Wall clock time and date at job start Tue Mar 31 2020 06:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.87592 * 2 1 4 4 C 1.54332 * 109.88261 * 121.01715 * 2 1 3 5 5 H 1.09001 * 110.71550 * 215.92071 * 4 2 1 6 6 N 1.46505 * 110.71747 * 339.01331 * 4 2 1 7 7 C 1.36931 * 119.99788 * 205.00190 * 6 4 2 8 8 H 1.08002 * 120.00438 * 0.02562 * 7 6 4 9 9 C 1.38817 * 119.99680 * 179.72358 * 7 6 4 10 10 N 1.31614 * 119.99888 * 0.27479 * 9 7 6 11 11 Si 1.86803 * 119.99862 * 180.27671 * 9 7 6 12 12 H 1.48496 * 109.47141 * 59.99751 * 11 9 7 13 13 H 1.48490 * 109.47071 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46993 * 300.00028 * 11 9 7 15 15 C 1.55150 * 102.94391 * 97.37655 * 4 2 1 16 16 C 1.54906 * 101.58255 * 35.50456 * 15 4 2 17 17 N 1.47019 * 110.01075 * 238.89681 * 2 1 3 18 18 C 1.34777 * 125.64806 * 59.49119 * 17 2 1 19 19 O 1.21278 * 119.99910 * 359.97438 * 18 17 2 20 20 C 1.50706 * 120.00101 * 179.97438 * 18 17 2 21 21 C 1.53002 * 109.47026 * 179.97438 * 20 18 17 22 22 H 1.08995 * 110.01340 * 54.29661 * 21 20 18 23 23 C 1.53878 * 110.02395 * 292.92143 * 21 20 18 24 24 C 1.54197 * 108.68876 * 193.57496 * 23 21 20 25 25 S 1.82920 * 105.10922 * 27.83468 * 24 23 21 26 26 O 1.42101 * 109.35669 * 244.52003 * 25 24 23 27 27 O 1.42095 * 109.47678 * 111.35178 * 25 24 23 28 28 C 1.55047 * 110.02729 * 175.67972 * 21 20 18 29 29 H 1.09000 * 109.47372 * 298.98821 * 1 2 3 30 30 H 1.08997 * 109.47129 * 58.98737 * 1 2 3 31 31 H 1.09001 * 109.47362 * 178.98610 * 1 2 3 32 32 H 0.97000 * 119.99792 * 24.99985 * 6 4 2 33 33 H 0.97005 * 119.99715 * 179.97438 * 10 9 7 34 34 H 1.09000 * 111.00256 * 153.57994 * 15 4 2 35 35 H 1.09000 * 111.00472 * 277.42737 * 15 4 2 36 36 H 1.09004 * 110.36727 * 204.15442 * 16 15 4 37 37 H 1.08995 * 110.37119 * 81.82663 * 16 15 4 38 38 H 1.09000 * 109.47048 * 300.00158 * 20 18 17 39 39 H 1.09005 * 109.46758 * 60.00028 * 20 18 17 40 40 H 1.09002 * 109.64755 * 313.37911 * 23 21 20 41 41 H 1.09003 * 109.65138 * 73.67785 * 23 21 20 42 42 H 1.09002 * 110.27199 * 268.94632 * 24 23 21 43 43 H 1.08990 * 110.43181 * 146.80450 * 24 23 21 44 44 H 1.08995 * 110.79258 * 279.99452 * 28 21 20 45 45 H 1.09004 * 110.78853 * 43.26710 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0548 -0.7479 1.2438 5 1 2.9624 -0.2774 1.6221 6 7 1.0279 -0.8026 2.2873 7 6 1.3926 -0.9373 3.6003 8 1 2.4372 -1.0028 3.8667 9 6 0.4198 -0.9834 4.5895 10 7 -0.8531 -0.9031 4.2649 11 14 0.9176 -1.1594 6.3814 12 1 1.7730 -0.0104 6.7726 13 1 -0.2987 -1.1842 7.2328 14 1 1.6742 -2.4242 6.5630 15 6 2.3556 -2.1674 0.6946 16 6 2.8618 -1.8473 -0.7340 17 7 2.0331 -0.7136 -1.1828 18 6 1.7794 -0.3852 -2.4651 19 8 1.0808 0.5731 -2.7189 20 6 2.3638 -1.2090 -3.5837 21 6 1.9246 -0.6270 -4.9288 22 1 2.1839 0.4304 -4.9803 23 6 0.4072 -0.8069 -5.1105 24 6 0.0503 -0.5334 -6.5855 25 16 1.5589 -0.9596 -7.5280 26 8 2.0747 0.2114 -8.1461 27 8 1.3179 -2.1234 -8.3069 28 6 2.6058 -1.3980 -6.0888 29 1 -0.3634 0.4980 0.8989 30 1 -0.3633 0.5295 -0.8807 31 1 -0.3634 -1.0275 -0.0182 32 1 0.0898 -0.7434 2.0481 33 1 -1.5329 -0.9357 4.9562 34 1 3.1310 -2.6578 1.2831 35 1 1.4503 -2.7735 0.6617 36 1 2.7164 -2.7062 -1.3893 37 1 3.9134 -1.5620 -0.7089 38 1 3.4517 -1.1916 -3.5176 39 1 2.0111 -2.2370 -3.5004 40 1 0.1251 -1.8268 -4.8489 41 1 -0.1247 -0.1054 -4.4678 42 1 -0.1985 0.5187 -6.7250 43 1 -0.7821 -1.1633 -6.8986 44 1 3.6290 -1.0521 -6.2350 45 1 2.5849 -2.4721 -5.9043 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074734026.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:38 Heat of formation + Delta-G solvation = -115.970201 kcal Electronic energy + Delta-G solvation = -26752.545648 eV Core-core repulsion = 22896.555888 eV Total energy + Delta-G solvation = -3855.989760 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.32936 -39.24636 -38.05305 -37.41551 -36.96990 -35.88910 -33.54104 -32.18940 -31.86163 -30.65850 -28.96309 -26.74421 -25.63714 -24.97812 -23.71716 -21.93242 -20.76409 -19.93702 -19.67324 -19.44058 -18.19007 -17.65959 -17.38885 -17.02568 -16.65561 -16.41908 -16.30001 -15.82599 -15.52401 -15.20401 -14.98693 -14.77546 -14.45838 -14.23694 -13.81901 -13.55476 -13.48864 -13.20856 -13.16656 -13.07786 -13.01269 -12.94860 -12.85315 -12.80290 -12.68202 -12.44694 -12.28170 -12.10551 -12.03257 -11.73409 -11.59771 -11.55313 -11.47864 -11.27541 -10.89240 -10.57762 -9.57451 -8.99810 -7.93318 -5.21826 -0.84445 1.49812 1.51984 1.57932 1.63248 1.73855 2.05080 2.58444 2.69451 3.08858 3.33039 3.39878 3.59444 3.70663 3.76943 3.83461 3.95416 3.99939 4.03699 4.10673 4.25116 4.35954 4.41646 4.45117 4.50857 4.61356 4.70790 4.75467 4.76967 4.84089 4.89247 4.90384 4.94763 5.09897 5.20318 5.25124 5.25948 5.31269 5.38508 5.53574 5.56852 6.28545 6.69524 7.26356 7.35923 8.10717 8.33393 9.30097 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.038014 B = 0.002230 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.396506 B =12551.695970 C =12823.860093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.133 3.867 3 H 0.059 0.941 4 C 0.163 3.837 5 H 0.066 0.934 6 N -0.732 5.732 7 C -0.239 4.239 8 H 0.081 0.919 9 C -0.076 4.076 10 N -0.971 5.971 11 Si 0.972 3.028 12 H -0.279 1.279 13 H -0.301 1.301 14 H -0.276 1.276 15 C -0.147 4.147 16 C 0.105 3.895 17 N -0.611 5.611 18 C 0.517 3.483 19 O -0.579 6.579 20 C -0.117 4.117 21 C -0.077 4.077 22 H 0.094 0.906 23 C -0.121 4.121 24 C -0.578 4.578 25 S 2.390 3.610 26 O -0.985 6.985 27 O -0.980 6.980 28 C -0.559 4.559 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.380 0.620 33 H 0.250 0.750 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.137 0.863 43 H 0.152 0.848 44 H 0.161 0.839 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.418 -4.714 -20.910 23.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.028 3.972 3 H 0.077 0.923 4 C 0.053 3.947 5 H 0.084 0.916 6 N -0.375 5.375 7 C -0.371 4.371 8 H 0.098 0.902 9 C -0.268 4.268 10 N -0.621 5.621 11 Si 0.801 3.199 12 H -0.206 1.206 13 H -0.227 1.227 14 H -0.202 1.202 15 C -0.188 4.188 16 C -0.017 4.017 17 N -0.344 5.344 18 C 0.307 3.693 19 O -0.459 6.459 20 C -0.158 4.158 21 C -0.097 4.097 22 H 0.112 0.888 23 C -0.159 4.159 24 C -0.709 4.709 25 S 2.579 3.421 26 O -0.982 6.982 27 O -0.977 6.977 28 C -0.691 4.691 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.216 0.784 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.126 0.874 37 H 0.111 0.889 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.118 0.882 41 H 0.104 0.896 42 H 0.156 0.844 43 H 0.170 0.830 44 H 0.179 0.821 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 9.318 -4.191 -22.002 24.259 hybrid contribution -0.934 0.352 2.108 2.332 sum 8.384 -3.839 -19.894 21.927 Atomic orbital electron populations 1.21794 0.95894 1.01245 1.01104 1.21536 0.94151 0.95615 0.85864 0.92289 1.21420 0.91871 0.94534 0.86897 0.91642 1.42834 1.05094 1.87352 1.02185 1.19620 0.92808 1.40279 0.84361 0.90161 1.25539 0.95323 1.03892 1.02031 1.69810 0.99825 1.59364 1.33146 0.85235 0.76263 0.78230 0.80156 1.20573 1.22731 1.20156 1.23358 1.01348 0.98359 0.95722 1.22541 0.95165 0.88849 0.95156 1.48696 1.50291 1.30906 1.04542 1.21120 0.80276 0.85080 0.82794 1.90666 1.40578 1.31084 1.83591 1.21733 1.04347 1.00676 0.88996 1.21613 0.93810 1.00929 0.93335 0.88814 1.22148 0.95501 1.05327 0.92956 1.30377 1.19152 1.12865 1.08477 1.08758 0.80329 0.74203 0.78817 1.93564 1.78977 1.50015 1.75637 1.93560 1.85246 1.49996 1.68933 1.30589 1.13661 1.12059 1.12822 0.93113 0.92327 0.93347 0.78420 0.94132 0.89659 0.92584 0.87406 0.88866 0.85086 0.85365 0.88182 0.89616 0.84427 0.83027 0.82093 0.81182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.16 7.94 71.98 0.57 -4.59 16 2 C 0.13 4.31 3.47 45.34 0.16 4.46 16 3 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 4 C 0.16 5.71 3.49 46.18 0.16 5.88 16 5 H 0.07 2.29 8.09 -2.39 -0.02 2.27 16 6 N -0.73 -34.41 4.93 -317.31 -1.57 -35.98 16 7 C -0.24 -12.46 9.96 84.04 0.84 -11.62 16 8 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 9 C -0.08 -4.17 5.50 84.86 0.47 -3.71 16 10 N -0.97 -57.88 13.06 21.65 0.28 -57.59 16 11 Si 0.97 44.46 29.55 68.60 2.03 46.49 16 12 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 13 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 14 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 15 C -0.15 -3.98 6.77 31.98 0.22 -3.76 16 16 C 0.10 1.83 6.69 86.85 0.58 2.41 16 17 N -0.61 -14.51 3.08 -788.05 -2.43 -16.94 16 18 C 0.52 11.37 7.41 87.66 0.65 12.02 16 19 O -0.58 -17.27 13.16 -3.02 -0.04 -17.31 16 20 C -0.12 -1.21 4.20 29.85 0.13 -1.08 16 21 C -0.08 -0.83 2.22 -9.80 -0.02 -0.85 16 22 H 0.09 1.27 7.95 -2.39 -0.02 1.25 16 23 C -0.12 -1.53 5.33 31.30 0.17 -1.36 16 24 C -0.58 -6.32 7.26 72.39 0.53 -5.79 16 25 S 2.39 31.96 6.10 -56.49 -0.34 31.62 16 26 O -0.98 -21.78 18.15 -127.47 -2.31 -24.09 16 27 O -0.98 -19.99 18.15 -127.47 -2.31 -22.30 16 28 C -0.56 -3.28 6.67 72.68 0.49 -2.79 16 29 H 0.05 2.12 6.77 -2.39 -0.02 2.10 16 30 H 0.06 2.10 6.77 -2.39 -0.02 2.09 16 31 H 0.05 1.77 8.03 -2.39 -0.02 1.76 16 32 H 0.38 19.39 5.06 -92.71 -0.47 18.93 16 33 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 34 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.11 1.14 7.48 -2.38 -0.02 1.12 16 37 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.13 0.65 8.14 -2.39 -0.02 0.64 16 39 H 0.13 0.66 7.79 -2.38 -0.02 0.64 16 40 H 0.10 0.88 8.05 -2.39 -0.02 0.86 16 41 H 0.09 1.62 6.55 -2.39 -0.02 1.60 16 42 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.15 1.20 8.14 -2.39 -0.02 1.19 16 44 H 0.16 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.17 0.10 8.10 -2.38 -0.02 0.08 16 Total: -1.00 -80.82 366.32 -1.25 -82.07 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: 0.52 Total: 24.82 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 4.92 Total: -10.79 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -3.71 Total: -110.51 kcal Atomic # 8 Polarization: -59.03 SS G_CDS: -4.67 Total: -63.70 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: 31.96 SS G_CDS: -0.34 Total: 31.62 kcal Total: -80.82 -1.25 -82.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074734026.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.900 kcal (2) G-P(sol) polarization free energy of solvation -80.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds