Wall clock time and date at job start Tue Mar 31 2020 05:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47429 * 2 1 4 4 C 1.50701 * 109.47202 * 180.02562 * 3 2 1 5 5 O 1.21279 * 120.00119 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99921 * 180.02562 * 4 3 2 7 7 C 1.46500 * 119.99926 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.47028 * 180.02562 * 7 6 4 9 9 H 1.08999 * 109.51282 * 305.10404 * 8 7 6 10 10 C 1.53297 * 109.51189 * 185.00135 * 8 7 6 11 11 N 1.47148 * 108.38428 * 187.77116 * 10 8 7 12 12 C 1.34782 * 120.98531 * 230.51286 * 11 10 8 13 13 O 1.21277 * 119.99608 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00013 * 180.02562 * 12 11 10 15 15 S 1.81001 * 109.47070 * 180.02562 * 14 12 11 16 16 C 1.76199 * 100.00249 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99582 * 0.02562 * 16 15 14 18 18 C 1.38796 * 120.00176 * 179.97438 * 16 15 14 19 19 N 1.31626 * 120.00148 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99841 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47119 * 89.99850 * 20 18 16 22 22 H 1.48500 * 109.46958 * 209.99985 * 20 18 16 23 23 H 1.48494 * 109.47115 * 329.99763 * 20 18 16 24 24 C 1.47156 * 118.03566 * 50.53861 * 11 10 8 25 25 C 1.53298 * 108.38111 * 309.46168 * 24 11 10 26 26 O 1.42955 * 109.22369 * 52.30392 * 25 24 11 27 27 H 1.09002 * 109.47125 * 59.99664 * 1 2 3 28 28 H 1.08996 * 109.47471 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46987 * 299.99669 * 1 2 3 30 30 H 1.08998 * 109.46987 * 240.00331 * 2 1 3 31 31 H 1.09002 * 109.47125 * 120.00336 * 2 1 3 32 32 H 1.09008 * 109.46778 * 60.00189 * 3 2 1 33 33 H 1.08999 * 109.47497 * 300.00720 * 3 2 1 34 34 H 0.97003 * 119.99991 * 0.02562 * 6 4 3 35 35 H 1.08998 * 109.47004 * 60.00235 * 7 6 4 36 36 H 1.09002 * 109.47330 * 300.00104 * 7 6 4 37 37 H 1.09005 * 109.67798 * 68.05301 * 10 8 7 38 38 H 1.08994 * 109.71127 * 307.51373 * 10 8 7 39 39 H 1.09000 * 109.46834 * 299.99668 * 14 12 11 40 40 H 1.08993 * 109.47165 * 59.99791 * 14 12 11 41 41 H 0.96995 * 120.00573 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.68077 * 69.18605 * 24 11 10 43 43 H 1.08998 * 109.68021 * 189.74333 * 24 11 10 44 44 H 1.09001 * 109.50808 * 172.22325 * 25 24 11 45 45 H 1.08995 * 109.51365 * 292.37497 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 8 4.1534 0.3921 -0.0015 6 7 4.2210 2.6096 -0.0002 7 6 5.6860 2.6095 -0.0003 8 6 6.1960 4.0520 0.0009 9 1 5.7603 4.5929 -0.8392 10 6 7.7238 4.0550 -0.1251 11 7 8.2025 5.4332 0.0662 12 6 9.0479 6.0028 -0.8155 13 8 9.4248 5.3783 -1.7844 14 6 9.5247 7.4157 -0.5975 15 16 10.6392 7.8906 -1.9422 16 6 11.0316 9.5357 -1.4479 17 1 10.6041 9.9445 -0.5443 18 6 11.8909 10.3058 -2.2192 19 7 12.1844 11.5346 -1.8497 20 14 12.6309 9.5984 -3.7818 21 1 11.7365 9.8923 -4.9302 22 1 13.9617 10.2123 -4.0212 23 1 12.7828 8.1285 -3.6362 24 6 7.7315 6.1711 1.2491 25 6 6.2033 6.0650 1.3081 26 8 5.8235 4.6893 1.2252 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.6767 1.9564 -0.8899 34 1 3.7360 3.4497 0.0009 35 1 6.0492 2.0960 -0.8905 36 1 6.0493 2.0953 0.8895 37 1 8.0111 3.7007 -1.1151 38 1 8.1567 3.4069 0.6367 39 1 8.6682 8.0896 -0.5808 40 1 10.0544 7.4777 0.3530 41 1 12.7852 12.0727 -2.3885 42 1 8.1648 5.7360 2.1497 43 1 8.0239 7.2180 1.1691 44 1 5.8453 6.4855 2.2479 45 1 5.7677 6.6140 0.4733 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001064880615.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:22 Heat of formation + Delta-G solvation = -126.852295 kcal Electronic energy + Delta-G solvation = -25469.590519 eV Core-core repulsion = 21613.128876 eV Total energy + Delta-G solvation = -3856.461643 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.59229 -39.89394 -38.41483 -35.53934 -34.78105 -34.63496 -32.49599 -32.37438 -29.81130 -29.13696 -27.87609 -25.81147 -25.44431 -23.68483 -22.25563 -21.78131 -20.55873 -19.46281 -17.89210 -17.50187 -17.14045 -16.94861 -16.59165 -16.17719 -15.69064 -15.67305 -15.15327 -15.01062 -14.92872 -14.63312 -14.17591 -13.87799 -13.75336 -13.51544 -13.34114 -13.19316 -12.86299 -12.70066 -12.33416 -12.20510 -12.15687 -11.99154 -11.66338 -11.58457 -11.31453 -11.14591 -11.05704 -11.05417 -10.67353 -10.47060 -10.17281 -9.91349 -9.62275 -9.43073 -9.05885 -8.70795 -8.56766 -6.99330 -6.34363 -4.07110 2.33913 2.47446 2.74575 2.84966 3.06745 3.22845 3.28786 3.46152 3.50835 4.27301 4.30797 4.33932 4.43873 4.48426 4.54353 4.58607 4.64494 4.69392 4.85025 4.95448 5.01263 5.04242 5.05091 5.07232 5.19585 5.20354 5.25094 5.32350 5.42380 5.47335 5.52314 5.62019 5.64431 5.67352 5.74654 5.87332 5.90603 6.04384 6.27120 6.69532 7.13795 7.25051 7.88397 7.89865 8.26265 8.35299 9.11662 10.74730 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.029548 B = 0.001956 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.387944 B =14313.009478 C =14660.409116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.141 4.141 4 C 0.511 3.489 5 O -0.542 6.542 6 N -0.726 5.726 7 C 0.130 3.870 8 C 0.067 3.933 9 H 0.072 0.928 10 C 0.089 3.911 11 N -0.622 5.622 12 C 0.536 3.464 13 O -0.514 6.514 14 C -0.122 4.122 15 S -0.141 6.141 16 C -0.523 4.523 17 H 0.088 0.912 18 C 0.097 3.903 19 N -0.879 5.879 20 Si 0.856 3.144 21 H -0.267 1.267 22 H -0.273 1.273 23 H -0.235 1.235 24 C 0.071 3.929 25 C 0.049 3.951 26 O -0.375 6.375 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.404 0.596 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.271 0.729 42 H 0.079 0.921 43 H 0.101 0.899 44 H 0.109 0.891 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.911 -16.540 7.870 28.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.181 4.181 4 C 0.298 3.702 5 O -0.419 6.419 6 N -0.379 5.379 7 C 0.006 3.994 8 C 0.008 3.992 9 H 0.090 0.910 10 C -0.035 4.035 11 N -0.360 5.360 12 C 0.324 3.676 13 O -0.388 6.388 14 C -0.272 4.272 15 S 0.086 5.914 16 C -0.670 4.670 17 H 0.106 0.894 18 C -0.112 4.112 19 N -0.515 5.515 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.052 4.052 25 C -0.029 4.029 26 O -0.294 6.294 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.238 0.762 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.123 0.877 38 H 0.096 0.904 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.120 0.880 44 H 0.127 0.873 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.873 -18.140 6.530 28.414 hybrid contribution -0.046 1.530 0.413 1.585 sum -20.919 -16.610 6.943 27.599 Atomic orbital electron populations 1.21796 0.95436 1.02029 1.01809 1.21283 0.95292 0.94616 1.03610 1.21724 0.91509 1.00335 1.04486 1.20796 0.90452 0.83385 0.75584 1.90717 1.70576 1.31305 1.49293 1.45918 1.07025 1.09052 1.75862 1.21293 0.80295 0.94162 1.03664 1.22719 0.94810 0.93635 0.88080 0.90995 1.22070 0.92726 0.83970 1.04744 1.48092 1.48204 1.14290 1.25367 1.20359 0.77400 0.88299 0.81572 1.90702 1.55413 1.64033 1.28666 1.23304 1.03819 0.94595 1.05522 1.84833 1.57006 1.18237 1.31361 1.22291 1.34211 0.96272 1.14268 0.89368 1.24701 0.94790 0.94065 0.97650 1.69928 1.34686 1.07994 1.38911 0.86743 0.79488 0.82143 0.83535 1.19187 1.19858 1.15937 1.22469 0.95245 0.98848 0.88655 1.23019 0.93819 0.82747 1.03286 1.87968 1.79833 1.24206 1.37356 0.92658 0.92371 0.92657 0.91218 0.91227 0.88813 0.88868 0.76167 0.89499 0.90210 0.87678 0.90427 0.88507 0.88350 0.91878 0.90298 0.88039 0.87263 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.11 -0.72 5.22 -26.73 -0.14 -0.86 16 3 C -0.14 -0.80 5.70 -27.88 -0.16 -0.96 16 4 C 0.51 4.63 7.83 -10.99 -0.09 4.54 16 5 O -0.54 -7.15 15.98 5.56 0.09 -7.06 16 6 N -0.73 -5.51 5.51 -60.29 -0.33 -5.85 16 7 C 0.13 1.11 5.34 -4.04 -0.02 1.09 16 8 C 0.07 0.58 2.81 -26.58 -0.07 0.51 16 9 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 10 C 0.09 0.97 5.93 -3.53 -0.02 0.95 16 11 N -0.62 -7.95 3.02 -172.27 -0.52 -8.47 16 12 C 0.54 9.27 7.73 -10.98 -0.08 9.18 16 13 O -0.51 -10.76 15.33 5.56 0.09 -10.68 16 14 C -0.12 -2.27 4.53 36.00 0.16 -2.10 16 15 S -0.14 -3.49 18.55 -107.50 -1.99 -5.48 16 16 C -0.52 -14.72 10.04 30.94 0.31 -14.41 16 17 H 0.09 2.58 8.03 -52.49 -0.42 2.15 16 18 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 19 N -0.88 -26.05 13.97 55.49 0.78 -25.27 16 20 Si 0.86 21.44 27.74 -169.99 -4.72 16.73 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 24 C 0.07 0.68 6.54 -3.53 -0.02 0.65 16 25 C 0.05 0.37 6.98 37.31 0.26 0.64 16 26 O -0.37 -3.31 10.33 -35.23 -0.36 -3.68 16 27 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.54 8.10 -51.93 -0.42 0.11 16 31 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 32 H 0.09 0.38 8.14 -51.92 -0.42 -0.04 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.40 2.22 8.47 -40.82 -0.35 1.87 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.10 1.28 7.08 -51.93 -0.37 0.91 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.10 1.64 7.66 -51.91 -0.40 1.25 16 40 H 0.10 1.71 8.01 -51.92 -0.42 1.29 16 41 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.10 0.94 6.05 -51.93 -0.31 0.62 16 44 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 382.97 15.07 5.77 5.77 Total: -1.00 -35.66 382.97 -8.14 -43.80 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -7.33 Total: -1.37 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 0.40 Total: 1.56 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: -0.08 Total: -39.59 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.19 Total: -21.41 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.72 Total: 16.73 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.99 Total: -5.48 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.66 -8.14 -43.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001064880615.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.054 kcal (2) G-P(sol) polarization free energy of solvation -35.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds