Wall clock time and date at job start Tue Mar 31 2020 05:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50703 * 109.47126 * 179.97438 * 3 2 1 5 5 O 1.21279 * 119.99926 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99773 * 179.97438 * 4 3 2 7 7 C 1.46504 * 119.99531 * 180.02562 * 6 4 3 8 8 C 1.53006 * 109.46883 * 180.02562 * 7 6 4 9 9 H 1.09002 * 109.51241 * 59.99193 * 8 7 6 10 10 C 1.53287 * 109.51249 * 180.09883 * 8 7 6 11 11 N 1.47153 * 108.38767 * 172.22329 * 10 8 7 12 12 C 1.34774 * 120.98481 * 129.48320 * 11 10 8 13 13 O 1.21282 * 119.99835 * 0.02562 * 12 11 10 14 14 C 1.50696 * 119.99911 * 180.02562 * 12 11 10 15 15 S 1.81007 * 109.46854 * 180.02562 * 14 12 11 16 16 C 1.76206 * 99.99824 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99758 * 0.02562 * 16 15 14 18 18 C 1.38799 * 119.99835 * 179.97438 * 16 15 14 19 19 N 1.31625 * 120.00047 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99982 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47378 * 90.00562 * 20 18 16 22 22 H 1.48502 * 109.47397 * 210.00401 * 20 18 16 23 23 H 1.48506 * 109.47081 * 330.00369 * 20 18 16 24 24 C 1.47156 * 118.03468 * 309.47054 * 11 10 8 25 25 C 1.53300 * 108.38501 * 50.52775 * 24 11 10 26 26 O 1.42951 * 109.26561 * 307.72383 * 25 24 11 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 31 31 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 32 32 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 33 33 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 34 34 H 0.96998 * 120.00166 * 0.02562 * 6 4 3 35 35 H 1.08998 * 109.47135 * 299.99449 * 7 6 4 36 36 H 1.08993 * 109.47378 * 60.00531 * 7 6 4 37 37 H 1.08998 * 109.68386 * 291.94466 * 10 8 7 38 38 H 1.09006 * 109.68426 * 52.46526 * 10 8 7 39 39 H 1.08998 * 109.47509 * 299.99725 * 14 12 11 40 40 H 1.08996 * 109.47577 * 60.00625 * 14 12 11 41 41 H 0.97005 * 120.00243 * 179.97438 * 19 18 16 42 42 H 1.08992 * 109.68038 * 170.25639 * 24 11 10 43 43 H 1.09002 * 109.67972 * 290.76888 * 24 11 10 44 44 H 1.08998 * 109.51001 * 67.62813 * 25 24 11 45 45 H 1.09000 * 109.50963 * 187.72532 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 0.0006 5 8 4.1534 0.3922 0.0006 6 7 4.2209 2.6098 0.0002 7 6 5.6859 2.6097 0.0003 8 6 6.1959 4.0523 0.0004 9 1 5.8328 4.5667 0.8901 10 6 7.7288 4.0534 -0.0020 11 7 8.1917 5.4374 -0.1908 12 6 9.1086 5.9809 0.6339 13 8 9.5653 5.3273 1.5478 14 6 9.5665 7.4007 0.4204 15 16 10.7917 7.8352 1.6800 16 6 11.1433 9.4952 1.2048 17 1 10.6408 9.9313 0.3541 18 6 12.0653 10.2425 1.9245 19 7 12.6774 9.7111 2.9615 20 14 12.4387 12.0020 1.4204 21 1 11.5132 12.9257 2.1245 22 1 13.8400 12.3341 1.7827 23 1 12.2596 12.1451 -0.0469 24 6 7.6240 6.2104 -1.3069 25 6 6.0961 6.1041 -1.2409 26 8 5.7218 4.7264 -1.1678 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.7359 3.4498 -0.0001 35 1 6.0492 2.0963 0.8905 36 1 6.0493 2.0956 -0.8895 37 1 8.0977 3.6695 0.9491 38 1 8.0951 3.4289 -0.8169 39 1 10.0146 7.4931 -0.5689 40 1 8.7123 8.0733 0.4968 41 1 13.3220 10.2332 3.4643 42 1 7.9235 7.2547 -1.2199 43 1 7.9802 5.8040 -2.2536 44 1 5.7328 6.6269 -0.3562 45 1 5.6610 6.5535 -2.1336 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001064880617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:26 Heat of formation + Delta-G solvation = -127.099741 kcal Electronic energy + Delta-G solvation = -25426.274798 eV Core-core repulsion = 21569.802425 eV Total energy + Delta-G solvation = -3856.472373 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.52888 -39.84202 -38.32362 -35.48894 -34.72242 -34.58546 -32.48405 -32.32371 -29.67613 -29.09698 -27.83050 -25.74997 -25.29690 -23.63583 -22.22586 -21.70554 -20.52199 -19.37049 -17.87101 -17.45992 -17.10150 -16.85026 -16.54173 -16.13799 -15.62960 -15.59009 -15.10704 -14.87689 -14.85151 -14.59411 -14.18749 -13.91614 -13.66426 -13.48207 -13.25169 -13.14110 -12.77085 -12.52709 -12.29383 -12.14807 -12.07020 -11.90641 -11.61459 -11.56349 -11.12671 -11.10922 -11.07725 -11.01009 -10.80853 -10.41458 -10.14145 -9.86843 -9.50496 -9.38956 -9.11910 -8.62565 -8.30126 -6.57056 -6.26878 -3.98460 2.37055 2.60536 2.87629 2.96013 3.18335 3.20141 3.25879 3.27079 3.48204 4.14554 4.34815 4.40100 4.47254 4.55453 4.60735 4.62969 4.71924 4.83321 4.89280 5.03073 5.08146 5.08680 5.09618 5.21643 5.22822 5.28480 5.34343 5.41414 5.47391 5.53371 5.62690 5.66111 5.71641 5.76555 5.77212 5.92672 6.00691 6.07835 6.36420 6.73011 7.17953 7.35752 7.54016 7.93344 8.29464 8.39630 9.18342 10.80499 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.033004 B = 0.001875 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.180060 B =14928.336472 C =15221.265703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.140 4.140 4 C 0.511 3.489 5 O -0.542 6.542 6 N -0.725 5.725 7 C 0.130 3.870 8 C 0.067 3.933 9 H 0.072 0.928 10 C 0.089 3.911 11 N -0.624 5.624 12 C 0.537 3.463 13 O -0.512 6.512 14 C -0.151 4.151 15 S -0.059 6.059 16 C -0.537 4.537 17 H 0.073 0.927 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.073 3.927 25 C 0.049 3.951 26 O -0.376 6.376 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.404 0.596 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.269 0.731 42 H 0.100 0.900 43 H 0.077 0.923 44 H 0.058 0.942 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.054 -11.935 -9.880 27.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.180 4.180 4 C 0.297 3.703 5 O -0.419 6.419 6 N -0.377 5.377 7 C 0.006 3.994 8 C 0.008 3.992 9 H 0.090 0.910 10 C -0.035 4.035 11 N -0.362 5.362 12 C 0.325 3.675 13 O -0.386 6.386 14 C -0.301 4.301 15 S 0.167 5.833 16 C -0.685 4.685 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.051 4.051 25 C -0.029 4.029 26 O -0.294 6.294 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.239 0.761 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.123 0.877 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.119 0.881 43 H 0.095 0.905 44 H 0.077 0.923 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -21.870 -13.727 -8.500 27.184 hybrid contribution -0.284 2.649 -1.291 2.961 sum -22.155 -11.077 -9.791 26.635 Atomic orbital electron populations 1.21798 0.95455 1.02014 1.01795 1.21283 0.95269 0.94634 1.03613 1.21721 0.91547 1.00309 1.04462 1.20793 0.90442 0.83404 0.75623 1.90717 1.70573 1.31311 1.49337 1.45892 1.07032 1.09045 1.75775 1.21308 0.80312 0.94135 1.03631 1.22730 0.94137 0.93128 0.89253 0.90998 1.22055 0.92774 0.84024 1.04677 1.48127 1.43400 1.13423 1.31201 1.20394 0.77642 0.88712 0.80744 1.90706 1.54567 1.62689 1.30591 1.23551 1.05124 0.94414 1.07040 1.85443 1.47158 1.15533 1.35130 1.22849 1.29244 0.98179 1.18249 0.90908 1.24992 0.94917 0.99077 0.94535 1.70012 1.25686 1.37081 1.17392 0.86161 0.77822 0.82595 0.78879 1.20252 1.20703 1.19681 1.22426 0.94108 0.98275 0.90275 1.23009 0.94080 0.82693 1.03068 1.87946 1.75668 1.23219 1.42604 0.92381 0.92670 0.92662 0.91215 0.91232 0.88834 0.88887 0.76113 0.89510 0.90304 0.87657 0.90546 0.89120 0.89231 0.92115 0.88149 0.90482 0.92324 0.87383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.38 16 2 C -0.11 -0.74 5.22 -26.73 -0.14 -0.88 16 3 C -0.14 -0.83 5.70 -27.88 -0.16 -0.99 16 4 C 0.51 4.77 7.83 -10.98 -0.09 4.68 16 5 O -0.54 -7.31 15.98 5.56 0.09 -7.22 16 6 N -0.73 -5.75 5.45 -60.29 -0.33 -6.08 16 7 C 0.13 1.17 5.37 -4.04 -0.02 1.14 16 8 C 0.07 0.61 2.86 -26.58 -0.08 0.54 16 9 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 10 C 0.09 1.02 5.93 -3.54 -0.02 1.00 16 11 N -0.62 -8.42 3.02 -172.28 -0.52 -8.94 16 12 C 0.54 9.82 7.73 -10.99 -0.08 9.74 16 13 O -0.51 -11.36 15.33 5.56 0.09 -11.27 16 14 C -0.15 -2.94 4.53 36.00 0.16 -2.78 16 15 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 16 C -0.54 -14.96 9.50 30.94 0.29 -14.67 16 17 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -25.76 13.22 55.49 0.73 -25.03 16 20 Si 0.92 20.98 29.55 -169.99 -5.02 15.96 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 C 0.07 0.72 6.54 -3.53 -0.02 0.70 16 25 C 0.05 0.39 6.98 37.31 0.26 0.65 16 26 O -0.38 -3.43 10.14 -35.23 -0.36 -3.78 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 31 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.40 2.37 8.35 -40.82 -0.34 2.03 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.11 1.36 7.08 -51.93 -0.37 0.99 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.09 1.64 8.01 -51.92 -0.42 1.22 16 40 H 0.09 1.58 7.66 -51.92 -0.40 1.18 16 41 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.10 0.97 6.05 -51.93 -0.31 0.66 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 385.36 15.07 5.81 5.81 Total: -1.00 -36.04 385.36 -8.64 -44.68 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -7.30 Total: -1.10 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 0.38 Total: 0.76 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: -0.12 Total: -40.04 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.18 Total: -22.27 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.04 -8.64 -44.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001064880617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.421 kcal (2) G-P(sol) polarization free energy of solvation -36.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds