Wall clock time and date at job start Tue Mar 31 2020 05:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46569 * 2 1 4 4 C 1.50696 * 109.46948 * 120.00185 * 2 1 3 5 5 O 1.21285 * 119.99767 * 264.59407 * 4 2 1 6 6 N 1.34775 * 120.00072 * 84.32271 * 4 2 1 7 7 C 1.47153 * 120.98137 * 354.89948 * 6 4 2 8 8 C 1.53716 * 108.15957 * 129.43284 * 7 6 4 9 9 O 1.42962 * 109.14835 * 52.53857 * 8 7 6 10 10 C 1.42965 * 114.16514 * 297.28632 * 9 8 7 11 11 H 1.08996 * 109.51291 * 302.65683 * 10 9 8 12 12 C 1.52998 * 109.51021 * 182.50178 * 10 9 8 13 13 N 1.46504 * 109.47079 * 65.25695 * 12 10 9 14 14 C 1.34771 * 119.99952 * 179.97438 * 13 12 10 15 15 O 1.21286 * 120.00238 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99727 * 179.97438 * 14 13 12 17 17 S 1.81007 * 109.46761 * 180.02562 * 16 14 13 18 18 C 1.76200 * 99.99509 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00551 * 0.02562 * 18 17 16 20 20 C 1.38805 * 119.99806 * 179.97438 * 18 17 16 21 21 N 1.31632 * 119.99724 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99942 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47111 * 60.00463 * 22 20 18 24 24 H 1.48502 * 109.47031 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47083 * 300.00111 * 22 20 18 26 26 C 1.47153 * 120.98163 * 175.18160 * 6 4 2 27 27 H 1.08998 * 109.46818 * 180.52124 * 1 2 3 28 28 H 1.09000 * 109.47184 * 300.52845 * 1 2 3 29 29 H 1.09006 * 109.46959 * 60.52625 * 1 2 3 30 30 H 1.08997 * 109.47196 * 240.00215 * 2 1 3 31 31 H 1.09009 * 109.46516 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.47303 * 299.99604 * 3 2 1 33 33 H 1.08997 * 109.47185 * 60.00209 * 3 2 1 34 34 H 1.08995 * 109.68093 * 249.21149 * 7 6 4 35 35 H 1.08999 * 109.67858 * 9.77152 * 7 6 4 36 36 H 1.09007 * 109.65648 * 292.57053 * 8 7 6 37 37 H 1.09001 * 109.48640 * 172.40332 * 8 7 6 38 38 H 1.09007 * 109.46827 * 185.25728 * 12 10 9 39 39 H 1.08999 * 109.47721 * 305.25564 * 12 10 9 40 40 H 0.97001 * 119.99977 * 359.97438 * 13 12 10 41 41 H 1.08996 * 109.47138 * 299.99983 * 16 14 13 42 42 H 1.08998 * 109.47189 * 60.00757 * 16 14 13 43 43 H 0.97005 * 119.99877 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.68334 * 350.24063 * 26 6 4 45 45 H 1.09000 * 109.67860 * 110.78606 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.3278 -0.0742 2.2198 6 7 2.1481 -2.0532 1.2332 7 6 1.6866 -2.8557 0.0893 8 6 2.8246 -3.8043 -0.3206 9 8 3.2651 -4.5321 0.8283 10 6 3.8161 -3.7142 1.8634 11 1 4.6503 -3.1364 1.4657 12 6 4.3077 -4.6017 3.0087 13 7 5.4229 -5.4289 2.5414 14 6 6.0198 -6.2941 3.3848 15 8 5.6335 -6.3882 4.5307 16 6 7.1666 -7.1454 2.9039 17 16 7.7483 -8.1952 4.2589 18 6 9.0505 -9.0559 3.4415 19 1 9.2665 -8.8492 2.4038 20 6 9.7994 -9.9990 4.1318 21 7 9.5364 -10.2506 5.3968 22 14 11.1804 -10.9110 3.2655 23 1 12.1900 -9.9359 2.7811 24 1 11.8206 -11.8569 4.2146 25 1 10.6279 -11.6659 2.1121 26 6 2.7341 -2.7606 2.3828 27 1 -0.3633 -1.0276 0.0093 28 1 -0.3633 0.5220 0.8852 29 1 -0.3633 0.5057 -0.8947 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 0.8086 -3.4338 0.3769 35 1 1.4373 -2.1982 -0.7435 36 1 3.6552 -3.2266 -0.7263 37 1 2.4624 -4.5013 -1.0764 38 1 4.6416 -3.9753 3.8360 39 1 3.4944 -5.2447 3.3450 40 1 5.7316 -5.3539 1.6248 41 1 6.8322 -7.7720 2.0772 42 1 7.9799 -6.5027 2.5670 43 1 10.0595 -10.9099 5.8791 44 1 3.1785 -2.0402 3.0695 45 1 1.9596 -3.3294 2.8974 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001064865635.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:38 Heat of formation + Delta-G solvation = -120.944404 kcal Electronic energy + Delta-G solvation = -25645.130674 eV Core-core repulsion = 21788.925216 eV Total energy + Delta-G solvation = -3856.205458 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.01516 -39.40098 -38.66777 -35.49170 -34.93201 -34.66679 -32.41121 -32.10809 -29.62423 -28.56455 -27.71897 -26.29613 -25.42432 -24.01855 -23.18704 -21.50585 -20.29595 -19.35520 -18.08667 -17.81726 -17.23053 -16.55710 -16.42394 -16.00042 -15.84844 -15.26806 -15.01322 -14.97066 -14.78746 -14.68620 -14.33134 -13.91615 -13.78882 -13.27392 -13.07934 -13.00838 -12.81438 -12.74379 -12.54578 -12.50190 -12.28385 -11.78934 -11.74415 -11.70513 -11.50243 -11.17296 -11.02731 -11.02503 -10.75543 -10.61841 -10.10097 -9.80830 -9.42985 -9.05371 -9.04343 -8.88490 -8.21808 -6.47838 -6.19687 -3.90147 2.14541 2.31652 3.04635 3.10660 3.19530 3.24761 3.28696 3.32292 3.70658 3.88020 4.19764 4.22287 4.25578 4.34824 4.43515 4.44063 4.59504 4.65874 4.69466 4.79812 5.07400 5.08911 5.09931 5.15226 5.17327 5.20609 5.20824 5.30639 5.36508 5.40820 5.49288 5.60166 5.61658 5.73651 5.81634 5.86486 5.92132 6.16756 6.56841 6.66736 6.82415 7.61020 7.67629 7.71893 8.36847 8.62693 9.25352 10.87668 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.032908 B = 0.001865 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.652006 B =15009.054395 C =15249.135251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C -0.136 4.136 4 C 0.520 3.480 5 O -0.534 6.534 6 N -0.617 5.617 7 C 0.069 3.931 8 C 0.046 3.954 9 O -0.367 6.367 10 C 0.069 3.931 11 H 0.071 0.929 12 C 0.132 3.868 13 N -0.734 5.734 14 C 0.533 3.467 15 O -0.518 6.518 16 C -0.152 4.152 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.085 3.915 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.400 0.600 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.105 0.895 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.846 20.590 -17.337 32.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.136 4.136 3 C -0.193 4.193 4 C 0.309 3.691 5 O -0.409 6.409 6 N -0.352 5.352 7 C -0.054 4.054 8 C -0.031 4.031 9 O -0.286 6.286 10 C 0.010 3.990 11 H 0.089 0.911 12 C 0.007 3.993 13 N -0.388 5.388 14 C 0.319 3.681 15 O -0.393 6.393 16 C -0.303 4.303 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.200 1.200 26 C -0.038 4.038 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.116 0.884 36 H 0.076 0.924 37 H 0.128 0.872 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.234 0.766 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.124 0.876 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.307 20.486 -14.681 31.748 hybrid contribution 1.426 -0.278 -2.493 2.885 sum -17.881 20.208 -17.174 31.985 Atomic orbital electron populations 1.21782 0.92367 1.02654 1.03310 1.21334 0.98023 0.98052 0.96200 1.21664 1.01469 0.93481 1.02729 1.20788 0.77200 0.81269 0.89863 1.90716 1.49613 1.65347 1.35257 1.48165 1.62076 1.06002 1.18934 1.22659 0.98334 0.94943 0.89487 1.23077 0.95869 0.95511 0.88679 1.88082 1.80581 1.33119 1.26802 1.22750 0.95033 0.91969 0.89279 0.91079 1.21192 0.90173 0.93601 0.94284 1.45847 1.35478 1.42309 1.15200 1.20304 0.83152 0.79242 0.85412 1.90707 1.63932 1.66347 1.18267 1.23521 0.98248 1.01897 1.06642 1.85396 1.41305 1.45100 1.11518 1.22832 1.19317 1.26461 0.99820 0.90977 1.24994 0.97492 0.96177 0.94934 1.70012 1.39416 1.32397 1.08459 0.86222 0.80960 0.79204 0.79094 1.19961 1.20820 1.19953 1.22208 0.96798 0.95848 0.88921 0.92108 0.91707 0.91090 0.88949 0.92279 0.91719 0.91332 0.89991 0.88428 0.92425 0.87249 0.89719 0.90377 0.76566 0.89155 0.89249 0.92140 0.87633 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.61 9.00 37.16 0.33 -0.27 16 2 C -0.11 -0.63 2.40 -91.77 -0.22 -0.85 16 3 C -0.14 -0.80 8.72 37.16 0.32 -0.48 16 4 C 0.52 4.67 6.82 -10.99 -0.07 4.59 16 5 O -0.53 -6.93 15.59 5.55 0.09 -6.85 16 6 N -0.62 -4.73 3.01 -172.02 -0.52 -5.25 16 7 C 0.07 0.33 6.00 -3.31 -0.02 0.31 16 8 C 0.05 0.25 7.00 37.53 0.26 0.51 16 9 O -0.37 -3.29 10.33 -35.23 -0.36 -3.65 16 10 C 0.07 0.61 2.81 -26.58 -0.07 0.54 16 11 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 12 C 0.13 1.54 5.34 -4.04 -0.02 1.52 16 13 N -0.73 -10.02 5.51 -60.29 -0.33 -10.35 16 14 C 0.53 10.08 7.85 -10.99 -0.09 9.99 16 15 O -0.52 -11.89 15.86 5.55 0.09 -11.80 16 16 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 17 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 18 C -0.54 -15.37 9.50 30.94 0.29 -15.07 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 22 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 C 0.09 0.74 5.91 -3.53 -0.02 0.72 16 27 H 0.06 0.22 7.35 -51.93 -0.38 -0.16 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 0.32 6.50 -51.93 -0.34 -0.02 16 31 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.51 7.87 -51.93 -0.41 0.10 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.10 0.23 5.25 -51.93 -0.27 -0.04 16 36 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 1.00 8.14 -51.92 -0.42 0.57 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.40 4.47 8.47 -40.82 -0.35 4.13 16 41 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 42 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.11 1.04 7.12 -51.93 -0.37 0.67 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 382.50 15.07 5.76 5.76 Total: -1.00 -37.28 382.50 -8.11 -45.39 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -7.16 Total: -0.91 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 0.82 Total: 0.62 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: -0.12 Total: -41.18 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.19 Total: -22.30 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.28 -8.11 -45.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001064865635.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.558 kcal (2) G-P(sol) polarization free energy of solvation -37.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds