Wall clock time and date at job start Tue Mar 31 2020 05:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46569 * 2 1 4 4 C 1.50696 * 109.46948 * 120.00185 * 2 1 3 5 5 O 1.21285 * 119.99767 * 264.59407 * 4 2 1 6 6 N 1.34775 * 120.00072 * 84.32271 * 4 2 1 7 7 C 1.47153 * 120.98137 * 354.89948 * 6 4 2 8 8 C 1.53716 * 108.15957 * 129.43284 * 7 6 4 9 9 O 1.42962 * 109.14835 * 52.53857 * 8 7 6 10 10 C 1.42965 * 114.16514 * 297.28632 * 9 8 7 11 11 H 1.08996 * 109.51291 * 302.65683 * 10 9 8 12 12 C 1.52998 * 109.51021 * 182.50178 * 10 9 8 13 13 N 1.46504 * 109.47079 * 65.25695 * 12 10 9 14 14 C 1.34771 * 119.99952 * 179.97438 * 13 12 10 15 15 O 1.21286 * 120.00238 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99727 * 179.97438 * 14 13 12 17 17 S 1.81007 * 109.46761 * 180.02562 * 16 14 13 18 18 C 1.76200 * 99.99509 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00551 * 0.02562 * 18 17 16 20 20 C 1.38805 * 119.99806 * 179.97438 * 18 17 16 21 21 N 1.31632 * 119.99724 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99942 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47111 * 60.00463 * 22 20 18 24 24 H 1.48502 * 109.47031 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47083 * 300.00111 * 22 20 18 26 26 C 1.47153 * 120.98163 * 175.18160 * 6 4 2 27 27 H 1.08998 * 109.46818 * 180.52124 * 1 2 3 28 28 H 1.09000 * 109.47184 * 300.52845 * 1 2 3 29 29 H 1.09006 * 109.46959 * 60.52625 * 1 2 3 30 30 H 1.08997 * 109.47196 * 240.00215 * 2 1 3 31 31 H 1.09009 * 109.46516 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.47303 * 299.99604 * 3 2 1 33 33 H 1.08997 * 109.47185 * 60.00209 * 3 2 1 34 34 H 1.08995 * 109.68093 * 249.21149 * 7 6 4 35 35 H 1.08999 * 109.67858 * 9.77152 * 7 6 4 36 36 H 1.09007 * 109.65648 * 292.57053 * 8 7 6 37 37 H 1.09001 * 109.48640 * 172.40332 * 8 7 6 38 38 H 1.09007 * 109.46827 * 185.25728 * 12 10 9 39 39 H 1.08999 * 109.47721 * 305.25564 * 12 10 9 40 40 H 0.97001 * 119.99977 * 359.97438 * 13 12 10 41 41 H 1.08996 * 109.47138 * 299.99983 * 16 14 13 42 42 H 1.08998 * 109.47189 * 60.00757 * 16 14 13 43 43 H 0.97005 * 119.99877 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.68334 * 350.24063 * 26 6 4 45 45 H 1.09000 * 109.67860 * 110.78606 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.3278 -0.0742 2.2198 6 7 2.1481 -2.0532 1.2332 7 6 1.6866 -2.8557 0.0893 8 6 2.8246 -3.8043 -0.3206 9 8 3.2651 -4.5321 0.8283 10 6 3.8161 -3.7142 1.8634 11 1 4.6503 -3.1364 1.4657 12 6 4.3077 -4.6017 3.0087 13 7 5.4229 -5.4289 2.5414 14 6 6.0198 -6.2941 3.3848 15 8 5.6335 -6.3882 4.5307 16 6 7.1666 -7.1454 2.9039 17 16 7.7483 -8.1952 4.2589 18 6 9.0505 -9.0559 3.4415 19 1 9.2665 -8.8492 2.4038 20 6 9.7994 -9.9990 4.1318 21 7 9.5364 -10.2506 5.3968 22 14 11.1804 -10.9110 3.2655 23 1 12.1900 -9.9359 2.7811 24 1 11.8206 -11.8569 4.2146 25 1 10.6279 -11.6659 2.1121 26 6 2.7341 -2.7606 2.3828 27 1 -0.3633 -1.0276 0.0093 28 1 -0.3633 0.5220 0.8852 29 1 -0.3633 0.5057 -0.8947 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 0.8086 -3.4338 0.3769 35 1 1.4373 -2.1982 -0.7435 36 1 3.6552 -3.2266 -0.7263 37 1 2.4624 -4.5013 -1.0764 38 1 4.6416 -3.9753 3.8360 39 1 3.4944 -5.2447 3.3450 40 1 5.7316 -5.3539 1.6248 41 1 6.8322 -7.7720 2.0772 42 1 7.9799 -6.5027 2.5670 43 1 10.0595 -10.9099 5.8791 44 1 3.1785 -2.0402 3.0695 45 1 1.9596 -3.3294 2.8974 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001064865635.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:38 Heat of formation + Delta-G solvation = -149.036765 kcal Electronic energy + Delta-G solvation = -25646.348850 eV Core-core repulsion = 21788.925216 eV Total energy + Delta-G solvation = -3857.423634 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.66721 -40.64108 -39.58017 -36.32478 -35.68512 -35.42346 -34.57572 -33.04030 -30.93554 -29.31221 -28.13618 -27.71750 -27.05389 -24.53274 -23.90083 -22.24823 -21.64760 -19.94885 -19.82687 -18.62402 -17.96155 -17.84892 -17.48696 -16.87219 -16.79779 -16.61625 -16.41600 -16.06627 -15.71450 -15.58505 -15.18597 -15.00403 -14.58866 -14.47971 -14.34052 -14.28672 -13.67316 -13.40606 -13.28578 -13.16282 -13.15382 -12.98589 -12.87334 -12.85223 -12.61401 -12.35527 -12.12503 -11.93940 -11.80180 -11.72851 -11.26789 -11.12096 -11.03135 -10.72945 -10.27535 -10.17777 -9.69389 -8.66231 -8.33637 -6.12005 1.26146 1.44780 1.45496 1.50036 1.56424 1.60056 1.74330 2.26442 2.30163 2.55781 3.00289 3.31828 3.38137 3.61390 3.69934 3.82473 3.89406 3.94034 3.99613 4.02617 4.16805 4.26740 4.29588 4.32493 4.46327 4.51452 4.56323 4.60413 4.73785 4.74936 4.81919 4.83817 4.89335 4.92877 5.01953 5.21385 5.28060 5.32267 5.36511 5.42412 6.05770 6.20453 6.24154 6.46540 7.03321 7.07300 7.21402 8.75322 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.032908 B = 0.001865 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.652006 B =15009.054395 C =15249.135251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.109 4.109 3 C -0.136 4.136 4 C 0.512 3.488 5 O -0.585 6.585 6 N -0.615 5.615 7 C 0.067 3.933 8 C 0.041 3.959 9 O -0.386 6.386 10 C 0.087 3.913 11 H 0.079 0.921 12 C 0.131 3.869 13 N -0.707 5.707 14 C 0.535 3.465 15 O -0.566 6.566 16 C -0.128 4.128 17 S -0.152 6.152 18 C -0.547 4.547 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.262 1.262 24 H -0.279 1.279 25 H -0.261 1.261 26 C 0.086 3.914 27 H 0.070 0.930 28 H 0.044 0.956 29 H 0.093 0.907 30 H 0.123 0.877 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.128 0.872 36 H 0.066 0.934 37 H 0.133 0.867 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.417 0.583 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.271 0.729 44 H 0.089 0.911 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.133 20.938 -21.390 35.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.130 4.130 3 C -0.194 4.194 4 C 0.303 3.697 5 O -0.465 6.465 6 N -0.349 5.349 7 C -0.055 4.055 8 C -0.036 4.036 9 O -0.305 6.305 10 C 0.028 3.972 11 H 0.097 0.903 12 C 0.006 3.994 13 N -0.361 5.361 14 C 0.320 3.680 15 O -0.444 6.444 16 C -0.279 4.279 17 S 0.075 5.925 18 C -0.695 4.695 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.186 1.186 24 H -0.204 1.204 25 H -0.186 1.186 26 C -0.038 4.038 27 H 0.089 0.911 28 H 0.063 0.937 29 H 0.112 0.888 30 H 0.141 0.859 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.146 0.854 36 H 0.085 0.915 37 H 0.150 0.850 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.253 0.747 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.080 0.920 44 H 0.107 0.893 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.624 20.849 -18.818 34.263 hybrid contribution 1.397 -0.298 -1.304 1.934 sum -18.227 20.551 -20.123 34.052 Atomic orbital electron populations 1.21795 0.91176 1.03365 1.03497 1.21417 0.98834 0.97431 0.95326 1.21674 1.00823 0.94035 1.02833 1.21535 0.76344 0.81483 0.90361 1.90693 1.51959 1.66471 1.37334 1.48283 1.61317 1.05975 1.19277 1.22909 0.98204 0.95115 0.89237 1.23364 0.96348 0.96129 0.87761 1.88051 1.80784 1.34017 1.27635 1.22435 0.95202 0.91021 0.88565 0.90291 1.21289 0.89001 0.93390 0.95696 1.45574 1.34852 1.40521 1.15186 1.20068 0.82959 0.79753 0.85178 1.90698 1.65317 1.68069 1.20346 1.23357 0.99414 1.01319 1.03853 1.85588 1.42430 1.47590 1.16860 1.23181 1.19357 1.26676 1.00291 0.89828 1.26150 1.00381 0.97056 0.95648 1.70184 1.40926 1.33266 1.10395 0.84991 0.77182 0.77796 0.77940 1.18645 1.20434 1.18601 1.22068 0.96842 0.95480 0.89453 0.91102 0.93680 0.88805 0.85879 0.93321 0.89183 0.93606 0.89440 0.85381 0.91542 0.84955 0.90028 0.91374 0.74654 0.87173 0.87120 0.92003 0.89296 0.90073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.00 71.98 0.65 -0.18 16 2 C -0.11 -0.95 2.40 -11.54 -0.03 -0.98 16 3 C -0.14 -1.44 8.72 71.98 0.63 -0.81 16 4 C 0.51 8.76 6.82 87.66 0.60 9.36 16 5 O -0.58 -15.74 15.59 -3.05 -0.05 -15.79 16 6 N -0.62 -8.48 3.01 -816.54 -2.46 -10.94 16 7 C 0.07 0.41 6.00 86.50 0.52 0.93 16 8 C 0.04 0.30 7.00 72.22 0.51 0.80 16 9 O -0.39 -5.95 10.33 -148.98 -1.54 -7.49 16 10 C 0.09 1.43 2.81 30.69 0.09 1.52 16 11 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 12 C 0.13 2.98 5.34 86.38 0.46 3.44 16 13 N -0.71 -18.39 5.51 -463.04 -2.55 -20.94 16 14 C 0.53 20.06 7.85 87.66 0.69 20.74 16 15 O -0.57 -26.65 15.86 -3.05 -0.05 -26.70 16 16 C -0.13 -5.13 6.16 71.24 0.44 -4.69 16 17 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 18 C -0.55 -31.41 9.50 67.96 0.65 -30.76 16 19 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 20 C 0.01 0.71 5.49 84.86 0.47 1.17 16 21 N -0.91 -56.36 13.22 21.65 0.29 -56.08 16 22 Si 1.00 43.66 29.55 68.60 2.03 45.69 16 23 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 24 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 26 C 0.09 1.46 5.91 86.35 0.51 1.97 16 27 H 0.07 0.29 7.35 -2.39 -0.02 0.27 16 28 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.09 0.16 8.14 -2.38 -0.02 0.14 16 30 H 0.12 0.32 6.50 -2.39 -0.02 0.30 16 31 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.04 0.69 7.87 -2.39 -0.02 0.67 16 34 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.13 0.01 5.25 -2.39 -0.01 -0.01 16 36 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 37 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 39 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.42 8.25 8.47 -92.71 -0.79 7.46 16 41 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 42 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 43 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 44 H 0.09 1.83 7.12 -2.39 -0.02 1.82 16 45 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -85.04 382.50 0.88 -84.16 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.21 Total: 15.25 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 6.17 Total: 2.52 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -4.72 Total: -87.96 kcal Atomic # 8 Polarization: -48.34 SS G_CDS: -1.64 Total: -49.98 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -85.04 0.88 -84.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001064865635.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.873 kcal (2) G-P(sol) polarization free energy of solvation -85.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds