Wall clock time and date at job start Tue Mar 31 2020 06:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 115.55476 * 2 1 4 4 C 1.52997 * 117.49810 * 214.28956 * 2 1 3 5 5 C 1.52995 * 60.00243 * 252.51219 * 4 2 1 6 6 H 1.09000 * 117.51803 * 252.51968 * 5 4 2 7 7 C 1.50706 * 117.49952 * 107.48601 * 5 4 2 8 8 O 1.21270 * 120.00190 * 291.37907 * 7 5 4 9 9 N 1.34774 * 119.99638 * 111.38243 * 7 5 4 10 10 C 1.46505 * 120.00261 * 359.97438 * 9 7 5 11 11 C 1.52997 * 109.47212 * 270.00136 * 10 9 7 12 12 O 1.42904 * 109.47396 * 64.99584 * 11 10 9 13 13 C 1.46496 * 120.00119 * 180.02562 * 9 7 5 14 14 C 1.53007 * 109.47224 * 269.99893 * 13 9 7 15 15 N 1.46497 * 109.47192 * 179.97438 * 14 13 9 16 16 C 1.34776 * 119.99815 * 179.97438 * 15 14 13 17 17 O 1.21280 * 120.00064 * 0.02562 * 16 15 14 18 18 C 1.50706 * 119.99982 * 180.02562 * 16 15 14 19 19 S 1.80998 * 109.47097 * 180.02562 * 18 16 15 20 20 C 1.76206 * 99.99830 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99887 * 359.97438 * 20 19 18 22 22 C 1.38793 * 119.99969 * 179.97438 * 20 19 18 23 23 N 1.31629 * 120.00231 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 120.00022 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47476 * 89.99625 * 24 22 20 26 26 H 1.48500 * 109.47199 * 210.00138 * 24 22 20 27 27 H 1.48504 * 109.47108 * 329.99652 * 24 22 20 28 28 H 1.09000 * 109.47104 * 274.33387 * 1 2 3 29 29 H 1.08998 * 109.47250 * 34.33089 * 1 2 3 30 30 H 1.09004 * 109.47653 * 154.33062 * 1 2 3 31 31 H 1.08997 * 117.50118 * 145.02149 * 4 2 1 32 32 H 1.09001 * 117.49802 * 0.02562 * 4 2 1 33 33 H 1.09002 * 109.47068 * 30.00196 * 10 9 7 34 34 H 1.09001 * 109.47372 * 150.00283 * 10 9 7 35 35 H 1.09001 * 109.47630 * 184.99905 * 11 10 9 36 36 H 1.09004 * 109.47346 * 305.00035 * 11 10 9 37 37 H 0.96691 * 114.00252 * 179.97438 * 12 11 10 38 38 H 1.09006 * 109.47349 * 29.99742 * 13 9 7 39 39 H 1.09003 * 109.47665 * 149.99907 * 13 9 7 40 40 H 1.09002 * 109.46832 * 299.99655 * 14 13 9 41 41 H 1.08997 * 109.46824 * 59.99917 * 14 13 9 42 42 H 0.97000 * 120.00314 * 0.02562 * 15 14 13 43 43 H 1.08998 * 109.47138 * 300.00943 * 18 16 15 44 44 H 1.09007 * 109.46746 * 60.00198 * 18 16 15 45 45 H 0.96995 * 120.00393 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9833 0.0000 4 6 2.2364 -1.1213 -0.7646 5 6 2.2364 -1.1208 0.7654 6 1 3.1713 -0.8747 1.2689 7 6 1.3718 -2.1401 1.4616 8 8 0.1638 -2.0527 1.4020 9 7 1.9414 -3.1488 2.1505 10 6 3.4008 -3.2547 2.2221 11 6 3.9083 -4.1053 1.0560 12 8 3.6379 -3.4341 -0.1763 13 6 1.1011 -4.1401 2.8268 14 6 0.8079 -3.6718 4.2537 15 7 -0.0329 -4.6628 4.9298 16 6 -0.4195 -4.4608 6.2050 17 8 -0.0717 -3.4585 6.7926 18 6 -1.2840 -5.4805 6.9008 19 16 -1.6308 -4.9265 8.5887 20 6 -2.6270 -6.2664 9.1518 21 1 -2.8439 -7.0929 8.4913 22 6 -3.1330 -6.2596 10.4442 23 7 -3.8776 -7.2602 10.8648 24 14 -2.7585 -4.8296 11.5864 25 1 -3.8066 -3.7885 11.4363 26 1 -2.7362 -5.3108 12.9911 27 1 -1.4346 -4.2529 11.2398 28 1 -0.3633 0.0777 1.0247 29 1 -0.3634 0.8486 -0.5796 30 1 -0.3634 -0.9262 -0.4452 31 1 3.1714 -0.8757 -1.2679 32 1 1.6111 -1.8587 -1.2679 33 1 3.8406 -2.2590 2.1640 34 1 3.6854 -3.7231 3.1643 35 1 4.9827 -4.2582 1.1583 36 1 3.4017 -5.0704 1.0628 37 1 3.9337 -3.9168 -0.9602 38 1 0.1638 -4.2542 2.2821 39 1 1.6218 -5.0971 2.8583 40 1 1.7452 -3.5578 4.7984 41 1 0.2872 -2.7148 4.2222 42 1 -0.3107 -5.4646 4.4600 43 1 -2.2213 -5.5945 6.3562 44 1 -0.7633 -6.4377 6.9319 45 1 -4.2309 -7.2557 11.7681 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001056852125.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:42 Heat of formation + Delta-G solvation = -91.971499 kcal Electronic energy + Delta-G solvation = -25765.554456 eV Core-core repulsion = 21910.605358 eV Total energy + Delta-G solvation = -3854.949098 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.67414 -39.23430 -37.80823 -37.00705 -35.71427 -34.44848 -32.42958 -30.99101 -29.57968 -28.95569 -27.79126 -25.61804 -24.71205 -23.57691 -22.34474 -21.11903 -20.52027 -18.91038 -18.15886 -17.83133 -17.61651 -16.68727 -16.34256 -15.81218 -15.59666 -15.38234 -15.26728 -14.93348 -14.52682 -14.27291 -13.97077 -13.82080 -13.55248 -13.29836 -13.08595 -13.00132 -12.78884 -12.66851 -12.45593 -12.28570 -12.16150 -11.88021 -11.64759 -11.46079 -11.25680 -10.99680 -10.60980 -10.53643 -10.37919 -10.22823 -9.85961 -9.72123 -9.53340 -9.05228 -9.02087 -8.96529 -8.48935 -6.90741 -6.27957 -3.99626 2.30819 2.43953 2.85009 2.98629 3.33949 3.39495 3.51688 3.58738 3.71452 3.79559 4.14509 4.34268 4.40730 4.49577 4.60512 4.67344 4.71415 4.73256 4.81005 4.88517 4.89738 5.00186 5.11089 5.16089 5.18052 5.28306 5.34198 5.49176 5.60265 5.66053 5.73049 5.78479 5.79879 5.84550 5.95479 6.02107 6.13937 6.35122 6.51273 7.04032 7.11764 7.58985 7.95133 7.98683 8.42561 8.49278 9.18269 10.81245 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.023813 B = 0.002090 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.558466 B =13396.202769 C =13960.062934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.134 4.134 3 H 0.107 0.893 4 C -0.118 4.118 5 C -0.177 4.177 6 H 0.117 0.883 7 C 0.555 3.445 8 O -0.530 6.530 9 N -0.606 5.606 10 C 0.108 3.892 11 C 0.057 3.943 12 O -0.560 6.560 13 C 0.106 3.894 14 C 0.108 3.892 15 N -0.735 5.735 16 C 0.532 3.468 17 O -0.519 6.519 18 C -0.123 4.123 19 S -0.142 6.142 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.055 0.945 36 H 0.048 0.952 37 H 0.376 0.624 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.400 0.600 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.153 7.538 -26.976 33.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.153 4.153 3 H 0.125 0.875 4 C -0.155 4.155 5 C -0.197 4.197 6 H 0.135 0.865 7 C 0.344 3.656 8 O -0.406 6.406 9 N -0.339 5.339 10 C -0.016 4.016 11 C -0.022 4.022 12 O -0.365 6.365 13 C -0.017 4.017 14 C -0.017 4.017 15 N -0.390 5.390 16 C 0.317 3.683 17 O -0.393 6.393 18 C -0.274 4.274 19 S 0.084 5.916 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.222 0.778 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.233 0.767 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 18.720 9.629 -25.460 33.036 hybrid contribution -0.028 -1.771 -0.448 1.827 sum 18.692 7.858 -25.908 32.899 Atomic orbital electron populations 1.21346 0.91641 1.01231 1.02556 1.22473 0.96552 0.93698 1.02583 0.87507 1.22761 1.02028 1.00193 0.90553 1.22065 1.01166 1.00093 0.96424 0.86548 1.19739 0.87840 0.80740 0.77281 1.90724 1.14661 1.74183 1.61078 1.47677 1.06308 1.27844 1.52087 1.21747 0.80080 1.02143 0.97583 1.22625 0.98824 0.95339 0.85405 1.86615 1.85027 1.49371 1.15489 1.21553 0.96803 0.91142 0.92239 1.21583 0.95313 0.93122 0.91704 1.45797 1.54418 1.24819 1.13950 1.20281 0.79912 0.87234 0.80834 1.90703 1.54940 1.28787 1.64846 1.23274 1.01708 1.00677 1.01735 1.84803 1.67596 1.32996 1.06189 1.22317 1.35474 1.06703 1.02352 0.89368 1.24716 0.93489 0.96042 0.97108 1.69936 1.32626 1.30684 1.18464 0.86729 0.81761 0.82775 0.80554 1.19195 1.19955 1.15931 0.91480 0.93447 0.91920 0.88395 0.88726 0.89201 0.88667 0.92641 0.93414 0.77755 0.89071 0.90049 0.91659 0.91177 0.76656 0.88413 0.88415 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 8.43 37.16 0.31 -0.81 16 2 C -0.13 -1.13 6.41 -90.62 -0.58 -1.71 16 3 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.12 -0.84 8.03 -26.74 -0.21 -1.06 16 5 C -0.18 -1.49 4.30 -91.77 -0.39 -1.88 16 6 H 0.12 0.81 6.44 -51.93 -0.33 0.48 16 7 C 0.55 6.03 7.14 -10.98 -0.08 5.95 16 8 O -0.53 -7.60 12.68 5.57 0.07 -7.53 16 9 N -0.61 -5.17 2.46 -173.68 -0.43 -5.59 16 10 C 0.11 0.58 5.78 -4.04 -0.02 0.55 16 11 C 0.06 0.22 7.39 37.16 0.27 0.49 16 12 O -0.56 -2.49 10.22 -35.23 -0.36 -2.85 16 13 C 0.11 0.93 5.52 -4.04 -0.02 0.91 16 14 C 0.11 1.29 6.00 -4.04 -0.02 1.26 16 15 N -0.73 -9.54 5.56 -60.29 -0.33 -9.88 16 16 C 0.53 9.67 7.85 -10.98 -0.09 9.59 16 17 O -0.52 -11.56 15.86 5.56 0.09 -11.47 16 18 C -0.12 -2.41 6.16 36.01 0.22 -2.19 16 19 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16 20 C -0.52 -15.13 10.04 30.94 0.31 -14.82 16 21 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 22 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 23 N -0.88 -26.73 13.97 55.49 0.78 -25.96 16 24 Si 0.86 22.01 27.74 -169.99 -4.72 17.29 16 25 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 28 H 0.07 0.82 7.26 -51.93 -0.38 0.44 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.72 7.02 -51.93 -0.36 0.35 16 31 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.77 8.05 -51.93 -0.42 0.36 16 33 H 0.09 0.45 5.99 -51.93 -0.31 0.14 16 34 H 0.10 0.40 8.07 -51.93 -0.42 -0.02 16 35 H 0.06 0.13 8.14 -51.93 -0.42 -0.30 16 36 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.38 0.38 9.12 45.56 0.42 0.80 16 38 H 0.09 0.92 7.42 -51.93 -0.39 0.54 16 39 H 0.08 0.50 8.07 -51.93 -0.42 0.09 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.40 3.89 8.47 -40.82 -0.35 3.54 16 43 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 44 H 0.10 1.74 8.14 -51.91 -0.42 1.32 16 45 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 382.05 15.07 5.76 5.76 Total: -1.00 -37.61 382.05 -7.88 -45.49 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.34 Total: 1.38 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -0.40 Total: -1.00 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.01 Total: -41.43 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.20 Total: -21.84 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.72 Total: 17.29 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.61 -7.88 -45.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001056852125.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.481 kcal (2) G-P(sol) polarization free energy of solvation -37.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds