Wall clock time and date at job start Tue Mar 31 2020 06:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.87592 * 2 1 4 4 C 1.54332 * 109.88261 * 121.01715 * 2 1 3 5 5 H 1.09001 * 110.71550 * 215.92071 * 4 2 1 6 6 N 1.46505 * 110.71747 * 339.01331 * 4 2 1 7 7 C 1.36931 * 119.99788 * 205.00190 * 6 4 2 8 8 H 1.08002 * 120.00438 * 0.02562 * 7 6 4 9 9 C 1.38817 * 119.99680 * 179.72358 * 7 6 4 10 10 N 1.31614 * 119.99888 * 0.27479 * 9 7 6 11 11 Si 1.86803 * 119.99862 * 180.27671 * 9 7 6 12 12 H 1.48496 * 109.47141 * 59.99751 * 11 9 7 13 13 H 1.48490 * 109.47071 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46993 * 300.00028 * 11 9 7 15 15 C 1.55150 * 102.94391 * 97.37655 * 4 2 1 16 16 C 1.54906 * 101.58255 * 35.50456 * 15 4 2 17 17 N 1.47019 * 110.01075 * 238.89681 * 2 1 3 18 18 C 1.34777 * 125.64806 * 59.49119 * 17 2 1 19 19 O 1.21278 * 119.99910 * 359.97438 * 18 17 2 20 20 C 1.50706 * 120.00101 * 179.97438 * 18 17 2 21 21 C 1.53002 * 109.47026 * 179.97438 * 20 18 17 22 22 H 1.08995 * 110.01340 * 54.29661 * 21 20 18 23 23 C 1.53878 * 110.02395 * 292.92143 * 21 20 18 24 24 C 1.54197 * 108.68876 * 193.57496 * 23 21 20 25 25 S 1.82920 * 105.10922 * 27.83468 * 24 23 21 26 26 O 1.42101 * 109.35669 * 244.52003 * 25 24 23 27 27 O 1.42095 * 109.47678 * 111.35178 * 25 24 23 28 28 C 1.55047 * 110.02729 * 175.67972 * 21 20 18 29 29 H 1.09000 * 109.47372 * 298.98821 * 1 2 3 30 30 H 1.08997 * 109.47129 * 58.98737 * 1 2 3 31 31 H 1.09001 * 109.47362 * 178.98610 * 1 2 3 32 32 H 0.97000 * 119.99792 * 24.99985 * 6 4 2 33 33 H 0.97005 * 119.99715 * 179.97438 * 10 9 7 34 34 H 1.09000 * 111.00256 * 153.57994 * 15 4 2 35 35 H 1.09000 * 111.00472 * 277.42737 * 15 4 2 36 36 H 1.09004 * 110.36727 * 204.15442 * 16 15 4 37 37 H 1.08995 * 110.37119 * 81.82663 * 16 15 4 38 38 H 1.09000 * 109.47048 * 300.00158 * 20 18 17 39 39 H 1.09005 * 109.46758 * 60.00028 * 20 18 17 40 40 H 1.09002 * 109.64755 * 313.37911 * 23 21 20 41 41 H 1.09003 * 109.65138 * 73.67785 * 23 21 20 42 42 H 1.09002 * 110.27199 * 268.94632 * 24 23 21 43 43 H 1.08990 * 110.43181 * 146.80450 * 24 23 21 44 44 H 1.08995 * 110.79258 * 279.99452 * 28 21 20 45 45 H 1.09004 * 110.78853 * 43.26710 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0548 -0.7479 1.2438 5 1 2.9624 -0.2774 1.6221 6 7 1.0279 -0.8026 2.2873 7 6 1.3926 -0.9373 3.6003 8 1 2.4372 -1.0028 3.8667 9 6 0.4198 -0.9834 4.5895 10 7 -0.8531 -0.9031 4.2649 11 14 0.9176 -1.1594 6.3814 12 1 1.7730 -0.0104 6.7726 13 1 -0.2987 -1.1842 7.2328 14 1 1.6742 -2.4242 6.5630 15 6 2.3556 -2.1674 0.6946 16 6 2.8618 -1.8473 -0.7340 17 7 2.0331 -0.7136 -1.1828 18 6 1.7794 -0.3852 -2.4651 19 8 1.0808 0.5731 -2.7189 20 6 2.3638 -1.2090 -3.5837 21 6 1.9246 -0.6270 -4.9288 22 1 2.1839 0.4304 -4.9803 23 6 0.4072 -0.8069 -5.1105 24 6 0.0503 -0.5334 -6.5855 25 16 1.5589 -0.9596 -7.5280 26 8 2.0747 0.2114 -8.1461 27 8 1.3179 -2.1234 -8.3069 28 6 2.6058 -1.3980 -6.0888 29 1 -0.3634 0.4980 0.8989 30 1 -0.3633 0.5295 -0.8807 31 1 -0.3634 -1.0275 -0.0182 32 1 0.0898 -0.7434 2.0481 33 1 -1.5329 -0.9357 4.9562 34 1 3.1310 -2.6578 1.2831 35 1 1.4503 -2.7735 0.6617 36 1 2.7164 -2.7062 -1.3893 37 1 3.9134 -1.5620 -0.7089 38 1 3.4517 -1.1916 -3.5176 39 1 2.0111 -2.2370 -3.5004 40 1 0.1251 -1.8268 -4.8489 41 1 -0.1247 -0.1054 -4.4678 42 1 -0.1985 0.5187 -6.7250 43 1 -0.7821 -1.1633 -6.8986 44 1 3.6290 -1.0521 -6.2350 45 1 2.5849 -2.4721 -5.9043 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074734026.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:38 Heat of formation + Delta-G solvation = -89.423722 kcal Electronic energy + Delta-G solvation = -26751.394506 eV Core-core repulsion = 22896.555888 eV Total energy + Delta-G solvation = -3854.838618 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.29967 -38.21011 -37.34374 -36.62963 -36.26288 -34.27723 -32.06113 -31.17887 -30.77580 -29.38008 -28.13011 -25.29544 -24.73977 -23.49715 -22.67322 -21.19799 -19.66903 -19.18146 -18.69357 -17.66958 -17.31430 -16.88824 -16.68511 -16.07561 -15.72014 -15.43345 -14.90031 -14.69492 -14.46735 -14.32253 -13.82499 -13.75636 -13.36998 -13.09061 -12.74367 -12.60633 -12.46691 -12.39125 -12.35195 -12.24170 -12.09305 -11.83061 -11.71918 -11.62139 -11.28793 -11.20574 -11.02558 -10.95715 -10.86634 -10.66288 -10.52817 -10.29402 -10.08513 -9.79261 -9.54575 -9.01267 -8.49705 -7.09898 -5.87957 -3.18102 -0.28942 2.17244 2.65361 3.00925 3.26026 3.37088 3.42129 3.43088 3.64475 3.92078 4.19959 4.24002 4.44499 4.49553 4.54879 4.61053 4.83742 4.91023 4.97413 5.12641 5.17956 5.25665 5.31231 5.34931 5.41242 5.47331 5.51560 5.56591 5.71818 5.74572 5.84838 5.96420 6.03504 6.14992 6.23848 6.47555 6.48346 6.62312 6.76038 6.90053 7.59493 7.67071 8.21864 8.30534 9.42115 9.96496 10.31307 11.34301 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.038014 B = 0.002230 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.396506 B =12551.695970 C =12823.860093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.126 3.874 3 H 0.071 0.929 4 C 0.173 3.827 5 H 0.065 0.935 6 N -0.716 5.716 7 C -0.247 4.247 8 H 0.071 0.929 9 C -0.009 4.009 10 N -0.931 5.931 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.155 4.155 16 C 0.096 3.904 17 N -0.608 5.608 18 C 0.524 3.476 19 O -0.542 6.542 20 C -0.125 4.125 21 C -0.072 4.072 22 H 0.105 0.895 23 C -0.116 4.116 24 C -0.586 4.586 25 S 2.385 3.615 26 O -0.939 6.939 27 O -0.943 6.943 28 C -0.588 4.588 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.391 0.609 33 H 0.257 0.743 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.112 0.888 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.814 -2.828 -20.051 21.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.022 3.978 3 H 0.089 0.911 4 C 0.061 3.939 5 H 0.083 0.917 6 N -0.359 5.359 7 C -0.378 4.378 8 H 0.089 0.911 9 C -0.206 4.206 10 N -0.578 5.578 11 Si 0.740 3.260 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.196 4.196 16 C -0.027 4.027 17 N -0.342 5.342 18 C 0.312 3.688 19 O -0.421 6.421 20 C -0.165 4.165 21 C -0.092 4.092 22 H 0.123 0.877 23 C -0.155 4.155 24 C -0.717 4.717 25 S 2.570 3.430 26 O -0.936 6.936 27 O -0.940 6.940 28 C -0.717 4.717 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.229 0.771 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.100 0.900 41 H 0.130 0.870 42 H 0.156 0.844 43 H 0.155 0.845 44 H 0.157 0.843 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.650 -2.292 -21.064 22.207 hybrid contribution -0.142 -0.289 1.862 1.890 sum 6.508 -2.581 -19.202 20.438 Atomic orbital electron populations 1.21990 0.94527 1.02262 1.02779 1.21893 0.95420 0.95827 0.84622 0.91122 1.21184 0.93253 0.91997 0.87445 0.91660 1.42651 1.04451 1.87023 1.01777 1.19199 0.92541 1.43026 0.83067 0.91102 1.24763 0.95228 1.02473 0.98135 1.69645 0.98887 1.56752 1.32551 0.86245 0.77060 0.77932 0.84773 1.21180 1.21663 1.21206 1.23563 1.01682 1.01413 0.92953 1.22403 0.94538 0.88400 0.97361 1.48642 1.49881 1.30537 1.05102 1.20142 0.81043 0.85164 0.82449 1.90665 1.39007 1.29229 1.83153 1.21624 1.02783 1.00487 0.91652 1.21603 0.93958 1.01008 0.92613 0.87675 1.22114 0.95202 1.04992 0.93149 1.30461 1.19369 1.12421 1.09407 1.09121 0.79965 0.75731 0.78193 1.93624 1.78009 1.48441 1.73554 1.93610 1.84485 1.49154 1.66772 1.30755 1.13809 1.10412 1.16747 0.90155 0.92188 0.92689 0.77122 0.93269 0.90556 0.90706 0.91329 0.91566 0.88171 0.88328 0.90017 0.86961 0.84448 0.84466 0.84271 0.84221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 7.94 37.16 0.29 -2.47 16 2 C 0.13 2.06 3.47 -66.95 -0.23 1.83 16 3 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 4 C 0.17 3.11 3.49 -66.09 -0.23 2.88 16 5 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 6 N -0.72 -16.57 4.93 -51.65 -0.25 -16.82 16 7 C -0.25 -6.43 9.96 -15.06 -0.15 -6.58 16 8 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 9 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 10 N -0.93 -26.91 13.06 55.49 0.72 -26.18 16 11 Si 0.91 21.42 29.55 -169.99 -5.02 16.40 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 15 C -0.15 -2.29 6.77 -24.59 -0.17 -2.45 16 16 C 0.10 1.06 6.69 -2.53 -0.02 1.05 16 17 N -0.61 -8.06 3.08 -163.02 -0.50 -8.56 16 18 C 0.52 6.50 7.41 -10.98 -0.08 6.42 16 19 O -0.54 -8.32 13.16 5.56 0.07 -8.24 16 20 C -0.12 -0.96 4.20 -27.88 -0.12 -1.08 16 21 C -0.07 -0.51 2.22 -89.08 -0.20 -0.71 16 22 H 0.11 0.82 7.95 -51.93 -0.41 0.41 16 23 C -0.12 -0.86 5.33 -25.65 -0.14 -1.00 16 24 C -0.59 -3.58 7.26 37.78 0.27 -3.31 16 25 S 2.39 17.67 6.10 -107.50 -0.66 17.01 16 26 O -0.94 -10.50 18.15 -57.73 -1.05 -11.55 16 27 O -0.94 -10.17 18.15 -57.73 -1.05 -11.22 16 28 C -0.59 -2.98 6.67 38.24 0.26 -2.72 16 29 H 0.08 1.58 6.77 -51.93 -0.35 1.23 16 30 H 0.06 1.04 6.77 -51.93 -0.35 0.69 16 31 H 0.05 0.98 8.03 -51.93 -0.42 0.56 16 32 H 0.39 9.61 5.06 -40.82 -0.21 9.40 16 33 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.07 0.59 7.48 -51.93 -0.39 0.20 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.10 0.59 7.79 -51.93 -0.40 0.18 16 40 H 0.08 0.50 8.05 -51.93 -0.42 0.08 16 41 H 0.11 1.09 6.55 -51.93 -0.34 0.75 16 42 H 0.14 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.14 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.14 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.14 0.46 8.10 -51.93 -0.42 0.04 16 LS Contribution 366.32 15.07 5.52 5.52 Total: -1.00 -35.40 366.32 -9.87 -45.27 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -7.06 Total: 6.87 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -0.60 Total: -8.50 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: -0.03 Total: -51.57 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -2.02 Total: -31.01 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 17.67 SS G_CDS: -0.66 Total: 17.01 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.40 -9.87 -45.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074734026.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.149 kcal (2) G-P(sol) polarization free energy of solvation -35.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds