Wall clock time and date at job start Tue Mar 31 2020 05:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47158 * 2 1 4 4 C 1.50700 * 109.47216 * 120.00403 * 2 1 3 5 5 O 1.21272 * 119.99945 * 359.97438 * 4 2 1 6 6 N 1.34775 * 119.99722 * 180.02562 * 4 2 1 7 7 C 1.46503 * 119.99804 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.46778 * 179.97438 * 7 6 4 9 9 H 1.09000 * 109.51596 * 59.90383 * 8 7 6 10 10 C 1.53304 * 109.50891 * 180.02562 * 8 7 6 11 11 N 1.47154 * 108.38286 * 172.27731 * 10 8 7 12 12 C 1.34775 * 120.97848 * 129.43920 * 11 10 8 13 13 O 1.21282 * 120.00577 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99768 * 179.97438 * 12 11 10 15 15 S 1.81002 * 109.47349 * 180.02562 * 14 12 11 16 16 C 1.76199 * 100.00182 * 180.02562 * 15 14 12 17 17 H 1.07999 * 119.99976 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99949 * 179.97438 * 16 15 14 19 19 N 1.31624 * 119.99746 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00005 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46889 * 89.99690 * 20 18 16 22 22 H 1.48494 * 109.47191 * 209.99639 * 20 18 16 23 23 H 1.48501 * 109.46989 * 330.00246 * 20 18 16 24 24 C 1.47153 * 118.03761 * 309.71561 * 11 10 8 25 25 C 1.52875 * 108.60491 * 50.22527 * 24 11 10 26 26 O 1.42956 * 109.55743 * 299.76971 * 8 7 6 27 27 H 1.09003 * 109.47027 * 299.99762 * 1 2 3 28 28 H 1.09000 * 109.47631 * 59.99597 * 1 2 3 29 29 H 1.09008 * 109.46994 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47027 * 240.00238 * 2 1 3 31 31 H 1.08999 * 109.47540 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.47539 * 300.00694 * 3 2 1 33 33 H 1.09003 * 109.46957 * 60.00195 * 3 2 1 34 34 H 0.97006 * 120.00342 * 0.02562 * 6 4 2 35 35 H 1.08999 * 109.46789 * 60.00095 * 7 6 4 36 36 H 1.09003 * 109.47184 * 300.00032 * 7 6 4 37 37 H 1.08992 * 109.68442 * 52.55136 * 10 8 7 38 38 H 1.09000 * 109.67823 * 291.99673 * 10 8 7 39 39 H 1.09005 * 109.46867 * 60.00428 * 14 12 11 40 40 H 1.09000 * 109.47235 * 300.00468 * 14 12 11 41 41 H 0.97005 * 119.99717 * 180.02562 * 19 18 16 42 42 H 1.08994 * 109.68075 * 170.00752 * 24 11 10 43 43 H 1.08997 * 109.67837 * 290.56055 * 24 11 10 44 44 H 1.09004 * 109.57740 * 187.92399 * 25 24 11 45 45 H 1.08997 * 109.40961 * 67.85136 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 1.2443 -1.1710 2.0289 6 7 3.3574 -0.8331 1.4439 7 6 3.8458 -1.5234 2.6403 8 6 5.3758 -1.5234 2.6401 9 1 5.7400 -0.4960 2.6379 10 6 5.8879 -2.2460 3.8914 11 7 7.3472 -2.3962 3.7760 12 6 8.1647 -2.0209 4.7796 13 8 7.7002 -1.5518 5.7971 14 6 9.6560 -2.1852 4.6381 15 16 10.4734 -1.5956 6.1415 16 6 12.1559 -1.8957 5.7129 17 1 12.4002 -2.3248 4.7524 18 6 13.1675 -1.5797 6.6093 19 7 14.4243 -1.8044 6.2893 20 14 12.7450 -0.8369 8.2704 21 1 12.5451 -1.9239 9.2623 22 1 13.8556 0.0421 8.7165 23 1 11.4983 -0.0386 8.1530 24 6 7.8879 -2.9625 2.5301 25 6 7.2780 -2.2100 1.3473 26 8 5.8542 -2.2021 1.4764 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.9878 -0.4638 0.8057 35 1 3.4828 -2.5511 2.6404 36 1 3.4822 -1.0094 3.5301 37 1 5.4223 -3.2288 3.9642 38 1 5.6482 -1.6591 4.7781 39 1 10.0058 -1.6064 3.7831 40 1 9.8927 -3.2382 4.4853 41 1 15.1312 -1.5839 6.9159 42 1 8.9719 -2.8499 2.5158 43 1 7.6271 -4.0187 2.4634 44 1 7.5565 -2.7047 0.4168 45 1 7.6490 -1.1852 1.3399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001064881062.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:34 Heat of formation + Delta-G solvation = -124.108468 kcal Electronic energy + Delta-G solvation = -25799.594779 eV Core-core repulsion = 21943.252117 eV Total energy + Delta-G solvation = -3856.342662 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.63476 -40.01508 -38.42527 -35.47214 -34.86085 -34.71550 -32.49525 -32.27539 -29.76928 -28.64731 -27.51296 -26.08757 -25.59606 -23.96537 -23.07558 -21.77906 -20.20251 -19.46680 -17.89199 -17.58882 -17.14973 -16.95633 -16.57836 -15.79997 -15.72216 -15.64397 -15.14983 -15.01077 -14.96172 -14.38700 -14.15573 -13.88156 -13.75246 -13.37717 -13.34938 -12.94016 -12.84627 -12.74292 -12.58150 -12.33598 -12.20389 -11.99575 -11.66620 -11.58529 -11.49195 -11.31545 -11.06135 -11.05268 -10.67215 -10.46637 -10.07748 -9.91284 -9.62118 -9.41580 -9.05783 -8.71067 -8.56706 -6.99287 -6.34362 -4.07018 2.34226 2.46859 2.74582 2.84849 3.07100 3.22541 3.29192 3.45934 3.50813 4.23761 4.27497 4.33805 4.40988 4.47783 4.51617 4.53375 4.64634 4.69156 4.84466 4.92912 4.97414 5.04351 5.05302 5.17124 5.19541 5.25073 5.27468 5.39809 5.42444 5.46477 5.52229 5.53490 5.62373 5.66886 5.70306 5.85313 5.87305 6.04874 6.27142 6.68946 7.15131 7.25082 7.88433 7.90545 8.26340 8.35380 9.11661 10.74695 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.028082 B = 0.002089 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.829102 B =13401.810843 C =13675.257301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 C -0.145 4.145 4 C 0.516 3.484 5 O -0.541 6.541 6 N -0.723 5.723 7 C 0.130 3.870 8 C 0.066 3.934 9 H 0.072 0.928 10 C 0.089 3.911 11 N -0.622 5.622 12 C 0.536 3.464 13 O -0.514 6.514 14 C -0.122 4.122 15 S -0.141 6.141 16 C -0.523 4.523 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.879 5.879 20 Si 0.856 3.144 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.236 1.236 24 C 0.071 3.929 25 C 0.049 3.951 26 O -0.375 6.375 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.404 0.596 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.271 0.729 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.110 0.890 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.285 2.242 -16.979 28.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.136 4.136 3 C -0.203 4.203 4 C 0.302 3.698 5 O -0.418 6.418 6 N -0.376 5.376 7 C 0.006 3.994 8 C 0.007 3.993 9 H 0.090 0.910 10 C -0.035 4.035 11 N -0.359 5.359 12 C 0.324 3.676 13 O -0.388 6.388 14 C -0.272 4.272 15 S 0.086 5.914 16 C -0.670 4.670 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.515 5.515 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.160 1.160 24 C -0.052 4.052 25 C -0.029 4.029 26 O -0.294 6.294 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.239 0.761 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.123 0.877 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.081 0.919 42 H 0.120 0.880 43 H 0.097 0.903 44 H 0.128 0.872 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.446 2.520 -14.937 27.914 hybrid contribution 1.402 -0.135 -0.677 1.563 sum -22.045 2.384 -15.615 27.119 Atomic orbital electron populations 1.21617 0.92414 1.02882 1.02153 1.21308 0.98455 0.97296 0.96561 1.21802 1.01221 0.94156 1.03096 1.20725 0.81918 0.79438 0.87713 1.90709 1.55311 1.48626 1.47112 1.45872 1.07278 1.58863 1.25546 1.21308 0.90485 0.98873 0.88728 1.22726 0.93723 0.96406 0.86409 0.90996 1.22073 0.80776 1.01922 0.98739 1.48082 1.06005 1.64903 1.16921 1.20357 0.88455 0.76509 0.82305 1.90703 1.76896 1.43044 1.28157 1.23306 0.92955 1.05607 1.05364 1.84834 1.04387 1.82804 1.19412 1.22290 0.88603 1.49089 1.07039 0.89364 1.24709 0.94036 0.94100 0.98415 1.69933 0.98973 1.45987 1.36611 0.86738 0.80330 0.80818 0.83988 1.19162 1.19880 1.15956 1.22376 1.00563 0.98510 0.83765 1.22943 0.80742 1.00659 0.98524 1.87958 1.21283 1.77219 1.42913 0.91891 0.92016 0.91937 0.88439 0.92124 0.91281 0.91952 0.76106 0.90273 0.89521 0.90424 0.87673 0.88474 0.88395 0.91884 0.88039 0.90326 0.87230 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.88 8.48 37.16 0.32 -0.56 16 2 C -0.11 -0.71 3.26 -91.77 -0.30 -1.01 16 3 C -0.15 -0.69 9.09 37.16 0.34 -0.35 16 4 C 0.52 4.83 7.15 -10.99 -0.08 4.75 16 5 O -0.54 -7.25 15.98 5.56 0.09 -7.16 16 6 N -0.72 -5.65 5.34 -60.29 -0.32 -5.97 16 7 C 0.13 1.12 5.37 -4.04 -0.02 1.10 16 8 C 0.07 0.58 2.86 -26.58 -0.08 0.51 16 9 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 10 C 0.09 0.97 5.93 -3.53 -0.02 0.95 16 11 N -0.62 -7.93 3.03 -172.53 -0.52 -8.45 16 12 C 0.54 9.26 7.73 -10.98 -0.08 9.17 16 13 O -0.51 -10.75 15.33 5.56 0.09 -10.67 16 14 C -0.12 -2.26 4.53 36.01 0.16 -2.10 16 15 S -0.14 -3.49 18.55 -107.50 -1.99 -5.48 16 16 C -0.52 -14.71 10.04 30.94 0.31 -14.40 16 17 H 0.09 2.57 8.03 -52.49 -0.42 2.15 16 18 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 19 N -0.88 -26.04 13.97 55.49 0.78 -25.27 16 20 Si 0.86 21.45 27.74 -169.99 -4.72 16.74 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 24 C 0.07 0.67 6.51 -3.75 -0.02 0.65 16 25 C 0.05 0.37 6.97 37.09 0.26 0.63 16 26 O -0.37 -3.28 10.15 -35.23 -0.36 -3.64 16 27 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.47 8.10 -51.92 -0.42 0.05 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.24 7.56 -51.93 -0.39 -0.15 16 32 H 0.07 0.24 8.14 -51.92 -0.42 -0.18 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.40 2.39 7.77 -40.82 -0.32 2.07 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.11 1.28 7.08 -51.93 -0.37 0.91 16 39 H 0.10 1.65 7.65 -51.91 -0.40 1.25 16 40 H 0.10 1.70 8.03 -51.92 -0.42 1.28 16 41 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.10 0.94 6.05 -51.93 -0.31 0.62 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 380.70 15.07 5.74 5.74 Total: -1.00 -35.54 380.70 -7.81 -43.36 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -7.27 Total: -1.19 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 0.68 Total: 2.00 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: -0.07 Total: -39.69 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.18 Total: -21.47 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.72 Total: 16.74 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.99 Total: -5.48 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.54 -7.81 -43.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001064881062.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.751 kcal (2) G-P(sol) polarization free energy of solvation -35.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds