Wall clock time and date at job start Tue Mar 31 2020 05:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46821 * 2 1 4 4 C 1.50694 * 109.47195 * 119.99968 * 2 1 3 5 5 O 1.21287 * 120.00076 * 274.76813 * 4 2 1 6 6 N 1.34770 * 120.00198 * 94.76940 * 4 2 1 7 7 C 1.47160 * 120.98159 * 354.66749 * 6 4 2 8 8 C 1.53295 * 108.38551 * 230.54950 * 7 6 4 9 9 O 1.42969 * 109.21975 * 307.69788 * 8 7 6 10 10 C 1.42956 * 114.16855 * 62.58307 * 9 8 7 11 11 H 1.08997 * 109.51358 * 57.38954 * 10 9 8 12 12 C 1.53002 * 109.51211 * 177.49385 * 10 9 8 13 13 N 1.46499 * 109.47307 * 299.89469 * 12 10 9 14 14 C 1.34771 * 120.00176 * 179.97438 * 13 12 10 15 15 O 1.21278 * 120.00039 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99950 * 179.72766 * 14 13 12 17 17 S 1.81002 * 109.47204 * 180.02562 * 16 14 13 18 18 C 1.76205 * 100.00156 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99400 * 359.97438 * 18 17 16 20 20 C 1.38795 * 120.00012 * 179.97438 * 18 17 16 21 21 N 1.31630 * 119.99781 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00020 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47121 * 59.99523 * 22 20 18 24 24 H 1.48499 * 109.47356 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46986 * 299.99854 * 22 20 18 26 26 C 1.47168 * 120.94788 * 174.71518 * 6 4 2 27 27 H 1.08997 * 109.46993 * 299.99574 * 1 2 3 28 28 H 1.08998 * 109.47457 * 60.00036 * 1 2 3 29 29 H 1.09001 * 109.46704 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46993 * 240.00426 * 2 1 3 31 31 H 1.08999 * 109.47484 * 304.96879 * 3 2 1 32 32 H 1.09004 * 109.47352 * 64.96502 * 3 2 1 33 33 H 1.09002 * 109.47152 * 184.96689 * 3 2 1 34 34 H 1.09001 * 109.67938 * 110.82448 * 7 6 4 35 35 H 1.08997 * 109.67755 * 350.27407 * 7 6 4 36 36 H 1.08996 * 109.51392 * 187.77658 * 8 7 6 37 37 H 1.09001 * 109.55224 * 67.64055 * 8 7 6 38 38 H 1.09004 * 109.46894 * 179.89601 * 12 10 9 39 39 H 1.08995 * 109.47133 * 59.89722 * 12 10 9 40 40 H 0.97005 * 119.99874 * 0.02562 * 13 12 10 41 41 H 1.09003 * 109.47445 * 300.00074 * 16 14 13 42 42 H 1.09003 * 109.47306 * 59.99837 * 16 14 13 43 43 H 0.97000 * 119.99516 * 179.97438 * 21 20 18 44 44 H 1.09006 * 109.72708 * 9.75351 * 26 6 4 45 45 H 1.08998 * 109.64874 * 249.19955 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.1522 -0.1043 2.2741 6 7 2.3485 -2.0191 1.1711 7 6 2.1026 -2.8032 -0.0497 8 6 1.3427 -4.0767 0.3385 9 8 2.0464 -4.7426 1.3899 10 6 2.1483 -3.9846 2.5977 11 1 1.1502 -3.7218 2.9479 12 6 2.8617 -4.8172 3.6648 13 7 2.0973 -6.0402 3.9220 14 6 2.5385 -6.9321 4.8309 15 8 3.5681 -6.7220 5.4364 16 6 1.7489 -8.1871 5.0998 17 16 2.5936 -9.1728 6.3612 18 6 1.4853 -10.5378 6.4759 19 1 0.5985 -10.5665 5.8602 20 6 1.7521 -11.5762 7.3575 21 7 2.8327 -11.5409 8.1082 22 14 0.5775 -13.0236 7.4785 23 1 0.4779 -13.6922 6.1563 24 1 1.0855 -13.9906 8.4846 25 1 -0.7644 -12.5390 7.8905 26 6 2.9488 -2.7058 2.3261 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6058 1.9814 -0.8421 32 1 1.7511 1.9301 0.9311 33 1 3.1264 1.4439 -0.0890 34 1 3.0529 -3.0694 -0.5126 35 1 1.5049 -2.2175 -0.7480 36 1 1.2715 -4.7361 -0.5265 37 1 0.3414 -3.8143 0.6799 38 1 2.9407 -4.2379 4.5848 39 1 3.8597 -5.0795 3.3139 40 1 1.2739 -6.2083 3.4375 41 1 0.7529 -7.9210 5.4540 42 1 1.6647 -8.7674 4.1809 43 1 3.0189 -12.2663 8.7245 44 1 2.9110 -2.0563 3.2007 45 1 3.9846 -2.9615 2.1027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001064865636.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:42 Heat of formation + Delta-G solvation = -148.776908 kcal Electronic energy + Delta-G solvation = -25673.244458 eV Core-core repulsion = 21815.832092 eV Total energy + Delta-G solvation = -3857.412366 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.67143 -40.64066 -39.58493 -36.31556 -35.66436 -35.43605 -34.57669 -33.05589 -30.94155 -29.34146 -28.13906 -27.72862 -27.09117 -24.48673 -23.88416 -22.29802 -21.68268 -19.87897 -19.80151 -18.68187 -17.94168 -17.84390 -17.46965 -16.87212 -16.81270 -16.54606 -16.42950 -16.08625 -15.81214 -15.58893 -15.07739 -15.02463 -14.58596 -14.54817 -14.32815 -14.27758 -13.71369 -13.50411 -13.28399 -13.16273 -13.15912 -12.95204 -12.85865 -12.83596 -12.61318 -12.35067 -12.11539 -11.94892 -11.79211 -11.72673 -11.25486 -11.12112 -11.02853 -10.75130 -10.27546 -10.17016 -9.69630 -8.66184 -8.33620 -6.12007 1.26188 1.44747 1.45594 1.49272 1.56226 1.60209 1.73983 2.26415 2.30175 2.55415 3.00323 3.31887 3.37593 3.61150 3.70111 3.82300 3.89100 3.94879 4.00495 4.05901 4.15747 4.27127 4.29133 4.33259 4.45892 4.51428 4.56463 4.60643 4.72440 4.73793 4.81440 4.83309 4.87190 4.92672 5.00651 5.20865 5.27762 5.31820 5.36563 5.42409 6.04843 6.20496 6.23789 6.47096 7.03041 7.07337 7.21651 8.75365 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.033205 B = 0.001882 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.034235 B =14875.551968 C =15246.031855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 C -0.138 4.138 4 C 0.513 3.487 5 O -0.585 6.585 6 N -0.616 5.616 7 C 0.067 3.933 8 C 0.042 3.958 9 O -0.385 6.385 10 C 0.086 3.914 11 H 0.076 0.924 12 C 0.131 3.869 13 N -0.707 5.707 14 C 0.534 3.466 15 O -0.566 6.566 16 C -0.128 4.128 17 S -0.151 6.151 18 C -0.547 4.547 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.261 1.261 24 H -0.279 1.279 25 H -0.262 1.262 26 C 0.084 3.916 27 H 0.044 0.956 28 H 0.093 0.907 29 H 0.068 0.932 30 H 0.122 0.878 31 H 0.090 0.910 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.089 0.911 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.417 0.583 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.271 0.729 44 H 0.089 0.911 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.909 23.003 -25.878 35.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.131 4.131 3 C -0.196 4.196 4 C 0.304 3.696 5 O -0.464 6.464 6 N -0.349 5.349 7 C -0.055 4.055 8 C -0.035 4.035 9 O -0.304 6.304 10 C 0.027 3.973 11 H 0.094 0.906 12 C 0.006 3.994 13 N -0.361 5.361 14 C 0.320 3.680 15 O -0.444 6.444 16 C -0.280 4.280 17 S 0.076 5.924 18 C -0.695 4.695 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.186 1.186 24 H -0.204 1.204 25 H -0.187 1.187 26 C -0.039 4.039 27 H 0.063 0.937 28 H 0.112 0.888 29 H 0.087 0.913 30 H 0.140 0.860 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.145 0.855 36 H 0.152 0.848 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.254 0.746 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.108 0.892 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.954 23.436 -24.251 34.246 hybrid contribution -1.677 -0.935 -0.137 1.925 sum -7.631 22.501 -24.388 34.049 Atomic orbital electron populations 1.21776 0.91276 1.03240 1.03458 1.21427 0.98763 0.97551 0.95338 1.21708 1.01076 0.93948 1.02860 1.21520 0.75829 0.81254 0.91030 1.90689 1.55270 1.66661 1.33804 1.48302 1.62112 1.09354 1.15132 1.22812 1.02998 0.93377 0.86315 1.23272 0.94552 0.94267 0.91409 1.88042 1.77482 1.42742 1.22119 1.22433 0.99144 0.90273 0.85427 0.90572 1.21304 0.95630 0.85150 0.97272 1.45554 1.28366 1.20715 1.41428 1.20062 0.84803 0.84225 0.78873 1.90694 1.26000 1.77356 1.50392 1.23356 1.03246 0.97018 1.04331 1.85582 1.35505 1.21751 1.49595 1.23181 1.11057 1.07059 1.28223 0.89841 1.26144 0.97695 1.01380 0.93990 1.70183 1.26914 1.33829 1.23841 0.84993 0.77898 0.76490 0.78539 1.18605 1.20416 1.18657 1.22090 0.97615 0.93356 0.90884 0.93713 0.88785 0.91280 0.86030 0.89151 0.93621 0.92917 0.89311 0.85454 0.84818 0.91802 0.90077 0.91331 0.74643 0.87158 0.87184 0.92001 0.89244 0.89777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.08 71.98 0.65 -0.25 16 2 C -0.11 -0.97 2.45 -11.54 -0.03 -1.00 16 3 C -0.14 -1.42 8.94 71.98 0.64 -0.78 16 4 C 0.51 8.79 6.70 87.66 0.59 9.38 16 5 O -0.58 -15.70 15.63 -3.05 -0.05 -15.74 16 6 N -0.62 -8.52 3.02 -817.30 -2.47 -10.99 16 7 C 0.07 0.41 6.31 86.35 0.55 0.96 16 8 C 0.04 0.31 6.99 72.08 0.50 0.82 16 9 O -0.38 -5.96 10.14 -148.98 -1.51 -7.47 16 10 C 0.09 1.45 2.86 30.69 0.09 1.53 16 11 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 12 C 0.13 3.01 5.37 86.38 0.46 3.47 16 13 N -0.71 -18.56 5.45 -463.07 -2.52 -21.08 16 14 C 0.53 20.14 7.85 87.66 0.69 20.82 16 15 O -0.57 -26.69 15.86 -3.02 -0.05 -26.74 16 16 C -0.13 -5.15 6.16 71.24 0.44 -4.71 16 17 S -0.15 -8.51 20.57 -56.49 -1.16 -9.67 16 18 C -0.55 -31.46 9.50 67.95 0.65 -30.81 16 19 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 20 C 0.01 0.72 5.49 84.86 0.47 1.19 16 21 N -0.91 -56.38 13.22 21.65 0.29 -56.09 16 22 Si 1.00 43.70 29.55 68.60 2.03 45.73 16 23 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 25 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 26 C 0.08 1.44 5.94 86.35 0.51 1.95 16 27 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.07 0.31 7.95 -2.39 -0.02 0.29 16 30 H 0.12 0.34 6.27 -2.39 -0.01 0.32 16 31 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.04 0.70 7.68 -2.39 -0.02 0.68 16 33 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.13 0.03 5.53 -2.39 -0.01 0.01 16 36 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 39 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.42 8.45 8.35 -92.70 -0.77 7.67 16 41 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 42 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 43 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 44 H 0.09 1.85 7.07 -2.38 -0.02 1.83 16 45 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -84.81 383.22 0.98 -83.83 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.22 Total: 15.65 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 6.21 Total: 2.58 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -4.71 Total: -88.17 kcal Atomic # 8 Polarization: -48.34 SS G_CDS: -1.61 Total: -49.95 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.67 kcal Total: -84.81 0.98 -83.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001064865636.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.943 kcal (2) G-P(sol) polarization free energy of solvation -84.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds