Wall clock time and date at job start Tue Mar 31 2020 06:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 115.56433 * 2 1 4 4 C 1.52997 * 117.49797 * 214.30465 * 2 1 3 5 5 C 1.53000 * 60.00347 * 252.51337 * 4 2 1 6 6 H 1.09004 * 117.49237 * 107.48843 * 5 4 2 7 7 C 1.50696 * 117.50175 * 252.51187 * 5 4 2 8 8 O 1.21279 * 120.00205 * 68.61876 * 7 5 4 9 9 N 1.34777 * 119.99769 * 248.62488 * 7 5 4 10 10 C 1.46492 * 120.00324 * 359.97438 * 9 7 5 11 11 C 1.53006 * 109.47072 * 90.00137 * 10 9 7 12 12 O 1.42894 * 109.46664 * 65.00300 * 11 10 9 13 13 C 1.46499 * 119.99839 * 179.97438 * 9 7 5 14 14 C 1.53007 * 109.47446 * 89.99635 * 13 9 7 15 15 N 1.46496 * 109.47074 * 179.97438 * 14 13 9 16 16 C 1.34785 * 119.99759 * 179.97438 * 15 14 13 17 17 O 1.21286 * 119.99744 * 0.02562 * 16 15 14 18 18 C 1.50696 * 120.00163 * 180.02562 * 16 15 14 19 19 S 1.80996 * 109.47234 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00036 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00361 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00088 * 179.97438 * 20 19 18 23 23 N 1.31635 * 119.99881 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00143 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47267 * 90.00080 * 24 22 20 26 26 H 1.48505 * 109.47259 * 210.00230 * 24 22 20 27 27 H 1.48504 * 109.47192 * 330.00037 * 24 22 20 28 28 H 1.08998 * 109.47374 * 274.31326 * 1 2 3 29 29 H 1.08999 * 109.47059 * 34.31402 * 1 2 3 30 30 H 1.08995 * 109.47306 * 154.31008 * 1 2 3 31 31 H 1.09002 * 117.49910 * 145.02477 * 4 2 1 32 32 H 1.09002 * 117.49884 * 0.02562 * 4 2 1 33 33 H 1.08998 * 109.47745 * 210.00370 * 10 9 7 34 34 H 1.09001 * 109.47138 * 330.00277 * 10 9 7 35 35 H 1.08995 * 109.46729 * 185.00158 * 11 10 9 36 36 H 1.08996 * 109.47044 * 305.00306 * 11 10 9 37 37 H 0.96704 * 114.00030 * 179.97438 * 12 11 10 38 38 H 1.09000 * 109.47106 * 209.99697 * 13 9 7 39 39 H 1.09004 * 109.47125 * 330.00109 * 13 9 7 40 40 H 1.09000 * 109.47019 * 300.00115 * 14 13 9 41 41 H 1.08998 * 109.46598 * 59.99676 * 14 13 9 42 42 H 0.96997 * 120.00627 * 0.02562 * 15 14 13 43 43 H 1.09000 * 109.47029 * 300.00111 * 18 16 15 44 44 H 1.09007 * 109.46966 * 60.00009 * 18 16 15 45 45 H 0.97000 * 119.99584 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1211 -0.7649 5 6 2.2364 -1.1210 0.7651 6 1 1.6110 -1.8585 1.2684 7 6 3.5291 -0.7811 1.4610 8 8 3.9717 0.3464 1.4014 9 7 4.1935 -1.7303 2.1495 10 6 3.6588 -3.0922 2.2220 11 6 4.2058 -3.9176 1.0555 12 8 5.6209 -4.0592 1.1947 13 6 5.4506 -1.4001 2.8256 14 6 5.1551 -0.9337 4.2526 15 7 6.4122 -0.6041 4.9287 16 6 6.3972 -0.1675 6.2038 17 8 5.3430 -0.0480 6.7915 18 6 7.6903 0.1721 6.8992 19 16 7.3407 0.7236 8.5873 20 6 8.9794 1.0440 9.1500 21 1 9.8185 0.8825 8.4895 22 6 9.1919 1.5041 10.4421 23 7 8.1693 1.7005 11.2474 24 14 10.9291 1.8444 11.0385 25 1 11.2863 3.2552 10.7433 26 1 11.0044 1.6107 12.5031 27 1 11.8777 0.9378 10.3432 28 1 -0.3634 0.0773 1.0247 29 1 -0.3633 0.8488 -0.5793 30 1 -0.3633 -0.9260 -0.4455 31 1 3.1715 -0.8753 -1.2681 32 1 1.6111 -1.8584 -1.2684 33 1 3.9591 -3.5510 3.1640 34 1 2.5708 -3.0589 2.1647 35 1 3.7400 -4.9030 1.0579 36 1 3.9818 -3.4121 0.1162 37 1 6.0361 -4.5731 0.4885 38 1 6.0892 -2.2829 2.8567 39 1 5.9577 -0.6037 2.2808 40 1 4.5165 -0.0510 4.2214 41 1 4.6479 -1.7301 4.7972 42 1 7.2553 -0.6993 4.4586 43 1 8.3287 -0.7108 6.9307 44 1 8.1977 0.9682 6.3542 45 1 8.3178 2.0224 12.1503 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001056852124.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:38 Heat of formation + Delta-G solvation = -99.270144 kcal Electronic energy + Delta-G solvation = -25411.664968 eV Core-core repulsion = 21556.399377 eV Total energy + Delta-G solvation = -3855.265591 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.66997 -39.06270 -37.87608 -37.13924 -35.78860 -34.35656 -32.39220 -30.98592 -29.43456 -29.23481 -27.78326 -25.47433 -24.70230 -23.54984 -22.43411 -21.08851 -20.36755 -19.13348 -18.27311 -17.79619 -17.49868 -16.84744 -16.26043 -15.87467 -15.39357 -15.36714 -15.15875 -14.77057 -14.52245 -14.30063 -13.96912 -13.84320 -13.77650 -13.52573 -13.11112 -13.05273 -12.88540 -12.52014 -12.49673 -12.20761 -12.09109 -11.87593 -11.77389 -11.27277 -11.03137 -10.98743 -10.83418 -10.73447 -10.52072 -10.46968 -10.06725 -9.78371 -9.39338 -9.03487 -9.02664 -8.82726 -8.19087 -6.45744 -6.18037 -3.88225 2.15979 2.46094 3.14064 3.16699 3.25228 3.31140 3.35385 3.40113 3.70866 3.84403 3.99617 4.23980 4.30743 4.32754 4.48612 4.61137 4.68596 4.80757 4.86842 4.90452 4.96333 5.03017 5.16947 5.18946 5.22310 5.24928 5.31814 5.36218 5.40382 5.47729 5.66037 5.68428 5.78454 5.89149 5.92524 5.95691 6.18583 6.20434 6.66947 7.00256 7.15400 7.63248 7.75995 7.88222 8.38992 8.67556 9.27158 10.89420 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.021203 B = 0.002007 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.277015 B =13948.877832 C =14698.353432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 H 0.118 0.882 4 C -0.149 4.149 5 C -0.194 4.194 6 H 0.125 0.875 7 C 0.542 3.458 8 O -0.531 6.531 9 N -0.598 5.598 10 C 0.107 3.893 11 C 0.058 3.942 12 O -0.568 6.568 13 C 0.110 3.890 14 C 0.108 3.892 15 N -0.735 5.735 16 C 0.533 3.467 17 O -0.518 6.518 18 C -0.152 4.152 19 S -0.061 6.061 20 C -0.534 4.534 21 H 0.073 0.927 22 C 0.072 3.928 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.380 0.620 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.399 0.601 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.961 -13.665 -28.365 33.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.139 4.139 3 H 0.136 0.864 4 C -0.186 4.186 5 C -0.215 4.215 6 H 0.142 0.858 7 C 0.330 3.670 8 O -0.407 6.407 9 N -0.330 5.330 10 C -0.016 4.016 11 C -0.021 4.021 12 O -0.373 6.373 13 C -0.013 4.013 14 C -0.017 4.017 15 N -0.391 5.391 16 C 0.319 3.681 17 O -0.392 6.392 18 C -0.303 4.303 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.137 4.137 23 N -0.503 5.503 24 Si 0.746 3.254 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.116 0.884 32 H 0.122 0.878 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.227 0.773 38 H 0.112 0.888 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.232 0.768 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.675 -12.450 -26.684 32.466 hybrid contribution 2.791 -0.519 -0.941 2.991 sum -10.884 -12.968 -27.625 32.400 Atomic orbital electron populations 1.21408 0.92063 1.02230 1.02436 1.22405 0.95360 0.95159 1.00984 0.86396 1.23100 1.03164 1.01804 0.90566 1.22368 0.97802 1.05607 0.95715 0.85762 1.19737 0.84696 0.84410 0.78144 1.90730 1.68148 1.20675 1.61162 1.47602 1.24038 1.09762 1.51645 1.21766 0.98824 0.81535 0.99515 1.22682 0.82228 0.98738 0.98438 1.86505 1.20294 1.77587 1.52943 1.21602 0.85581 1.02461 0.91703 1.21565 0.87348 1.00935 0.91891 1.45824 1.09093 1.70102 1.14050 1.20304 0.91265 0.75872 0.80685 1.90700 1.32680 1.51032 1.64788 1.23524 0.97258 1.04608 1.04916 1.85399 1.11854 1.85016 1.01156 1.22873 0.92543 1.51642 1.01215 0.90909 1.25000 0.98215 0.94849 0.95608 1.70026 1.30160 1.42860 1.07281 0.86159 0.82641 0.78733 0.77905 1.20281 1.20779 1.19704 0.91749 0.91557 0.92376 0.88356 0.87775 0.89051 0.88535 0.92555 0.93207 0.77330 0.88766 0.89479 0.91468 0.91768 0.76778 0.89158 0.89148 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 10.19 37.16 0.38 -0.29 16 2 C -0.12 -0.89 5.92 -90.62 -0.54 -1.42 16 3 H 0.12 1.12 7.67 -51.93 -0.40 0.72 16 4 C -0.15 -0.86 9.88 -26.73 -0.26 -1.12 16 5 C -0.19 -1.41 5.01 -91.77 -0.46 -1.87 16 6 H 0.12 0.63 6.44 -51.93 -0.33 0.30 16 7 C 0.54 5.92 7.46 -10.99 -0.08 5.83 16 8 O -0.53 -8.05 15.84 5.56 0.09 -7.96 16 9 N -0.60 -5.58 2.44 -173.69 -0.42 -6.00 16 10 C 0.11 0.64 5.64 -4.04 -0.02 0.62 16 11 C 0.06 0.27 7.39 37.16 0.27 0.54 16 12 O -0.57 -3.47 12.48 -35.23 -0.44 -3.91 16 13 C 0.11 1.16 5.34 -4.04 -0.02 1.14 16 14 C 0.11 1.47 6.00 -4.04 -0.02 1.44 16 15 N -0.74 -10.83 5.56 -60.29 -0.33 -11.17 16 16 C 0.53 10.61 7.85 -10.98 -0.09 10.53 16 17 O -0.52 -12.49 15.86 5.55 0.09 -12.40 16 18 C -0.15 -3.21 6.16 36.00 0.22 -2.98 16 19 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 20 C -0.53 -15.55 9.50 30.94 0.29 -15.25 16 21 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.63 13.22 55.49 0.73 -25.89 16 24 Si 0.92 21.78 29.55 -169.99 -5.02 16.76 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.23 7.90 -51.93 -0.41 -0.18 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.10 0.37 8.05 -51.93 -0.42 -0.05 16 33 H 0.09 0.58 8.07 -51.93 -0.42 0.16 16 34 H 0.10 0.38 6.00 -51.93 -0.31 0.07 16 35 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 36 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.38 0.83 9.12 45.56 0.42 1.25 16 38 H 0.09 0.90 7.11 -51.93 -0.37 0.53 16 39 H 0.09 1.03 7.42 -51.93 -0.39 0.64 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.40 4.59 8.47 -40.82 -0.35 4.24 16 43 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 44 H 0.09 1.77 8.14 -51.91 -0.42 1.34 16 45 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 394.30 15.07 5.94 5.94 Total: -1.00 -39.15 394.30 -8.33 -47.48 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -6.33 Total: 1.89 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -0.42 Total: -0.82 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: -0.02 Total: -43.06 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.26 Total: -24.27 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -39.15 -8.33 -47.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001056852124.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.793 kcal (2) G-P(sol) polarization free energy of solvation -39.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds