Wall clock time and date at job start Tue Mar 31 2020 05:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46821 * 2 1 4 4 C 1.50694 * 109.47195 * 119.99968 * 2 1 3 5 5 O 1.21287 * 120.00076 * 274.76813 * 4 2 1 6 6 N 1.34770 * 120.00198 * 94.76940 * 4 2 1 7 7 C 1.47160 * 120.98159 * 354.66749 * 6 4 2 8 8 C 1.53295 * 108.38551 * 230.54950 * 7 6 4 9 9 O 1.42969 * 109.21975 * 307.69788 * 8 7 6 10 10 C 1.42956 * 114.16855 * 62.58307 * 9 8 7 11 11 H 1.08997 * 109.51358 * 57.38954 * 10 9 8 12 12 C 1.53002 * 109.51211 * 177.49385 * 10 9 8 13 13 N 1.46499 * 109.47307 * 299.89469 * 12 10 9 14 14 C 1.34771 * 120.00176 * 179.97438 * 13 12 10 15 15 O 1.21278 * 120.00039 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99950 * 179.72766 * 14 13 12 17 17 S 1.81002 * 109.47204 * 180.02562 * 16 14 13 18 18 C 1.76205 * 100.00156 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99400 * 359.97438 * 18 17 16 20 20 C 1.38795 * 120.00012 * 179.97438 * 18 17 16 21 21 N 1.31630 * 119.99781 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00020 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47121 * 59.99523 * 22 20 18 24 24 H 1.48499 * 109.47356 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46986 * 299.99854 * 22 20 18 26 26 C 1.47168 * 120.94788 * 174.71518 * 6 4 2 27 27 H 1.08997 * 109.46993 * 299.99574 * 1 2 3 28 28 H 1.08998 * 109.47457 * 60.00036 * 1 2 3 29 29 H 1.09001 * 109.46704 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46993 * 240.00426 * 2 1 3 31 31 H 1.08999 * 109.47484 * 304.96879 * 3 2 1 32 32 H 1.09004 * 109.47352 * 64.96502 * 3 2 1 33 33 H 1.09002 * 109.47152 * 184.96689 * 3 2 1 34 34 H 1.09001 * 109.67938 * 110.82448 * 7 6 4 35 35 H 1.08997 * 109.67755 * 350.27407 * 7 6 4 36 36 H 1.08996 * 109.51392 * 187.77658 * 8 7 6 37 37 H 1.09001 * 109.55224 * 67.64055 * 8 7 6 38 38 H 1.09004 * 109.46894 * 179.89601 * 12 10 9 39 39 H 1.08995 * 109.47133 * 59.89722 * 12 10 9 40 40 H 0.97005 * 119.99874 * 0.02562 * 13 12 10 41 41 H 1.09003 * 109.47445 * 300.00074 * 16 14 13 42 42 H 1.09003 * 109.47306 * 59.99837 * 16 14 13 43 43 H 0.97000 * 119.99516 * 179.97438 * 21 20 18 44 44 H 1.09006 * 109.72708 * 9.75351 * 26 6 4 45 45 H 1.08998 * 109.64874 * 249.19955 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.1522 -0.1043 2.2741 6 7 2.3485 -2.0191 1.1711 7 6 2.1026 -2.8032 -0.0497 8 6 1.3427 -4.0767 0.3385 9 8 2.0464 -4.7426 1.3899 10 6 2.1483 -3.9846 2.5977 11 1 1.1502 -3.7218 2.9479 12 6 2.8617 -4.8172 3.6648 13 7 2.0973 -6.0402 3.9220 14 6 2.5385 -6.9321 4.8309 15 8 3.5681 -6.7220 5.4364 16 6 1.7489 -8.1871 5.0998 17 16 2.5936 -9.1728 6.3612 18 6 1.4853 -10.5378 6.4759 19 1 0.5985 -10.5665 5.8602 20 6 1.7521 -11.5762 7.3575 21 7 2.8327 -11.5409 8.1082 22 14 0.5775 -13.0236 7.4785 23 1 0.4779 -13.6922 6.1563 24 1 1.0855 -13.9906 8.4846 25 1 -0.7644 -12.5390 7.8905 26 6 2.9488 -2.7058 2.3261 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6058 1.9814 -0.8421 32 1 1.7511 1.9301 0.9311 33 1 3.1264 1.4439 -0.0890 34 1 3.0529 -3.0694 -0.5126 35 1 1.5049 -2.2175 -0.7480 36 1 1.2715 -4.7361 -0.5265 37 1 0.3414 -3.8143 0.6799 38 1 2.9407 -4.2379 4.5848 39 1 3.8597 -5.0795 3.3139 40 1 1.2739 -6.2083 3.4375 41 1 0.7529 -7.9210 5.4540 42 1 1.6647 -8.7674 4.1809 43 1 3.0189 -12.2663 8.7245 44 1 2.9110 -2.0563 3.2007 45 1 3.9846 -2.9615 2.1027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001064865636.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:42 Heat of formation + Delta-G solvation = -120.843089 kcal Electronic energy + Delta-G solvation = -25672.033157 eV Core-core repulsion = 21815.832092 eV Total energy + Delta-G solvation = -3856.201064 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.01684 -39.40021 -38.66443 -35.47093 -34.94820 -34.64813 -32.40993 -32.11887 -29.63044 -28.57768 -27.74102 -26.32574 -25.42405 -23.95713 -23.18211 -21.57037 -20.29577 -19.25880 -18.14101 -17.80326 -17.20624 -16.56866 -16.38169 -15.98012 -15.82256 -15.38072 -15.04897 -14.94529 -14.78515 -14.60622 -14.30589 -13.96710 -13.79302 -13.23262 -13.16508 -13.07103 -12.82003 -12.74104 -12.54420 -12.48173 -12.23940 -11.79117 -11.72199 -11.69945 -11.49535 -11.16991 -11.02485 -11.02303 -10.75294 -10.60033 -10.11652 -9.80579 -9.42478 -9.05128 -9.04250 -8.87383 -8.21441 -6.47513 -6.19451 -3.89889 2.13759 2.31430 3.04649 3.11389 3.19655 3.24911 3.28955 3.32788 3.71519 3.87756 4.20772 4.22538 4.26007 4.36208 4.43924 4.45942 4.59815 4.66890 4.68844 4.80858 5.07544 5.08710 5.09922 5.15474 5.17302 5.20814 5.22006 5.27724 5.35563 5.40697 5.50557 5.60644 5.62399 5.71815 5.81726 5.86264 5.92673 6.17315 6.56545 6.67936 6.82152 7.61273 7.67361 7.73430 8.37127 8.63589 9.25618 10.87926 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.033205 B = 0.001882 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.034235 B =14875.551968 C =15246.031855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C -0.138 4.138 4 C 0.521 3.479 5 O -0.534 6.534 6 N -0.617 5.617 7 C 0.069 3.931 8 C 0.047 3.953 9 O -0.367 6.367 10 C 0.068 3.932 11 H 0.071 0.929 12 C 0.133 3.867 13 N -0.733 5.733 14 C 0.533 3.467 15 O -0.519 6.519 16 C -0.152 4.152 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.084 3.916 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.057 0.943 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.401 0.599 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.269 0.731 44 H 0.106 0.894 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.520 23.148 -22.665 32.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.136 4.136 3 C -0.196 4.196 4 C 0.310 3.690 5 O -0.410 6.410 6 N -0.352 5.352 7 C -0.054 4.054 8 C -0.030 4.030 9 O -0.286 6.286 10 C 0.010 3.990 11 H 0.089 0.911 12 C 0.008 3.992 13 N -0.387 5.387 14 C 0.319 3.681 15 O -0.393 6.393 16 C -0.303 4.303 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.200 1.200 26 C -0.039 4.039 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.115 0.885 36 H 0.128 0.872 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.235 0.765 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.125 0.875 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.525 23.568 -20.959 31.735 hybrid contribution -2.423 -1.090 -1.017 2.845 sum -5.947 22.477 -21.976 31.993 Atomic orbital electron populations 1.21760 0.92314 1.02534 1.03384 1.21341 0.98059 0.98056 0.96192 1.21697 1.01210 0.93502 1.03154 1.20783 0.76633 0.81070 0.90553 1.90712 1.53041 1.65510 1.31705 1.48177 1.62994 1.09397 1.14625 1.22560 1.02034 0.93616 0.87210 1.22986 0.94614 0.93680 0.91736 1.88073 1.76760 1.42024 1.21717 1.22748 0.99486 0.91077 0.85736 0.91077 1.21201 0.95832 0.85984 0.96206 1.45823 1.28176 1.21348 1.43399 1.20299 0.85543 0.83981 0.78295 1.90704 1.24002 1.76373 1.48227 1.23520 1.03297 0.97277 1.06210 1.85393 1.32663 1.19515 1.45760 1.22832 1.10868 1.06869 1.27850 0.90978 1.24990 0.95844 0.98073 0.94683 1.70011 1.24688 1.32645 1.22946 0.86224 0.80385 0.80829 0.78050 1.19956 1.20820 1.19961 1.22224 0.97339 0.93707 0.90605 0.91573 0.91071 0.92293 0.89054 0.91597 0.91130 0.92389 0.90063 0.88456 0.87183 0.92478 0.89748 0.90491 0.76492 0.89244 0.89168 0.92145 0.87544 0.89941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.64 9.08 37.16 0.34 -0.30 16 2 C -0.12 -0.64 2.45 -91.77 -0.23 -0.86 16 3 C -0.14 -0.79 8.94 37.16 0.33 -0.46 16 4 C 0.52 4.68 6.70 -10.99 -0.07 4.60 16 5 O -0.53 -6.92 15.63 5.55 0.09 -6.83 16 6 N -0.62 -4.76 3.02 -172.26 -0.52 -5.28 16 7 C 0.07 0.33 6.31 -3.53 -0.02 0.31 16 8 C 0.05 0.26 6.99 37.31 0.26 0.52 16 9 O -0.37 -3.29 10.14 -35.23 -0.36 -3.65 16 10 C 0.07 0.62 2.86 -26.58 -0.08 0.54 16 11 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 12 C 0.13 1.55 5.37 -4.04 -0.02 1.53 16 13 N -0.73 -10.08 5.45 -60.30 -0.33 -10.41 16 14 C 0.53 10.11 7.85 -10.99 -0.09 10.02 16 15 O -0.52 -11.92 15.86 5.56 0.09 -11.83 16 16 C -0.15 -3.12 6.16 36.00 0.22 -2.90 16 17 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 18 C -0.54 -15.38 9.50 30.94 0.29 -15.09 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.33 13.22 55.49 0.73 -25.59 16 22 Si 0.92 21.51 29.55 -169.99 -5.02 16.48 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 26 C 0.08 0.74 5.94 -3.52 -0.02 0.71 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.23 7.95 -51.93 -0.41 -0.18 16 30 H 0.09 0.32 6.27 -51.93 -0.33 -0.01 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.53 7.68 -51.93 -0.40 0.13 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.10 0.24 5.53 -51.93 -0.29 -0.05 16 36 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.40 4.55 8.35 -40.82 -0.34 4.21 16 41 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 42 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.11 1.05 7.07 -51.93 -0.37 0.68 16 45 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 383.22 15.07 5.78 5.78 Total: -1.00 -37.24 383.22 -8.11 -45.34 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -7.17 Total: -0.79 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 0.82 Total: 0.64 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: -0.12 Total: -41.28 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.18 Total: -22.31 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.24 -8.11 -45.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001064865636.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.499 kcal (2) G-P(sol) polarization free energy of solvation -37.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds