Wall clock time and date at job start Tue Mar 31 2020 05:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47256 * 2 1 4 4 C 1.50702 * 109.47204 * 179.97438 * 3 2 1 5 5 O 1.21285 * 119.99876 * 359.97438 * 4 3 2 6 6 N 1.34776 * 120.00236 * 179.97438 * 4 3 2 7 7 C 1.47150 * 120.97833 * 0.02562 * 6 4 3 8 8 C 1.53296 * 108.38220 * 230.50845 * 7 6 4 9 9 O 1.42958 * 109.22522 * 307.70103 * 8 7 6 10 10 C 1.42964 * 114.16708 * 62.58168 * 9 8 7 11 11 H 1.08993 * 109.55673 * 57.36481 * 10 9 8 12 12 C 1.52999 * 109.51080 * 177.49503 * 10 9 8 13 13 N 1.46495 * 109.47401 * 299.74265 * 12 10 9 14 14 C 1.34779 * 120.00299 * 180.02562 * 13 12 10 15 15 O 1.21283 * 119.99753 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99843 * 180.02562 * 14 13 12 17 17 S 1.81001 * 109.46896 * 179.97438 * 16 14 13 18 18 C 1.76192 * 100.00053 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00436 * 0.02562 * 18 17 16 20 20 C 1.38805 * 119.99929 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00253 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99752 * 179.72153 * 20 18 17 23 23 H 1.48497 * 109.47323 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46790 * 120.00306 * 22 20 18 25 25 H 1.48501 * 109.47364 * 240.00335 * 22 20 18 26 26 C 1.47154 * 120.98456 * 179.97438 * 6 4 3 27 27 H 1.09001 * 109.47024 * 59.99959 * 1 2 3 28 28 H 1.08997 * 109.47409 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47473 * 300.00153 * 1 2 3 30 30 H 1.09002 * 109.47226 * 240.00314 * 2 1 3 31 31 H 1.09000 * 109.47631 * 120.00494 * 2 1 3 32 32 H 1.08999 * 109.47145 * 60.00333 * 3 2 1 33 33 H 1.09001 * 109.47137 * 299.99971 * 3 2 1 34 34 H 1.08998 * 109.68701 * 350.23922 * 7 6 4 35 35 H 1.09009 * 109.67954 * 110.75455 * 7 6 4 36 36 H 1.08999 * 109.51313 * 67.62786 * 8 7 6 37 37 H 1.09002 * 109.51163 * 187.72470 * 8 7 6 38 38 H 1.09003 * 109.46848 * 179.74482 * 12 10 9 39 39 H 1.09003 * 109.47502 * 59.74520 * 12 10 9 40 40 H 0.97004 * 119.99811 * 0.02562 * 13 12 10 41 41 H 1.08998 * 109.46989 * 60.00366 * 16 14 13 42 42 H 1.08996 * 109.47123 * 299.99392 * 16 14 13 43 43 H 0.97000 * 120.00481 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.67721 * 9.76349 * 26 6 4 45 45 H 1.09001 * 109.68029 * 249.21806 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1533 0.3921 0.0015 6 7 4.2209 2.6096 0.0002 7 6 3.5071 3.8964 -0.0003 8 6 4.0816 4.7675 -1.1232 9 8 5.5036 4.8303 -0.9896 10 6 6.1602 3.5673 -1.1223 11 1 5.9125 3.1270 -2.0880 12 6 7.6741 3.7658 -1.0242 13 7 8.1204 4.6570 -2.0978 14 6 9.4251 4.9761 -2.2101 15 8 10.2295 4.5256 -1.4222 16 6 9.8840 5.8934 -3.3142 17 16 11.6750 6.1280 -3.1983 18 6 11.9314 7.2077 -4.5668 19 1 11.0942 7.5170 -5.1749 20 6 13.2093 7.6618 -4.8626 21 7 14.2296 7.2853 -4.1212 22 14 13.4822 8.8004 -6.3182 23 1 12.1842 9.0664 -6.9888 24 1 14.0647 10.0809 -5.8426 25 1 14.4145 8.1594 -7.2801 26 6 5.6922 2.6348 0.0014 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 2.4445 3.7268 -0.1742 35 1 3.6470 4.3942 0.9594 36 1 3.8256 4.3320 -2.0891 37 1 3.6640 5.7720 -1.0546 38 1 8.1739 2.8019 -1.1209 39 1 7.9209 4.2078 -0.0588 40 1 7.4769 5.0175 -2.7278 41 1 9.3847 6.8573 -3.2168 42 1 9.6369 5.4519 -4.2797 43 1 15.1227 7.6023 -4.3282 44 1 6.0766 1.6297 -0.1715 45 1 6.0522 3.0060 0.9609 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001064764115.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:35 Heat of formation + Delta-G solvation = -125.435723 kcal Electronic energy + Delta-G solvation = -25341.838289 eV Core-core repulsion = 21485.438073 eV Total energy + Delta-G solvation = -3856.400216 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.91298 -39.35253 -38.64480 -35.40511 -34.97523 -34.63461 -32.41509 -32.21130 -29.63959 -29.25406 -27.96377 -25.75042 -25.35346 -23.81305 -22.45593 -21.56780 -20.33748 -19.54498 -17.94628 -17.66041 -17.23298 -16.59759 -16.54935 -16.24325 -15.95786 -15.39386 -15.06345 -14.93708 -14.84650 -14.79024 -14.29194 -13.83566 -13.71369 -13.59292 -13.19941 -13.05700 -12.83999 -12.57498 -12.53498 -12.27236 -12.22477 -11.78700 -11.70393 -11.61079 -11.23956 -11.18160 -11.05869 -11.00179 -10.74479 -10.61287 -10.21739 -9.79037 -9.42686 -9.06475 -9.05388 -8.87667 -8.20862 -6.47835 -6.20165 -3.90355 2.14854 2.31770 3.04475 3.11244 3.19469 3.22682 3.29436 3.34189 3.71461 3.93707 4.21055 4.21899 4.31124 4.42146 4.44507 4.46350 4.59374 4.67795 4.70158 4.85711 4.96738 5.06997 5.09726 5.10020 5.15069 5.20213 5.21615 5.25401 5.39256 5.50242 5.57119 5.61795 5.65434 5.79224 5.81595 5.87862 5.92526 6.17161 6.56341 6.67659 6.81997 7.61537 7.67248 7.73151 8.37103 8.63345 9.25276 10.87350 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.033907 B = 0.001785 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.597027 B =15683.706847 C =15997.619042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.139 4.139 4 C 0.515 3.485 5 O -0.535 6.535 6 N -0.619 5.619 7 C 0.071 3.929 8 C 0.047 3.953 9 O -0.367 6.367 10 C 0.068 3.932 11 H 0.071 0.929 12 C 0.133 3.867 13 N -0.733 5.733 14 C 0.533 3.467 15 O -0.519 6.519 16 C -0.152 4.152 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.085 3.915 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.110 0.890 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.401 0.599 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.106 0.894 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.021 -8.834 7.853 33.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.179 4.179 4 C 0.304 3.696 5 O -0.411 6.411 6 N -0.354 5.354 7 C -0.052 4.052 8 C -0.031 4.031 9 O -0.286 6.286 10 C 0.010 3.990 11 H 0.089 0.911 12 C 0.008 3.992 13 N -0.388 5.388 14 C 0.319 3.681 15 O -0.393 6.393 16 C -0.303 4.303 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.038 4.038 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.128 0.872 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.235 0.765 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.124 0.876 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -29.059 -9.996 9.249 32.092 hybrid contribution -1.297 1.382 -2.139 2.858 sum -30.357 -8.614 7.110 32.346 Atomic orbital electron populations 1.21791 0.95297 1.02157 1.01786 1.21302 0.95407 0.94448 1.03718 1.21759 0.91379 1.00481 1.04275 1.20855 0.90509 0.82845 0.75428 1.90725 1.70394 1.30737 1.49278 1.48181 1.06747 1.06111 1.74332 1.22514 0.97441 0.84333 1.00956 1.22985 0.81847 1.01164 0.97085 1.88073 1.18319 1.28981 1.93216 1.22760 0.93027 0.84962 0.98298 0.91072 1.21201 0.89701 0.95682 0.92648 1.45823 1.08879 1.51152 1.32897 1.20306 0.81290 0.80878 0.85654 1.90706 1.52852 1.52816 1.42929 1.23517 1.07007 1.00721 0.99041 1.85397 0.93946 1.62761 1.41298 1.22917 0.96426 1.33352 1.15633 0.90870 1.24993 0.94954 0.96424 0.97231 1.70028 0.99580 1.42769 1.37908 0.86115 0.78335 0.79847 0.81168 1.19637 1.20581 1.20579 1.22218 0.79764 1.02258 0.99588 0.92648 0.92260 0.92649 0.91153 0.91154 0.88802 0.88844 0.88600 0.90046 0.92472 0.87200 0.89746 0.90484 0.76493 0.89150 0.89247 0.92250 0.87572 0.89978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.91 37.15 0.37 -0.24 16 2 C -0.11 -0.65 5.22 -26.74 -0.14 -0.79 16 3 C -0.14 -0.69 4.07 -27.88 -0.11 -0.80 16 4 C 0.51 4.46 7.71 -10.99 -0.08 4.37 16 5 O -0.54 -6.82 15.45 5.55 0.09 -6.73 16 6 N -0.62 -4.63 3.02 -172.25 -0.52 -5.15 16 7 C 0.07 0.32 6.54 -3.53 -0.02 0.29 16 8 C 0.05 0.25 6.98 37.31 0.26 0.51 16 9 O -0.37 -3.26 10.14 -35.23 -0.36 -3.62 16 10 C 0.07 0.61 2.86 -26.56 -0.08 0.53 16 11 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 12 C 0.13 1.54 5.37 -4.04 -0.02 1.52 16 13 N -0.73 -10.04 5.45 -60.29 -0.33 -10.37 16 14 C 0.53 10.09 7.85 -10.98 -0.09 10.00 16 15 O -0.52 -11.91 15.86 5.55 0.09 -11.82 16 16 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 17 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 18 C -0.53 -15.35 9.50 30.94 0.29 -15.06 16 19 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.31 13.22 55.49 0.73 -25.57 16 22 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 26 C 0.08 0.73 5.93 -3.51 -0.02 0.71 16 27 H 0.05 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.05 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 31 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 32 H 0.09 0.30 8.02 -51.93 -0.42 -0.11 16 33 H 0.09 0.30 7.66 -51.93 -0.40 -0.10 16 34 H 0.10 0.18 6.05 -51.93 -0.31 -0.13 16 35 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 36 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.40 4.52 8.36 -40.82 -0.34 4.18 16 41 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 42 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 43 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.11 1.03 7.08 -51.93 -0.37 0.66 16 45 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 385.37 15.07 5.81 5.81 Total: -1.00 -37.34 385.37 -8.54 -45.88 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -7.30 Total: -1.20 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 0.48 Total: 0.16 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: -0.11 Total: -41.09 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.18 Total: -22.17 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.34 -8.54 -45.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001064764115.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.553 kcal (2) G-P(sol) polarization free energy of solvation -37.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds