Wall clock time and date at job start Tue Mar 31 2020 05:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46974 * 2 1 4 4 C 1.50701 * 109.46993 * 120.00592 * 2 1 3 5 5 O 1.21277 * 120.00133 * 359.97438 * 4 2 1 6 6 N 1.34770 * 119.99772 * 180.02562 * 4 2 1 7 7 C 1.46497 * 120.00398 * 179.97438 * 6 4 2 8 8 C 1.52996 * 109.47727 * 179.97438 * 7 6 4 9 9 H 1.09000 * 109.51263 * 304.90294 * 8 7 6 10 10 C 1.53296 * 109.51441 * 184.74690 * 8 7 6 11 11 N 1.47148 * 108.38391 * 187.77630 * 10 8 7 12 12 C 1.34780 * 120.98274 * 230.50991 * 11 10 8 13 13 O 1.21281 * 119.99474 * 0.02562 * 12 11 10 14 14 C 1.50692 * 120.00197 * 179.97438 * 12 11 10 15 15 S 1.80999 * 109.47280 * 180.02562 * 14 12 11 16 16 C 1.76205 * 100.00141 * 180.02562 * 15 14 12 17 17 H 1.07995 * 119.99966 * 359.97438 * 16 15 14 18 18 C 1.38793 * 119.99936 * 179.97438 * 16 15 14 19 19 N 1.31634 * 120.00010 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00077 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46911 * 89.99851 * 20 18 16 22 22 H 1.48502 * 109.47060 * 209.99854 * 20 18 16 23 23 H 1.48501 * 109.46912 * 329.99863 * 20 18 16 24 24 C 1.47158 * 118.03877 * 50.53603 * 11 10 8 25 25 C 1.53302 * 108.38179 * 309.46351 * 24 11 10 26 26 O 1.42962 * 109.21989 * 52.30242 * 25 24 11 27 27 H 1.08998 * 109.46874 * 299.99956 * 1 2 3 28 28 H 1.08998 * 109.47247 * 59.99693 * 1 2 3 29 29 H 1.08996 * 109.46916 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46714 * 240.00366 * 2 1 3 31 31 H 1.09002 * 109.46617 * 60.00575 * 3 2 1 32 32 H 1.09001 * 109.46538 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47384 * 300.00222 * 3 2 1 34 34 H 0.97007 * 120.00272 * 359.97438 * 6 4 2 35 35 H 1.09007 * 109.47143 * 59.99200 * 7 6 4 36 36 H 1.09007 * 109.46995 * 300.00449 * 7 6 4 37 37 H 1.09007 * 109.67766 * 307.49540 * 10 8 7 38 38 H 1.08991 * 109.68283 * 68.01274 * 10 8 7 39 39 H 1.09000 * 109.47722 * 300.00562 * 14 12 11 40 40 H 1.08997 * 109.47431 * 60.00303 * 14 12 11 41 41 H 0.97002 * 119.99836 * 180.02562 * 19 18 16 42 42 H 1.08995 * 109.68247 * 69.18541 * 24 11 10 43 43 H 1.09001 * 109.68235 * 189.70242 * 24 11 10 44 44 H 1.09000 * 109.51359 * 292.38110 * 25 24 11 45 45 H 1.08996 * 109.50864 * 172.22238 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 1.2443 -1.1711 2.0289 6 7 3.3574 -0.8332 1.4439 7 6 3.8458 -1.5234 2.6402 8 6 5.3758 -1.5236 2.6402 9 1 5.7398 -1.9597 1.7099 10 6 5.8878 -2.3467 3.8277 11 7 7.3470 -2.1775 3.9150 12 6 8.1651 -3.2448 4.0050 13 8 7.7011 -4.3653 4.0146 14 6 9.6562 -3.0459 4.0927 15 16 10.4745 -4.6567 4.2014 16 6 12.1567 -4.1400 4.2908 17 1 12.4004 -3.0882 4.2691 18 6 13.1686 -5.0849 4.3891 19 7 12.8715 -6.3670 4.4160 20 14 14.9520 -4.5372 4.4831 21 1 15.3356 -4.3422 5.9044 22 1 15.8215 -5.5755 3.8738 23 1 15.1167 -3.2587 3.7459 24 6 7.8865 -0.8085 3.9016 25 6 7.2771 -0.0602 2.7104 26 8 5.8534 -0.1811 2.7572 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.6767 1.9562 0.8901 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 3.9878 -0.4645 0.8054 35 1 3.4827 -2.5513 2.6405 36 1 3.4822 -1.0096 3.5301 37 1 5.4216 -1.9934 4.7475 38 1 5.6482 -3.3990 3.6755 39 1 10.0057 -2.5205 3.2039 40 1 9.8928 -2.4573 4.9791 41 1 13.5787 -7.0274 4.4850 42 1 7.6216 -0.3004 4.8288 43 1 8.9712 -0.8423 3.7986 44 1 7.6487 -0.4914 1.7809 45 1 7.5550 0.9925 2.7611 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001064881061.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:30 Heat of formation + Delta-G solvation = -124.441918 kcal Electronic energy + Delta-G solvation = -25754.628711 eV Core-core repulsion = 21898.271590 eV Total energy + Delta-G solvation = -3856.357121 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.56640 -39.96353 -38.32678 -35.42463 -34.83591 -34.64275 -32.48307 -32.20805 -29.62759 -28.56708 -27.48040 -26.04205 -25.44245 -23.92420 -23.02470 -21.74041 -20.16886 -19.36438 -17.86841 -17.52627 -17.13988 -16.84977 -16.55983 -15.76088 -15.60590 -15.55569 -15.10269 -14.88438 -14.85140 -14.38338 -14.17045 -13.90642 -13.64336 -13.39148 -13.21995 -12.81995 -12.73930 -12.68995 -12.52164 -12.29542 -12.08462 -11.91330 -11.62862 -11.55153 -11.46925 -11.11040 -11.07667 -11.00146 -10.80893 -10.41395 -10.04858 -9.86877 -9.50345 -9.39115 -9.11913 -8.62229 -8.30129 -6.57043 -6.26910 -3.98476 2.36434 2.61184 2.87382 2.95478 3.18469 3.19779 3.25755 3.27228 3.48196 4.14492 4.26727 4.39908 4.44610 4.52182 4.55894 4.62445 4.72341 4.83252 4.89334 4.97024 5.08159 5.09034 5.19490 5.21987 5.28461 5.30442 5.41220 5.42945 5.46015 5.52353 5.56195 5.63027 5.71608 5.72982 5.77238 5.87360 6.00733 6.07857 6.36563 6.73604 7.17164 7.35881 7.54037 7.92876 8.29481 8.39744 9.18308 10.80451 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.031077 B = 0.002010 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.783703 B =13924.351982 C =14310.336130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 C -0.144 4.144 4 C 0.516 3.484 5 O -0.541 6.541 6 N -0.724 5.724 7 C 0.130 3.870 8 C 0.067 3.933 9 H 0.072 0.928 10 C 0.089 3.911 11 N -0.624 5.624 12 C 0.537 3.463 13 O -0.512 6.512 14 C -0.151 4.151 15 S -0.059 6.059 16 C -0.537 4.537 17 H 0.073 0.927 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.073 3.927 25 C 0.049 3.951 26 O -0.375 6.375 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.403 0.597 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.269 0.731 42 H 0.077 0.923 43 H 0.100 0.900 44 H 0.058 0.942 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.360 18.112 -8.869 27.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.137 4.137 3 C -0.202 4.202 4 C 0.302 3.698 5 O -0.417 6.417 6 N -0.376 5.376 7 C 0.006 3.994 8 C 0.008 3.992 9 H 0.090 0.910 10 C -0.035 4.035 11 N -0.361 5.361 12 C 0.325 3.675 13 O -0.385 6.385 14 C -0.301 4.301 15 S 0.167 5.833 16 C -0.685 4.685 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.202 1.202 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.051 4.051 25 C -0.029 4.029 26 O -0.294 6.294 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.238 0.762 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.123 0.877 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.119 0.881 44 H 0.077 0.923 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -19.655 16.048 -8.226 26.674 hybrid contribution 2.380 1.665 -0.211 2.912 sum -17.275 17.712 -8.437 26.140 Atomic orbital electron populations 1.21615 0.92420 1.02897 1.02126 1.21314 0.98463 0.97353 0.96525 1.21793 1.01320 0.94090 1.02986 1.20721 0.81922 0.79418 0.87739 1.90711 1.55305 1.48556 1.47154 1.45896 1.07283 1.59018 1.25420 1.21304 0.90576 0.98577 0.88966 1.22724 0.93670 0.84064 0.98781 0.91011 1.22050 0.80960 1.02467 0.98031 1.48128 1.05948 1.06280 1.75790 1.20393 0.88488 0.83720 0.74890 1.90706 1.76909 1.23083 1.47849 1.23550 0.93482 1.08371 1.04726 1.85442 1.01716 0.99944 1.96162 1.22845 0.91303 0.95477 1.58852 0.90909 1.24998 0.99581 0.94501 0.94483 1.70016 1.33562 1.00102 1.46495 0.86160 0.82404 0.78425 0.78463 1.20233 1.20714 1.19691 1.22429 1.00519 0.82549 0.99589 1.23014 0.80811 1.01538 0.97502 1.87962 1.21251 1.25768 1.94424 0.91905 0.92030 0.91922 0.88497 0.91986 0.92012 0.91364 0.76195 0.89470 0.90215 0.90541 0.87664 0.89234 0.89125 0.92119 0.90484 0.88150 0.92326 0.87394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.90 8.48 37.16 0.32 -0.59 16 2 C -0.12 -0.74 3.26 -91.77 -0.30 -1.04 16 3 C -0.14 -0.71 9.09 37.16 0.34 -0.37 16 4 C 0.52 4.96 7.15 -10.99 -0.08 4.88 16 5 O -0.54 -7.39 15.98 5.56 0.09 -7.30 16 6 N -0.72 -5.87 5.40 -60.29 -0.33 -6.19 16 7 C 0.13 1.17 5.34 -4.05 -0.02 1.15 16 8 C 0.07 0.62 2.81 -26.58 -0.07 0.54 16 9 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 10 C 0.09 1.03 5.93 -3.54 -0.02 1.00 16 11 N -0.62 -8.41 3.02 -172.28 -0.52 -8.93 16 12 C 0.54 9.81 7.73 -10.99 -0.08 9.73 16 13 O -0.51 -11.34 15.33 5.56 0.09 -11.25 16 14 C -0.15 -2.94 4.53 36.00 0.16 -2.77 16 15 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 16 C -0.54 -14.94 9.50 30.94 0.29 -14.65 16 17 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 18 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 19 N -0.87 -25.77 13.22 55.49 0.73 -25.03 16 20 Si 0.92 20.99 29.55 -169.99 -5.02 15.97 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 C 0.07 0.72 6.54 -3.53 -0.02 0.70 16 25 C 0.05 0.39 6.99 37.31 0.26 0.65 16 26 O -0.38 -3.45 10.33 -35.23 -0.36 -3.82 16 27 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 30 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.26 7.56 -51.93 -0.39 -0.13 16 33 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.40 2.47 7.89 -40.82 -0.32 2.15 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.11 1.36 7.08 -51.93 -0.37 0.99 16 39 H 0.09 1.58 7.66 -51.92 -0.40 1.18 16 40 H 0.09 1.63 8.01 -51.92 -0.42 1.22 16 41 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.10 0.97 6.05 -51.93 -0.31 0.66 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 383.71 15.07 5.78 5.78 Total: -1.00 -35.97 383.71 -8.33 -44.30 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -7.25 Total: -0.95 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 0.67 Total: 1.21 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: -0.11 Total: -40.16 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.19 Total: -22.37 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.97 -8.33 -44.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001064881061.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.143 kcal (2) G-P(sol) polarization free energy of solvation -35.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds