Wall clock time and date at job start Tue Mar 31 2020 05:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47000 * 2 1 4 4 C 1.50700 * 109.47208 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99803 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99675 * 180.27843 * 4 3 2 7 7 C 1.47146 * 120.98235 * 359.43705 * 6 4 3 8 8 C 1.53718 * 108.15866 * 129.43571 * 7 6 4 9 9 O 1.42961 * 109.14477 * 52.53889 * 8 7 6 10 10 C 1.42967 * 114.16817 * 297.28761 * 9 8 7 11 11 H 1.08996 * 109.50834 * 302.65596 * 10 9 8 12 12 C 1.53004 * 109.51137 * 182.50824 * 10 9 8 13 13 N 1.46501 * 109.47306 * 65.25346 * 12 10 9 14 14 C 1.34773 * 119.99665 * 179.97438 * 13 12 10 15 15 O 1.21282 * 120.00482 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99762 * 180.02562 * 14 13 12 17 17 S 1.81001 * 109.47253 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00062 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00180 * 0.02562 * 18 17 16 20 20 C 1.38802 * 119.99876 * 179.97438 * 18 17 16 21 21 N 1.31627 * 119.99988 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47159 * 89.99966 * 22 20 18 24 24 H 1.48502 * 109.47233 * 209.99853 * 22 20 18 25 25 H 1.48501 * 109.47352 * 329.99885 * 22 20 18 26 26 C 1.47158 * 120.97744 * 179.72646 * 6 4 3 27 27 H 1.09004 * 109.46774 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47672 * 299.99669 * 1 2 3 29 29 H 1.09001 * 109.47109 * 60.00906 * 1 2 3 30 30 H 1.09000 * 109.47849 * 239.99917 * 2 1 3 31 31 H 1.08998 * 109.47443 * 119.99785 * 2 1 3 32 32 H 1.09009 * 109.46730 * 59.99606 * 3 2 1 33 33 H 1.08998 * 109.46846 * 300.00150 * 3 2 1 34 34 H 1.08995 * 109.68541 * 249.20842 * 7 6 4 35 35 H 1.09002 * 109.68447 * 9.77483 * 7 6 4 36 36 H 1.09003 * 109.65820 * 292.57533 * 8 7 6 37 37 H 1.09004 * 109.48612 * 172.39490 * 8 7 6 38 38 H 1.08996 * 109.46640 * 185.25671 * 12 10 9 39 39 H 1.08999 * 109.46724 * 305.25316 * 12 10 9 40 40 H 0.96993 * 119.99655 * 0.02562 * 13 12 10 41 41 H 1.09006 * 109.47430 * 300.00024 * 16 14 13 42 42 H 1.08996 * 109.47475 * 59.99973 * 16 14 13 43 43 H 0.97004 * 120.00180 * 179.97438 * 21 20 18 44 44 H 1.09001 * 109.68316 * 350.23170 * 26 6 4 45 45 H 1.09000 * 109.67882 * 110.75240 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1534 0.3923 0.0015 6 7 4.2207 2.6099 0.0064 7 6 3.5069 3.8966 -0.0002 8 6 4.0757 4.7658 1.1328 9 8 5.4983 4.8289 1.0064 10 6 6.1544 3.5657 1.1401 11 1 5.9012 3.1243 2.1039 12 6 7.6688 3.7644 1.0499 13 7 8.1266 4.5556 2.1948 14 6 9.4336 4.8569 2.3261 15 8 10.2308 4.4735 1.4964 16 6 9.9046 5.6703 3.5041 17 16 11.6961 5.9054 3.3973 18 6 11.9669 6.8595 4.8537 19 1 11.1353 7.1174 5.4926 20 6 13.2491 7.2786 5.1804 21 7 14.2629 6.9629 4.4025 22 14 13.5363 8.2894 6.7248 23 1 13.8100 7.3810 7.8672 24 1 14.6993 9.1894 6.5183 25 1 12.3277 9.1015 7.0167 26 6 5.6921 2.6351 0.0132 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.6559 4.3941 -0.9584 35 1 2.4428 3.7270 0.1646 36 1 3.8149 4.3286 2.0967 37 1 3.6592 5.7708 1.0642 38 1 8.1637 2.7933 1.0581 39 1 7.9120 4.2884 0.1256 40 1 7.4891 4.8619 2.8585 41 1 9.4100 6.6416 3.4961 42 1 9.6611 5.1462 4.4282 43 1 15.1590 7.2561 4.6305 44 1 6.0757 1.6297 0.1867 45 1 6.0572 3.0072 -0.9441 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001064764114.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:31 Heat of formation + Delta-G solvation = -125.428418 kcal Electronic energy + Delta-G solvation = -25334.972978 eV Core-core repulsion = 21478.573079 eV Total energy + Delta-G solvation = -3856.399899 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.90620 -39.35141 -38.64589 -35.39932 -34.97495 -34.64539 -32.41418 -32.20292 -29.63458 -29.24148 -27.95280 -25.75363 -25.35429 -23.81595 -22.45898 -21.57917 -20.34703 -19.53872 -17.94378 -17.65923 -17.23124 -16.59883 -16.54958 -16.24262 -15.96149 -15.37814 -15.06403 -14.92966 -14.85113 -14.78826 -14.29003 -13.83436 -13.71671 -13.58895 -13.18080 -13.06264 -12.85519 -12.57551 -12.53368 -12.27317 -12.22694 -11.78383 -11.71751 -11.60933 -11.23910 -11.17472 -11.04980 -11.00822 -10.74931 -10.61633 -10.21603 -9.80058 -9.43105 -9.05877 -9.04938 -8.88395 -8.21415 -6.47870 -6.19963 -3.90308 2.14907 2.32200 3.04684 3.10744 3.19688 3.23552 3.29066 3.33224 3.70750 3.93942 4.20053 4.22078 4.31049 4.42426 4.44544 4.46417 4.59107 4.68312 4.70007 4.85711 4.96811 5.07032 5.09621 5.09965 5.15164 5.19944 5.21624 5.25503 5.39099 5.49473 5.57184 5.61723 5.65541 5.79271 5.81851 5.87962 5.92166 6.16831 6.56963 6.66871 6.82083 7.61231 7.67360 7.72040 8.36921 8.62773 9.25301 10.87476 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.032496 B = 0.001785 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.429969 B =15680.254619 C =15926.112501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.139 4.139 4 C 0.515 3.485 5 O -0.535 6.535 6 N -0.619 5.619 7 C 0.071 3.929 8 C 0.047 3.953 9 O -0.368 6.368 10 C 0.069 3.931 11 H 0.071 0.929 12 C 0.132 3.868 13 N -0.733 5.733 14 C 0.533 3.467 15 O -0.518 6.518 16 C -0.152 4.152 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.085 3.915 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.057 0.943 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.400 0.600 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.106 0.894 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.075 -8.132 -8.509 33.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.179 4.179 4 C 0.304 3.696 5 O -0.411 6.411 6 N -0.354 5.354 7 C -0.052 4.052 8 C -0.031 4.031 9 O -0.286 6.286 10 C 0.010 3.990 11 H 0.089 0.911 12 C 0.007 3.993 13 N -0.388 5.388 14 C 0.319 3.681 15 O -0.393 6.393 16 C -0.303 4.303 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.038 4.038 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.076 0.924 37 H 0.128 0.872 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.234 0.766 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.124 0.876 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -29.120 -9.173 -9.979 32.120 hybrid contribution -1.285 1.192 2.271 2.869 sum -30.406 -7.981 -7.708 32.367 Atomic orbital electron populations 1.21792 0.95296 1.02159 1.01783 1.21304 0.95406 0.94448 1.03719 1.21761 0.91383 1.00482 1.04273 1.20855 0.90507 0.82849 0.75431 1.90725 1.70391 1.30743 1.49265 1.48187 1.06751 1.06125 1.74334 1.22599 0.97455 0.84308 1.00870 1.23067 0.81840 1.01160 0.97020 1.88082 1.18274 1.28972 1.93287 1.22748 0.93054 0.84943 0.98283 0.91074 1.21192 0.89627 0.97318 0.91117 1.45844 1.08849 1.56994 1.27143 1.20300 0.81261 0.79558 0.86988 1.90706 1.53433 1.52231 1.42889 1.23520 1.06962 1.01624 0.98206 1.85396 0.93795 1.69984 1.34174 1.22875 0.96373 1.38981 1.10173 0.90926 1.24989 0.94973 0.96027 0.97580 1.70019 0.99697 1.43709 1.36858 0.86168 0.77987 0.79559 0.81775 1.20291 1.20753 1.19715 1.22206 0.79783 1.02256 0.99577 0.92260 0.92639 0.92656 0.91156 0.91151 0.88842 0.88806 0.90027 0.88597 0.92437 0.87243 0.89719 0.90386 0.76566 0.89153 0.89246 0.92194 0.87569 0.89989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.91 37.16 0.37 -0.25 16 2 C -0.11 -0.66 5.22 -26.73 -0.14 -0.80 16 3 C -0.14 -0.69 4.07 -27.88 -0.11 -0.80 16 4 C 0.51 4.46 7.71 -10.98 -0.08 4.38 16 5 O -0.54 -6.83 15.45 5.55 0.09 -6.74 16 6 N -0.62 -4.63 3.01 -172.02 -0.52 -5.15 16 7 C 0.07 0.32 6.57 -3.32 -0.02 0.30 16 8 C 0.05 0.25 7.00 37.53 0.26 0.51 16 9 O -0.37 -3.28 10.33 -35.23 -0.36 -3.65 16 10 C 0.07 0.61 2.81 -26.58 -0.07 0.54 16 11 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 12 C 0.13 1.54 5.34 -4.04 -0.02 1.52 16 13 N -0.73 -10.03 5.51 -60.29 -0.33 -10.36 16 14 C 0.53 10.08 7.85 -10.99 -0.09 10.00 16 15 O -0.52 -11.89 15.86 5.56 0.09 -11.81 16 16 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 17 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 18 C -0.54 -15.37 9.50 30.94 0.29 -15.08 16 19 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.31 13.22 55.49 0.73 -25.57 16 22 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 C 0.08 0.73 5.92 -3.53 -0.02 0.71 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.05 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 31 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 32 H 0.09 0.30 7.67 -51.92 -0.40 -0.10 16 33 H 0.09 0.30 8.01 -51.93 -0.42 -0.11 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.10 0.18 6.05 -51.93 -0.31 -0.13 16 36 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.40 4.48 8.47 -40.82 -0.35 4.13 16 41 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 42 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.11 1.04 7.08 -51.93 -0.37 0.67 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 385.69 15.07 5.81 5.81 Total: -1.00 -37.35 385.69 -8.54 -45.89 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -7.30 Total: -1.18 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 0.49 Total: 0.15 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: -0.12 Total: -41.08 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.19 Total: -22.20 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.35 -8.54 -45.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001064764114.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.541 kcal (2) G-P(sol) polarization free energy of solvation -37.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds