Wall clock time and date at job start Tue Mar 31 2020 07:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47310 * 2 1 4 4 C 1.50694 * 109.47192 * 120.00606 * 2 1 3 5 5 O 1.21278 * 120.00445 * 99.99672 * 4 2 1 6 6 N 1.34779 * 119.99962 * 279.72114 * 4 2 1 7 7 C 1.47172 * 135.99700 * 359.90661 * 6 4 2 8 8 C 1.52640 * 87.96747 * 206.71702 * 7 6 4 9 9 C 1.47161 * 136.00306 * 180.26859 * 6 4 2 10 10 C 1.52551 * 113.89363 * 88.17657 * 8 7 6 11 11 C 1.53358 * 109.13072 * 190.30359 * 10 8 7 12 12 N 1.46891 * 108.74900 * 307.75631 * 11 10 8 13 13 C 1.36939 * 120.46230 * 235.60161 * 12 11 10 14 14 H 1.07997 * 119.99462 * 149.72821 * 13 12 11 15 15 C 1.38815 * 119.99898 * 329.72781 * 13 12 11 16 16 N 1.31620 * 119.99840 * 158.00667 * 15 13 12 17 17 Si 1.86794 * 120.00132 * 338.00574 * 15 13 12 18 18 H 1.48510 * 109.47134 * 87.67198 * 17 15 13 19 19 H 1.48494 * 109.47316 * 207.66924 * 17 15 13 20 20 H 1.48493 * 109.47303 * 327.67087 * 17 15 13 21 21 C 1.46887 * 119.07321 * 55.62796 * 12 11 10 22 22 C 1.52559 * 114.26215 * 220.76429 * 8 7 6 23 23 S 1.81405 * 109.46943 * 240.00114 * 2 1 3 24 24 C 1.81401 * 101.91939 * 60.00140 * 23 2 1 25 25 O 1.42101 * 108.57752 * 174.48709 * 23 2 1 26 26 O 1.42100 * 108.57902 * 305.51512 * 23 2 1 27 27 H 1.08995 * 109.47872 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46910 * 299.99776 * 1 2 3 29 29 H 1.09008 * 109.47059 * 59.99390 * 1 2 3 30 30 H 1.08995 * 113.49037 * 321.41698 * 7 6 4 31 31 H 1.09009 * 113.48512 * 91.92098 * 7 6 4 32 32 H 1.08995 * 113.49463 * 268.08752 * 9 6 4 33 33 H 1.09004 * 113.48568 * 38.53819 * 9 6 4 34 34 H 1.08996 * 109.53121 * 310.19854 * 10 8 7 35 35 H 1.09001 * 109.53040 * 70.40781 * 10 8 7 36 36 H 1.09003 * 109.59436 * 187.97752 * 11 10 8 37 37 H 1.09000 * 109.59236 * 67.53468 * 11 10 8 38 38 H 0.96997 * 120.00147 * 179.97438 * 16 15 13 39 39 H 1.08998 * 109.59450 * 184.59335 * 21 12 11 40 40 H 1.08997 * 109.59893 * 64.13991 * 21 12 11 41 41 H 1.09002 * 109.52584 * 289.75840 * 22 8 7 42 42 H 1.08996 * 109.52950 * 49.89124 * 22 8 7 43 43 H 1.09006 * 109.47356 * 59.99978 * 24 23 2 44 44 H 1.09002 * 109.46838 * 179.97438 * 24 23 2 45 45 H 1.08997 * 109.47595 * 300.00079 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2303 5 8 2.4064 -1.8617 1.1556 6 7 2.0711 -0.0648 2.4128 7 6 1.7266 1.2822 2.8951 8 6 2.7638 1.0930 3.9990 9 6 2.4825 -0.3954 3.7865 10 6 4.1729 1.5228 3.6031 11 6 5.1618 1.0539 4.6774 12 7 4.6867 1.5132 5.9892 13 6 5.4956 2.2696 6.7947 14 1 5.0616 2.9911 7.4710 15 6 6.8734 2.1089 6.7419 16 7 7.6651 3.0763 7.1539 17 14 7.6039 0.5197 6.0860 18 1 7.7586 0.6172 4.6122 19 1 8.9324 0.2914 6.7089 20 1 6.7017 -0.6128 6.4152 21 6 3.3320 1.1495 6.4252 22 6 2.3299 1.6193 5.3636 23 16 2.1346 -0.8551 -1.4812 24 6 1.4228 0.1516 -2.8118 25 8 3.5496 -0.7330 -1.5285 26 8 1.5478 -2.1484 -1.5286 27 1 -0.3635 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 1.9828 2.0743 2.1916 31 1 0.7053 1.3623 3.2677 32 1 1.6691 -0.7763 4.4039 33 1 3.3757 -1.0184 3.8344 34 1 4.4353 1.0735 2.6453 35 1 4.2129 2.6089 3.5203 36 1 6.1466 1.4761 4.4770 37 1 5.2201 -0.0345 4.6704 38 1 8.6278 2.9638 7.1174 39 1 3.1114 1.6346 7.3760 40 1 3.2629 0.0677 6.5396 41 1 2.3052 2.7089 5.3429 42 1 1.3377 1.2369 5.6030 43 1 1.7893 1.1748 -2.7291 44 1 1.7158 -0.2621 -3.7768 45 1 0.3360 0.1472 -2.7292 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050565555.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:51 Heat of formation + Delta-G solvation = -32.485066 kcal Electronic energy + Delta-G solvation = -27642.987163 eV Core-core repulsion = 23790.617590 eV Total energy + Delta-G solvation = -3852.369573 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.12957 -38.88509 -37.25473 -36.32302 -36.18681 -34.05012 -32.52343 -30.76479 -30.58236 -29.87737 -27.57729 -26.43165 -25.03424 -23.93820 -23.00029 -21.24311 -19.92347 -18.90470 -18.32765 -17.71563 -17.27242 -16.61469 -16.44321 -16.14622 -15.83437 -15.42611 -15.16486 -14.74566 -14.17620 -13.99643 -13.84082 -13.69899 -13.63601 -13.48964 -13.26049 -13.08206 -12.76848 -12.50514 -12.44961 -12.27853 -12.19908 -12.16040 -11.86093 -11.79510 -11.67130 -11.35356 -10.92882 -10.80114 -10.64865 -10.52009 -10.34526 -10.08127 -9.88780 -9.71937 -9.51079 -8.88029 -8.58563 -6.97421 -5.99261 -3.36066 -0.45722 2.22611 2.36661 2.49215 3.33665 3.38911 3.49962 3.53281 3.61648 3.88494 4.10904 4.27686 4.33884 4.43272 4.52220 4.60474 4.75115 4.83065 4.88969 5.02552 5.04977 5.17896 5.22756 5.23280 5.30605 5.37003 5.46217 5.50577 5.68072 5.78195 5.82148 5.97418 6.09945 6.22264 6.27659 6.37640 6.56992 6.62032 6.67020 6.86020 7.49015 7.75063 7.96135 8.30896 8.92143 9.69393 10.07745 11.16631 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.020221 B = 0.003290 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.377857 B = 8507.387922 C = 9151.093763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.611 4.611 3 H 0.154 0.846 4 C 0.569 3.431 5 O -0.529 6.529 6 N -0.631 5.631 7 C 0.101 3.899 8 C -0.078 4.078 9 C 0.111 3.889 10 C -0.110 4.110 11 C 0.129 3.871 12 N -0.604 5.604 13 C -0.264 4.264 14 H 0.084 0.916 15 C 0.029 3.971 16 N -0.905 5.905 17 Si 0.877 3.123 18 H -0.285 1.285 19 H -0.302 1.302 20 H -0.272 1.272 21 C 0.148 3.852 22 C -0.116 4.116 23 S 2.448 3.552 24 C -0.662 4.662 25 O -0.925 6.925 26 O -0.913 6.913 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.023 0.977 38 H 0.263 0.737 39 H 0.066 0.934 40 H 0.023 0.977 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.130 0.870 44 H 0.133 0.867 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.049 -1.303 -16.823 25.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.719 4.719 3 H 0.172 0.828 4 C 0.356 3.644 5 O -0.407 6.407 6 N -0.364 5.364 7 C -0.022 4.022 8 C -0.079 4.079 9 C -0.010 4.010 10 C -0.149 4.149 11 C 0.003 3.997 12 N -0.328 5.328 13 C -0.392 4.392 14 H 0.102 0.898 15 C -0.171 4.171 16 N -0.547 5.547 17 Si 0.707 3.293 18 H -0.213 1.213 19 H -0.230 1.230 20 H -0.197 1.197 21 C 0.022 3.978 22 C -0.156 4.156 23 S 2.624 3.376 24 C -0.811 4.811 25 O -0.922 6.922 26 O -0.910 6.910 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.041 0.959 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.041 0.959 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.149 0.851 44 H 0.152 0.848 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -18.155 -2.707 -17.046 25.050 hybrid contribution -0.026 0.068 -0.354 0.361 sum -18.181 -2.639 -17.400 25.304 Atomic orbital electron populations 1.21587 0.87681 1.05093 1.04940 1.30672 1.08850 1.15622 1.16779 0.82795 1.18549 0.78214 0.85310 0.82324 1.90877 1.48747 1.16341 1.84701 1.49449 1.63359 1.16257 1.07382 1.23266 0.99636 0.84001 0.95286 1.21677 0.96100 0.94613 0.95520 1.23207 1.00438 0.98083 0.79321 1.21757 0.92619 1.01654 0.98872 1.21343 0.96938 0.96410 0.84979 1.44328 1.12566 1.61537 1.14324 1.18872 0.87669 1.13504 1.19192 0.89845 1.25337 0.96145 0.97302 0.98304 1.69850 1.03745 1.30975 1.50136 0.87055 0.78021 0.86460 0.77803 1.21252 1.22959 1.19744 1.20929 0.84726 0.96820 0.95329 1.21877 0.98625 1.01506 0.93593 1.07511 0.76054 0.76701 0.77300 1.30402 1.14218 1.16782 1.19672 1.93616 1.26620 1.86632 1.85306 1.93590 1.79171 1.33307 1.84964 0.89725 0.89867 0.90099 0.90292 0.89324 0.89382 0.89874 0.92529 0.90808 0.90495 0.95875 0.92692 0.91547 0.95904 0.91002 0.92193 0.85106 0.84812 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.76 8.92 37.16 0.33 -0.43 16 2 C -0.61 -5.35 2.93 -27.89 -0.08 -5.44 16 3 H 0.15 0.84 8.14 -51.93 -0.42 0.41 16 4 C 0.57 8.01 7.25 -10.99 -0.08 7.93 16 5 O -0.53 -9.82 16.42 -3.35 -0.06 -9.88 16 6 N -0.63 -8.11 3.46 -185.30 -0.64 -8.75 16 7 C 0.10 1.00 7.56 -8.36 -0.06 0.94 16 8 C -0.08 -1.04 0.83 -155.17 -0.13 -1.17 16 9 C 0.11 1.52 7.56 -8.20 -0.06 1.46 16 10 C -0.11 -1.82 5.25 -26.78 -0.14 -1.96 16 11 C 0.13 2.72 4.14 -3.64 -0.02 2.71 16 12 N -0.60 -13.55 2.68 -172.18 -0.46 -14.01 16 13 C -0.26 -7.12 9.97 -15.06 -0.15 -7.27 16 14 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 15 C 0.03 0.82 5.17 -17.43 -0.09 0.73 16 16 N -0.90 -27.29 13.97 55.49 0.78 -26.52 16 17 Si 0.88 22.35 24.56 -169.99 -4.18 18.18 16 18 H -0.29 -7.06 6.44 56.52 0.36 -6.69 16 19 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 20 H -0.27 -6.91 7.11 56.52 0.40 -6.50 16 21 C 0.15 2.62 6.42 -3.65 -0.02 2.60 16 22 C -0.12 -1.55 5.31 -26.77 -0.14 -1.70 16 23 S 2.45 24.77 4.32 -107.50 -0.46 24.30 16 24 C -0.66 -2.72 10.17 101.05 1.03 -1.69 16 25 O -0.92 -13.48 18.10 -57.83 -1.05 -14.52 16 26 O -0.91 -12.64 17.40 -62.66 -1.09 -13.73 16 27 H 0.08 0.58 8.06 -51.93 -0.42 0.16 16 28 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.15 6.56 -51.92 -0.34 -0.19 16 30 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 31 H 0.09 0.67 8.09 -51.92 -0.42 0.25 16 32 H 0.09 1.03 8.06 -51.93 -0.42 0.61 16 33 H 0.08 1.32 7.53 -51.93 -0.39 0.93 16 34 H 0.06 0.91 7.95 -51.93 -0.41 0.50 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.08 1.82 4.66 -51.93 -0.24 1.58 16 37 H 0.02 0.50 6.93 -51.93 -0.36 0.14 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.07 1.18 7.92 -51.93 -0.41 0.77 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 43 H 0.13 0.27 8.14 -51.92 -0.42 -0.15 16 44 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16 45 H 0.13 0.22 6.87 -51.93 -0.36 -0.13 16 LS Contribution 365.24 15.07 5.50 5.50 Total: -1.00 -39.01 365.24 -8.44 -47.45 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -7.17 Total: -4.72 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 0.38 Total: -3.30 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.33 Total: -49.28 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -2.19 Total: -38.13 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.18 Total: 18.18 kcal Atomic # 16 Polarization: 24.77 SS G_CDS: -0.46 Total: 24.30 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -39.01 -8.44 -47.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050565555.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.961 kcal (2) G-P(sol) polarization free energy of solvation -39.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds