Wall clock time and date at job start Tue Mar 31 2020 06:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 115.54951 * 2 1 4 4 C 1.53002 * 117.49888 * 145.67026 * 2 1 3 5 5 C 1.53000 * 117.50107 * 214.32788 * 2 1 3 6 6 H 1.09008 * 117.49673 * 359.97438 * 5 2 1 7 7 C 1.50692 * 117.50104 * 144.97269 * 5 2 1 8 8 O 1.21282 * 119.99963 * 0.02562 * 7 5 2 9 9 N 1.34778 * 120.00351 * 180.02562 * 7 5 2 10 10 C 1.46499 * 119.99768 * 359.97438 * 9 7 5 11 11 C 1.53003 * 109.46909 * 90.00285 * 10 9 7 12 12 O 1.42900 * 109.47025 * 64.99746 * 11 10 9 13 13 C 1.46494 * 120.00083 * 180.02562 * 9 7 5 14 14 C 1.53001 * 109.47462 * 90.00069 * 13 9 7 15 15 N 1.46499 * 109.47137 * 179.97438 * 14 13 9 16 16 C 1.34774 * 120.00073 * 179.97438 * 15 14 13 17 17 O 1.21289 * 119.99986 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.00410 * 180.02562 * 16 15 14 19 19 S 1.80999 * 109.47609 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00218 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99812 * 359.97438 * 20 19 18 22 22 C 1.38797 * 119.99903 * 180.02562 * 20 19 18 23 23 N 1.31627 * 120.00008 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99794 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47519 * 59.99578 * 24 22 20 26 26 H 1.48508 * 109.46989 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46725 * 299.99331 * 24 22 20 28 28 H 1.08997 * 109.47260 * 205.57907 * 1 2 3 29 29 H 1.09000 * 109.47658 * 325.58288 * 1 2 3 30 30 H 1.09001 * 109.47132 * 85.58115 * 1 2 3 31 31 H 1.09000 * 117.49996 * 215.00804 * 4 2 1 32 32 H 1.08999 * 117.49664 * 0.02562 * 4 2 1 33 33 H 1.08998 * 109.47583 * 209.99936 * 10 9 7 34 34 H 1.08993 * 109.47416 * 330.00712 * 10 9 7 35 35 H 1.08996 * 109.47833 * 184.99982 * 11 10 9 36 36 H 1.09002 * 109.47223 * 305.00173 * 11 10 9 37 37 H 0.96701 * 113.99995 * 180.02562 * 12 11 10 38 38 H 1.09003 * 109.47161 * 209.99587 * 13 9 7 39 39 H 1.08995 * 109.47528 * 329.99177 * 13 9 7 40 40 H 1.08999 * 109.47023 * 299.99818 * 14 13 9 41 41 H 1.08996 * 109.47516 * 59.99860 * 14 13 9 42 42 H 0.97004 * 120.00153 * 359.97438 * 15 14 13 43 43 H 1.08999 * 109.46867 * 300.00109 * 18 16 15 44 44 H 1.08996 * 109.46842 * 59.99643 * 18 16 15 45 45 H 0.97003 * 119.99632 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1207 0.7654 5 6 2.2365 -1.1207 -0.7653 6 1 1.6112 -1.8584 -1.2685 7 6 3.5286 -0.7804 -1.4619 8 8 3.9710 0.3473 -1.4023 9 7 4.1929 -1.7292 -2.1512 10 6 3.6589 -3.0915 -2.2228 11 6 2.7382 -3.2152 -3.4385 12 8 3.5024 -3.0453 -4.6340 13 6 5.4494 -1.3984 -2.8279 14 6 6.6208 -1.6347 -1.8725 15 7 7.8773 -1.3045 -2.5495 16 6 9.0492 -1.4363 -1.8971 17 8 9.0636 -1.8287 -0.7495 18 6 10.3418 -1.0961 -2.5932 19 16 11.7277 -1.3757 -1.4631 20 6 13.0708 -0.9134 -2.5056 21 1 12.8809 -0.5821 -3.5159 22 6 14.3728 -0.9761 -2.0289 23 7 14.6041 -1.3803 -0.7978 24 14 15.7966 -0.4852 -3.1339 25 1 15.6348 0.9309 -3.5504 26 1 17.0744 -0.6399 -2.3930 27 1 15.8127 -1.3562 -4.3366 28 1 -0.3633 -0.9269 0.4437 29 1 -0.3634 0.8477 0.5808 30 1 -0.3633 0.0792 -1.0246 31 1 3.1713 -0.8747 1.2690 32 1 1.6112 -1.8583 1.2685 33 1 4.4819 -3.7999 -2.3169 34 1 3.0945 -3.3086 -1.3160 35 1 2.2717 -4.2003 -3.4424 36 1 1.9658 -2.4476 -3.3889 37 1 2.9817 -3.1110 -5.4462 38 1 5.5653 -2.0307 -3.7082 39 1 5.4338 -0.3518 -3.1319 40 1 6.5049 -1.0025 -0.9922 41 1 6.6365 -2.6813 -1.5686 42 1 7.8659 -0.9910 -3.4675 43 1 10.4578 -1.7286 -3.4733 44 1 10.3260 -0.0496 -2.8975 45 1 15.5141 -1.4237 -0.4645 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001056852126.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:47 Heat of formation + Delta-G solvation = -100.441663 kcal Electronic energy + Delta-G solvation = -25416.698996 eV Core-core repulsion = 21561.382604 eV Total energy + Delta-G solvation = -3855.316392 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.66186 -39.06368 -37.88820 -37.12575 -35.79120 -34.35883 -32.39285 -30.99577 -29.45005 -29.24690 -27.76778 -25.47094 -24.72057 -23.49806 -22.41229 -21.07071 -20.36858 -19.22131 -18.26933 -17.79616 -17.38363 -16.88139 -16.26933 -15.87075 -15.49378 -15.32573 -14.94426 -14.77061 -14.65363 -14.40006 -14.00430 -13.81037 -13.72838 -13.53482 -13.13862 -13.02869 -12.87690 -12.51466 -12.40212 -12.25861 -12.10719 -11.86327 -11.81029 -11.26813 -11.00868 -11.00666 -10.78036 -10.74223 -10.57929 -10.47017 -10.06217 -9.79262 -9.39615 -9.02817 -9.02755 -8.83067 -8.19601 -6.45836 -6.17849 -3.88189 2.16469 2.45191 3.14409 3.16428 3.26418 3.30575 3.37172 3.39976 3.70869 3.83792 4.00861 4.24144 4.32933 4.34600 4.52332 4.55361 4.70783 4.79759 4.88246 4.90137 4.91624 5.02864 5.17030 5.18982 5.21980 5.29021 5.31399 5.33277 5.40329 5.53242 5.62551 5.68336 5.78399 5.88856 5.93150 5.95521 6.18582 6.20515 6.66651 7.00204 7.14322 7.62943 7.75716 7.88362 8.38812 8.67223 9.27173 10.89541 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.021363 B = 0.002015 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.352341 B =13893.159515 C =14617.923653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 H 0.118 0.882 4 C -0.147 4.147 5 C -0.195 4.195 6 H 0.122 0.878 7 C 0.542 3.458 8 O -0.531 6.531 9 N -0.599 5.599 10 C 0.107 3.893 11 C 0.057 3.943 12 O -0.567 6.567 13 C 0.110 3.890 14 C 0.109 3.891 15 N -0.736 5.736 16 C 0.533 3.467 17 O -0.518 6.518 18 C -0.152 4.152 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.057 0.943 36 H 0.047 0.953 37 H 0.380 0.620 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.399 0.601 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.715 -3.728 -5.362 33.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.141 4.141 3 H 0.136 0.864 4 C -0.185 4.185 5 C -0.216 4.216 6 H 0.140 0.860 7 C 0.330 3.670 8 O -0.407 6.407 9 N -0.331 5.331 10 C -0.016 4.016 11 C -0.022 4.022 12 O -0.372 6.372 13 C -0.014 4.014 14 C -0.017 4.017 15 N -0.391 5.391 16 C 0.319 3.681 17 O -0.392 6.392 18 C -0.303 4.303 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.200 1.200 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.227 0.773 38 H 0.112 0.888 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.232 0.768 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -31.831 -3.752 -2.822 32.175 hybrid contribution 0.389 0.621 -2.969 3.059 sum -31.441 -3.131 -5.791 32.123 Atomic orbital electron populations 1.21399 0.92165 1.02329 1.02129 1.22402 0.95221 0.95212 1.01252 0.86405 1.23154 1.03404 1.01522 0.90380 1.22362 0.97734 1.05499 0.96033 0.86050 1.19762 0.84629 0.84447 0.78124 1.90730 1.68458 1.20853 1.60666 1.47591 1.23197 1.10107 1.52210 1.21751 0.98989 0.83839 0.97069 1.22717 0.93789 0.99834 0.85904 1.86510 1.39035 1.95844 1.15856 1.21596 0.81665 1.03225 0.94872 1.21559 0.82817 1.01118 0.96205 1.45826 1.05537 1.70533 1.17173 1.20302 0.84419 0.76753 0.86641 1.90700 1.86897 1.44319 1.17302 1.23525 0.97392 1.04615 1.04789 1.85393 0.93625 1.87200 1.17167 1.22834 0.92644 1.51762 1.01125 0.90958 1.24994 0.98298 0.94814 0.95517 1.70013 1.21411 1.43932 1.14971 0.86220 0.80197 0.79097 0.79949 1.19943 1.20831 1.19954 0.92330 0.91544 0.92037 0.87964 0.87623 0.88965 0.88387 0.92451 0.93444 0.77296 0.88783 0.89462 0.91519 0.91760 0.76771 0.89161 0.89149 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 10.19 37.16 0.38 -0.23 16 2 C -0.12 -0.90 5.92 -90.62 -0.54 -1.44 16 3 H 0.12 1.12 7.67 -51.93 -0.40 0.72 16 4 C -0.15 -1.00 9.89 -26.69 -0.26 -1.26 16 5 C -0.20 -1.44 4.52 -91.74 -0.41 -1.85 16 6 H 0.12 0.58 6.56 -51.92 -0.34 0.24 16 7 C 0.54 5.94 7.46 -10.99 -0.08 5.86 16 8 O -0.53 -8.06 15.84 5.56 0.09 -7.98 16 9 N -0.60 -5.60 2.44 -173.70 -0.42 -6.02 16 10 C 0.11 0.65 5.45 -4.04 -0.02 0.63 16 11 C 0.06 0.26 7.24 37.16 0.27 0.53 16 12 O -0.57 -3.48 12.49 -35.23 -0.44 -3.92 16 13 C 0.11 1.16 5.34 -4.04 -0.02 1.14 16 14 C 0.11 1.47 6.00 -4.04 -0.02 1.44 16 15 N -0.74 -10.81 5.56 -60.29 -0.33 -11.14 16 16 C 0.53 10.59 7.85 -10.99 -0.09 10.51 16 17 O -0.52 -12.45 15.86 5.55 0.09 -12.37 16 18 C -0.15 -3.21 6.16 36.01 0.22 -2.98 16 19 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 20 C -0.54 -15.56 9.50 30.94 0.29 -15.27 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.60 13.22 55.49 0.73 -25.87 16 24 Si 0.92 21.76 29.55 -169.99 -5.02 16.73 16 25 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 28 H 0.06 0.22 7.90 -51.93 -0.41 -0.19 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.11 0.48 8.05 -51.93 -0.42 0.07 16 33 H 0.09 0.59 8.07 -51.93 -0.42 0.17 16 34 H 0.10 0.40 6.64 -51.93 -0.34 0.06 16 35 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 36 H 0.05 0.21 7.57 -51.93 -0.39 -0.19 16 37 H 0.38 0.84 9.12 45.56 0.42 1.25 16 38 H 0.09 0.90 7.12 -51.93 -0.37 0.53 16 39 H 0.09 1.03 7.42 -51.93 -0.39 0.65 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.40 4.58 8.47 -40.82 -0.35 4.24 16 43 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 44 H 0.09 1.77 8.14 -51.92 -0.42 1.34 16 45 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 393.68 15.07 5.93 5.93 Total: -1.00 -39.04 393.68 -8.31 -47.35 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -6.34 Total: 2.09 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -0.38 Total: -0.91 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: -0.02 Total: -43.04 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.26 Total: -24.26 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -39.04 -8.31 -47.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001056852126.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.091 kcal (2) G-P(sol) polarization free energy of solvation -39.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds