Wall clock time and date at job start Tue Mar 31 2020 05:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 115.54977 * 2 1 4 4 O 1.21277 * 120.00097 * 245.33668 * 3 2 1 5 5 N 1.34772 * 119.99809 * 65.34089 * 3 2 1 6 6 C 1.46503 * 120.00301 * 176.47648 * 5 3 2 7 7 C 1.52995 * 109.47171 * 271.48731 * 6 5 3 8 8 O 1.42898 * 109.47313 * 67.40479 * 7 6 5 9 9 C 1.46499 * 120.00177 * 356.47560 * 5 3 2 10 10 C 1.52995 * 109.47165 * 264.70641 * 9 5 3 11 11 N 1.46499 * 109.47175 * 175.18426 * 10 9 5 12 12 C 1.34784 * 120.00379 * 180.02562 * 11 10 9 13 13 O 1.21281 * 119.99514 * 359.97438 * 12 11 10 14 14 C 1.50692 * 120.00409 * 179.97438 * 12 11 10 15 15 S 1.80998 * 109.47308 * 179.97438 * 14 12 11 16 16 C 1.76203 * 100.00157 * 180.02562 * 15 14 12 17 17 H 1.07996 * 119.99792 * 0.02562 * 16 15 14 18 18 C 1.38799 * 119.99763 * 180.02562 * 16 15 14 19 19 N 1.31628 * 120.00385 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99729 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46998 * 59.99522 * 20 18 16 22 22 H 1.48493 * 109.47295 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47259 * 299.99852 * 20 18 16 24 24 C 1.52996 * 117.49937 * 145.67287 * 2 1 3 25 25 C 1.53001 * 117.49529 * 214.33620 * 2 1 3 26 26 H 1.09001 * 109.47252 * 51.12034 * 1 2 3 27 27 H 1.08996 * 109.47532 * 171.12243 * 1 2 3 28 28 H 1.09005 * 109.47241 * 291.12575 * 1 2 3 29 29 H 1.08995 * 109.47231 * 151.48263 * 6 5 3 30 30 H 1.09002 * 109.46970 * 31.48386 * 6 5 3 31 31 H 1.09000 * 109.46997 * 187.41018 * 7 6 5 32 32 H 1.09000 * 109.47136 * 307.40149 * 7 6 5 33 33 H 0.96705 * 113.99909 * 180.02562 * 8 7 6 34 34 H 1.08996 * 109.46988 * 24.70757 * 9 5 3 35 35 H 1.09000 * 109.47538 * 144.70340 * 9 5 3 36 36 H 1.08999 * 109.47417 * 295.18410 * 10 9 5 37 37 H 1.08998 * 109.47237 * 55.18707 * 10 9 5 38 38 H 0.97006 * 120.00380 * 359.97438 * 11 10 9 39 39 H 1.08999 * 109.47075 * 300.00150 * 14 12 11 40 40 H 1.09004 * 109.47087 * 59.99877 * 14 12 11 41 41 H 0.96997 * 120.00111 * 180.02562 * 19 18 16 42 42 H 1.08998 * 117.49981 * 215.00021 * 24 2 1 43 43 H 1.09005 * 117.49735 * 0.02710 * 24 2 1 44 44 H 1.08992 * 117.50162 * 359.96885 * 25 2 1 45 45 H 1.09003 * 117.49911 * 145.00007 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3596 0.0000 4 8 2.8369 1.7177 -0.9545 5 7 2.0312 2.1776 1.0607 6 6 2.7256 3.4672 1.0945 7 6 4.1127 3.2835 1.7134 8 8 4.9237 2.4956 0.8397 9 6 1.1751 1.7773 2.1801 10 6 -0.2208 2.3751 1.9938 11 7 -1.1081 1.8824 3.0503 12 6 -2.3961 2.2778 3.0877 13 8 -2.8203 3.0420 2.2469 14 6 -3.3089 1.7705 4.1740 15 16 -4.9603 2.4779 3.9537 16 6 -5.7944 1.7387 5.3185 17 1 -5.2615 1.0722 5.9803 18 6 -7.1364 2.0132 5.5429 19 7 -7.7858 2.8260 4.7366 20 14 -8.0204 1.2300 6.9902 21 1 -7.3550 1.6348 8.2546 22 1 -9.4350 1.6814 7.0093 23 1 -7.9739 -0.2482 6.8577 24 6 2.2364 -1.1207 0.7653 25 6 2.2363 -1.1207 -0.7655 26 1 -0.3634 0.6450 -0.8000 27 1 -0.3634 -1.0153 -0.1586 28 1 -0.3634 0.3704 0.9586 29 1 2.1511 4.1737 1.6935 30 1 2.8286 3.8510 0.0795 31 1 4.5773 4.2586 1.8597 32 1 4.0176 2.7785 2.6747 33 1 5.8190 2.3381 1.1695 34 1 1.1035 0.6901 2.2120 35 1 1.6043 2.1406 3.1139 36 1 -0.1607 3.4621 2.0475 37 1 -0.6154 2.0806 1.0214 38 1 -0.7689 1.2708 3.7226 39 1 -3.3687 0.6835 4.1202 40 1 -2.9147 2.0650 5.1467 41 1 -8.7235 3.0180 4.8937 42 1 3.1713 -0.8747 1.2688 43 1 1.6111 -1.8584 1.2684 44 1 1.6111 -1.8582 -1.2687 45 1 3.1713 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001057836758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:06 Heat of formation + Delta-G solvation = -90.844681 kcal Electronic energy + Delta-G solvation = -26170.798231 eV Core-core repulsion = 22315.897995 eV Total energy + Delta-G solvation = -3854.900236 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.75598 -39.18972 -37.70509 -36.68814 -36.26341 -34.24563 -32.45600 -30.99378 -29.69899 -28.79778 -27.82412 -25.51177 -24.38556 -23.43167 -22.75143 -21.67514 -20.57343 -18.80828 -17.88407 -17.82853 -17.06312 -16.89281 -16.35945 -16.16402 -15.58508 -15.32387 -14.94401 -14.82875 -14.78154 -14.28483 -14.04890 -13.79307 -13.60332 -13.23113 -13.07811 -12.73200 -12.61992 -12.54337 -12.49733 -12.25617 -12.08915 -11.83094 -11.74372 -11.50090 -11.07597 -11.06124 -10.80782 -10.79521 -10.43876 -10.27134 -9.86178 -9.79313 -9.52664 -9.09529 -9.01807 -8.98087 -8.27493 -6.53440 -6.24159 -3.95274 2.38659 2.48904 3.02603 3.04572 3.21308 3.25903 3.29260 3.40809 3.67908 3.89412 4.17767 4.20142 4.37486 4.48584 4.53577 4.58253 4.69193 4.79199 4.82931 4.97188 5.04545 5.10943 5.11741 5.15135 5.28659 5.38676 5.43294 5.48477 5.51253 5.57733 5.59709 5.62545 5.75983 5.82343 5.83964 6.00816 6.08668 6.19237 6.47673 7.08164 7.29741 7.56211 7.59346 8.01516 8.32164 8.53110 9.20982 10.83174 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.021546 B = 0.002254 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.209881 B =12419.596701 C =12959.025190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.160 4.160 3 C 0.559 3.441 4 O -0.516 6.516 5 N -0.604 5.604 6 C 0.112 3.888 7 C 0.060 3.940 8 O -0.557 6.557 9 C 0.097 3.903 10 C 0.095 3.905 11 N -0.738 5.738 12 C 0.533 3.467 13 O -0.514 6.514 14 C -0.153 4.153 15 S -0.060 6.060 16 C -0.537 4.537 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C -0.161 4.161 25 C -0.143 4.143 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.054 0.946 32 H 0.045 0.955 33 H 0.373 0.627 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.398 0.602 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.269 0.731 42 H 0.096 0.904 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.466 -5.709 -3.631 26.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.164 4.164 3 C 0.346 3.654 4 O -0.389 6.389 5 N -0.338 5.338 6 C -0.011 4.011 7 C -0.020 4.020 8 O -0.361 6.361 9 C -0.027 4.027 10 C -0.030 4.030 11 N -0.394 5.394 12 C 0.319 3.681 13 O -0.387 6.387 14 C -0.304 4.304 15 S 0.167 5.833 16 C -0.685 4.685 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.198 4.198 25 C -0.181 4.181 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.219 0.781 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.232 0.768 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.115 0.885 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 24.391 -4.104 -5.998 25.451 hybrid contribution 0.527 -1.559 2.778 3.229 sum 24.918 -5.664 -3.219 25.756 Atomic orbital electron populations 1.21658 0.89751 1.03235 1.03536 1.21428 0.96298 0.89339 1.09294 1.19488 0.79413 0.84864 0.81644 1.90703 1.39539 1.75083 1.33605 1.47609 1.47350 1.19247 1.19550 1.21570 0.90673 0.84949 1.03886 1.22606 0.92026 0.94663 0.92660 1.86704 1.27410 1.74145 1.47874 1.21802 0.89621 1.01506 0.89796 1.21860 0.88895 0.99748 0.92542 1.45873 1.10660 1.51194 1.31665 1.20325 0.81341 0.80442 0.86020 1.90721 1.74672 1.33969 1.39378 1.23526 1.02855 1.04649 0.99350 1.85432 0.96656 1.61626 1.39608 1.22818 0.98060 1.33333 1.14273 0.90961 1.24993 0.96403 0.95045 0.97126 1.70002 1.10415 1.33370 1.36468 0.86224 0.78357 0.79440 0.81479 1.19945 1.20810 1.19927 1.23105 1.02036 0.99345 0.95329 1.23037 1.02501 0.98440 0.94092 0.91553 0.91290 0.90424 0.88712 0.88858 0.92758 0.93647 0.78150 0.88798 0.89878 0.91339 0.90481 0.76771 0.89140 0.89169 0.92092 0.88510 0.87748 0.87892 0.87927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 8.35 37.16 0.31 -0.85 16 2 C -0.16 -1.52 1.37 -155.66 -0.21 -1.74 16 3 C 0.56 6.57 6.58 -10.99 -0.07 6.50 16 4 O -0.52 -8.02 15.54 -0.74 -0.01 -8.03 16 5 N -0.60 -5.60 2.47 -173.70 -0.43 -6.03 16 6 C 0.11 0.94 5.88 -4.04 -0.02 0.92 16 7 C 0.06 0.41 7.38 37.16 0.27 0.68 16 8 O -0.56 -5.06 12.51 -41.53 -0.52 -5.58 16 9 C 0.10 0.71 5.00 -4.04 -0.02 0.69 16 10 C 0.09 0.98 4.93 -4.04 -0.02 0.96 16 11 N -0.74 -8.40 5.56 -60.30 -0.34 -8.74 16 12 C 0.53 9.21 7.85 -10.99 -0.09 9.12 16 13 O -0.51 -11.20 15.86 5.56 0.09 -11.11 16 14 C -0.15 -2.90 6.16 36.00 0.22 -2.68 16 15 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 16 C -0.54 -14.94 9.50 30.94 0.29 -14.65 16 17 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 18 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 19 N -0.87 -25.84 13.22 55.49 0.73 -25.10 16 20 Si 0.92 21.02 29.55 -169.99 -5.02 16.00 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 C -0.16 -1.18 9.21 -26.69 -0.25 -1.43 16 25 C -0.14 -1.25 9.73 -26.69 -0.26 -1.51 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.56 8.06 -51.93 -0.42 0.14 16 28 H 0.08 0.71 4.19 -51.93 -0.22 0.50 16 29 H 0.09 0.59 8.06 -51.93 -0.42 0.18 16 30 H 0.09 0.99 7.42 -51.93 -0.39 0.60 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.37 1.72 9.12 45.56 0.42 2.13 16 34 H 0.09 0.61 5.23 -51.93 -0.27 0.34 16 35 H 0.08 0.45 8.11 -51.93 -0.42 0.03 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.93 5.92 -51.93 -0.31 0.63 16 38 H 0.40 3.18 8.47 -40.82 -0.35 2.84 16 39 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 40 H 0.09 1.56 8.14 -51.91 -0.42 1.14 16 41 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.10 1.01 7.99 -51.93 -0.42 0.60 16 LS Contribution 386.01 15.07 5.82 5.82 Total: -1.00 -37.99 386.01 -7.96 -45.95 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -6.13 Total: 2.61 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 0.06 Total: -2.00 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: -0.03 Total: -39.87 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.44 Total: -24.72 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.99 -7.96 -45.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001057836758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.890 kcal (2) G-P(sol) polarization free energy of solvation -37.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds