 22 8 7 42 42 H 1.08996 * 109.53572 * 166.22672 * 22 8 7 43 43 H 1.09003 * 109.47119 * 59.99944 * 24 23 2 44 44 H 1.08994 * 109.47032 * 180.02562 * 24 23 2 45 45 H 1.09005 * 109.47038 * 300.00179 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.3207 -1.8872 -1.1758 6 7 2.1611 -0.0382 -2.3913 7 6 2.6079 -0.3996 -3.7516 8 6 2.9404 1.0894 -3.9211 9 6 1.9128 1.3552 -2.8127 10 6 4.3716 1.4443 -3.5256 11 6 5.3325 0.9323 -4.6054 12 7 4.8810 1.4268 -5.9126 13 6 5.7285 2.1441 -6.7141 14 1 6.5163 2.7367 -6.2732 15 6 5.5713 2.1140 -8.0929 16 7 4.8642 1.1561 -8.6540 17 14 6.3634 3.4331 -9.1522 18 1 7.8354 3.4059 -8.9583 19 1 6.0481 3.1765 -10.5806 20 1 5.8371 4.7651 -8.7601 21 6 3.5057 1.1463 -6.3455 22 6 2.5346 1.6547 -5.2801 23 16 2.1346 -0.8550 1.4813 24 6 1.2996 0.0579 2.8080 25 8 1.6407 -2.1873 1.4682 26 8 3.5341 -0.6349 1.5915 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.8041 -0.7473 -4.4006 31 1 3.4821 -1.0503 -3.7710 32 1 2.2348 2.0989 -2.0838 33 1 0.9023 1.5293 -3.1824 34 1 4.6128 0.9760 -2.5714 35 1 4.4683 2.5263 -3.4352 36 1 5.3327 -0.1578 -4.6072 37 1 6.3386 1.2997 -4.4032 38 1 4.7541 1.1354 -9.6175 39 1 3.3088 1.6546 -7.2894 40 1 3.3745 0.0716 -6.4724 41 1 1.5228 1.3298 -5.5224 42 1 2.5697 2.7436 -5.2471 43 1 0.2200 -0.0208 2.6794 44 1 1.5826 -0.3633 3.7726 45 1 1.5947 1.1065 2.7690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050565554.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:46 Heat of formation + Delta-G solvation = -40.423360 kcal Electronic energy + Delta-G solvation = -27463.238690 eV Core-core repulsion = 23610.524887 eV Total energy + Delta-G solvation = -3852.713803 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.84443 -38.69822 -37.21253 -36.20501 -35.92365 -33.98060 -32.44895 -30.68641 -29.94980 -29.69629 -27.27278 -26.47592 -24.94128 -24.04850 -22.42714 -21.01640 -19.79496 -18.83913 -18.11252 -17.63467 -17.20401 -16.55462 -16.44325 -16.02840 -15.60493 -15.30177 -14.86360 -14.58418 -13.99722 -13.86388 -13.67613 -13.65987 -13.56379 -13.41681 -13.15170 -12.85624 -12.61619 -12.45920 -12.26800 -12.23581 -12.16456 -11.97650 -11.73305 -11.47900 -11.32215 -11.09784 -10.87812 -10.74704 -10.54904 -10.39843 -10.21849 -10.07397 -9.89160 -9.68154 -9.42863 -8.73478 -8.48516 -6.69798 -5.82227 -3.24852 -0.41772 2.30843 2.41141 2.60668 3.36402 3.42503 3.42979 3.43367 3.65724 3.93940 4.15209 4.36465 4.46159 4.48053 4.51294 4.64080 4.84192 4.98022 5.07356 5.09881 5.21221 5.31180 5.36892 5.38237 5.50627 5.51433 5.57867 5.66000 5.84993 6.00379 6.01326 6.21620 6.38632 6.50804 6.54647 6.60682 6.77149 6.92098 7.27320 7.57993 7.60384 7.76885 7.86545 8.42614 9.18408 9.81681 10.37841 11.26149 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.031407 B = 0.002703 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.305657 B =10357.654037 C =10538.195529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.611 4.611 3 H 0.152 0.848 4 C 0.558 3.442 5 O -0.528 6.528 6 N -0.627 5.627 7 C 0.118 3.882 8 C -0.074 4.074 9 C 0.099 3.901 10 C -0.111 4.111 11 C 0.146 3.854 12 N -0.590 5.590 13 C -0.254 4.254 14 H 0.065 0.935 15 C 0.004 3.996 16 N -0.902 5.902 17 Si 0.902 3.098 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.284 1.284 21 C 0.170 3.830 22 C -0.126 4.126 23 S 2.446 3.554 24 C -0.662 4.662 25 O -0.910 6.910 26 O -0.928 6.928 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.020 0.980 37 H 0.057 0.943 38 H 0.255 0.745 39 H 0.090 0.910 40 H 0.018 0.982 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.803 2.820 19.495 23.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.719 4.719 3 H 0.170 0.830 4 C 0.345 3.655 5 O -0.406 6.406 6 N -0.361 5.361 7 C -0.003 4.003 8 C -0.075 4.075 9 C -0.023 4.023 10 C -0.150 4.150 11 C 0.020 3.980 12 N -0.313 5.313 13 C -0.384 4.384 14 H 0.082 0.918 15 C -0.195 4.195 16 N -0.546 5.546 17 Si 0.731 3.269 18 H -0.209 1.209 19 H -0.217 1.217 20 H -0.211 1.211 21 C 0.044 3.956 22 C -0.166 4.166 23 S 2.622 3.378 24 C -0.811 4.811 25 O -0.907 6.907 26 O -0.925 6.925 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.037 0.963 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.108 0.892 40 H 0.036 0.964 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.150 0.850 44 H 0.151 0.849 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.104 1.343 19.553 23.036 hybrid contribution -0.307 1.567 -0.631 1.717 sum -12.411 2.911 18.923 22.816 Atomic orbital electron populations 1.21601 0.87760 1.05046 1.04936 1.30635 1.08761 1.15475 1.17015 0.82999 1.18715 0.78093 0.85860 0.82868 1.90884 1.50686 1.14617 1.84405 1.49988 1.64182 1.13186 1.08763 1.23395 0.99638 0.98091 0.79170 1.21996 0.95718 0.94297 0.95491 1.23571 1.00065 0.82668 0.96008 1.21806 0.93062 1.01208 0.98957 1.20890 0.95395 0.95824 0.85937 1.43996 1.08691 1.62658 1.15926 1.19139 1.11765 1.20094 0.87401 0.91768 1.25029 0.99927 0.97581 0.96969 1.70017 1.43954 1.30693 1.09917 0.86386 0.79203 0.81862 0.79419 1.20883 1.21655 1.21053 1.20682 0.82120 0.97345 0.95421 1.22063 0.99383 1.00787 0.94371 1.07562 0.76191 0.76666 0.77364 1.30407 1.15204 1.15860 1.19621 1.93602 1.81575 1.30557 1.84942 1.93610 1.27483 1.86341 1.85108 0.89776 0.90104 0.89853 0.89421 0.89480 0.90184 0.89412 0.92768 0.91574 0.96255 0.92485 0.93544 0.89184 0.96351 0.92783 0.91871 0.85006 0.84861 0.85173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 8.88 37.16 0.33 -0.50 16 2 C -0.61 -5.56 2.94 -27.88 -0.08 -5.64 16 3 H 0.15 0.88 7.87 -51.92 -0.41 0.47 16 4 C 0.56 8.11 7.18 -10.99 -0.08 8.03 16 5 O -0.53 -10.00 16.21 -9.37 -0.15 -10.15 16 6 N -0.63 -8.56 3.44 -180.22 -0.62 -9.19 16 7 C 0.12 1.79 7.62 -3.15 -0.02 1.76 16 8 C -0.07 -1.08 0.77 -154.43 -0.12 -1.20 16 9 C 0.10 1.09 7.62 -3.16 -0.02 1.07 16 10 C -0.11 -1.80 5.21 -26.73 -0.14 -1.94 16 11 C 0.15 2.96 6.38 -3.66 -0.02 2.93 16 12 N -0.59 -14.03 2.97 -172.50 -0.51 -14.54 16 13 C -0.25 -6.74 9.56 -15.06 -0.14 -6.89 16 14 H 0.06 1.68 7.89 -52.49 -0.41 1.26 16 15 C 0.00 0.10 4.89 -17.44 -0.09 0.01 16 16 N -0.90 -25.42 11.22 55.49 0.62 -24.80 16 17 Si 0.90 21.13 29.59 -169.99 -5.03 16.10 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 C 0.17 3.73 5.21 -3.91 -0.02 3.71 16 22 C -0.13 -2.06 5.24 -26.97 -0.14 -2.20 16 23 S 2.45 25.01 4.52 -107.50 -0.49 24.53 16 24 C -0.66 -2.78 10.01 101.05 1.01 -1.77 16 25 O -0.91 -13.01 17.21 -64.29 -1.11 -14.12 16 26 O -0.93 -13.21 18.10 -57.83 -1.05 -14.26 16 27 H 0.08 0.61 8.14 -51.92 -0.42 0.18 16 28 H 0.08 0.18 6.39 -51.93 -0.33 -0.15 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.09 1.23 8.07 -51.93 -0.42 0.81 16 31 H 0.09 1.47 7.41 -51.93 -0.38 1.09 16 32 H 0.08 0.73 7.97 -51.93 -0.41 0.31 16 33 H 0.09 0.79 8.09 -51.93 -0.42 0.37 16 34 H 0.05 0.84 8.01 -51.93 -0.42 0.42 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.02 0.41 7.49 -51.92 -0.39 0.02 16 37 H 0.06 1.15 7.92 -51.93 -0.41 0.74 16 38 H 0.25 6.97 8.31 -40.82 -0.34 6.64 16 39 H 0.09 2.25 5.98 -51.93 -0.31 1.94 16 40 H 0.02 0.43 8.08 -51.93 -0.42 0.01 16 41 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.13 0.26 6.77 -51.92 -0.35 -0.09 16 44 H 0.13 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.13 0.26 8.14 -51.92 -0.42 -0.16 16 LS Contribution 369.32 15.07 5.57 5.57 Total: -1.00 -37.26 369.32 -9.49 -46.75 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -7.18 Total: -3.27 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 0.46 Total: -2.62 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: -0.51 Total: -48.52 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -2.30 Total: -38.52 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Atomic # 16 Polarization: 25.01 SS G_CDS: -0.49 Total: 24.53 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.26 -9.49 -46.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050565554.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.325 kcal (2) G-P(sol) polarization free energy of solvation -37.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds