Wall clock time and date at job start Tue Mar 31 2020 07:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47066 * 2 1 4 4 C 1.53002 * 109.47405 * 119.99868 * 2 1 3 5 5 C 1.52995 * 109.47310 * 184.99992 * 4 2 1 6 6 N 1.46500 * 109.47071 * 180.02562 * 5 4 2 7 7 C 1.34780 * 119.99878 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99829 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99813 * 179.97438 * 7 6 5 10 10 H 1.09004 * 110.32619 * 57.25309 * 9 7 6 11 11 C 1.54475 * 110.37526 * 295.00018 * 9 7 6 12 12 C 1.54508 * 104.06243 * 217.19104 * 11 9 7 13 13 C 1.54476 * 104.06250 * 359.97438 * 12 11 9 14 14 O 1.44425 * 110.37051 * 179.61273 * 9 7 6 15 15 N 1.46496 * 109.47084 * 239.99963 * 2 1 3 16 16 C 1.34777 * 120.00271 * 84.99619 * 15 2 1 17 17 O 1.21278 * 119.99854 * 0.02562 * 16 15 2 18 18 C 1.50703 * 120.00161 * 180.02562 * 16 15 2 19 19 S 1.81002 * 109.47178 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00092 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00019 * 0.02562 * 20 19 18 22 22 C 1.38795 * 119.99810 * 179.97438 * 20 19 18 23 23 N 1.31635 * 119.99575 * 180.02562 * 22 20 19 24 24 Si 1.86793 * 120.00242 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47244 * 90.00194 * 24 22 20 26 26 H 1.48498 * 109.47205 * 209.99923 * 24 22 20 27 27 H 1.48496 * 109.47344 * 330.00405 * 24 22 20 28 28 H 1.08999 * 109.47646 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47057 * 300.00097 * 1 2 3 30 30 H 1.09002 * 109.47281 * 59.99892 * 1 2 3 31 31 H 1.09001 * 109.46658 * 305.00004 * 4 2 1 32 32 H 1.08998 * 109.46554 * 64.99605 * 4 2 1 33 33 H 1.09009 * 109.47221 * 299.99935 * 5 4 2 34 34 H 1.08990 * 109.47497 * 59.99628 * 5 4 2 35 35 H 0.96999 * 120.00020 * 359.97438 * 6 5 4 36 36 H 1.09000 * 110.51130 * 335.83575 * 11 9 7 37 37 H 1.09003 * 110.51327 * 98.40681 * 11 9 7 38 38 H 1.08998 * 110.51339 * 118.64005 * 12 11 9 39 39 H 1.09004 * 110.50829 * 241.35381 * 12 11 9 40 40 H 1.09003 * 110.37631 * 142.81085 * 13 12 11 41 41 H 1.09003 * 110.37593 * 265.03743 * 13 12 11 42 42 H 0.97005 * 120.00266 * 265.00202 * 15 2 1 43 43 H 1.09002 * 109.47152 * 60.00245 * 18 16 15 44 44 H 1.09001 * 109.46980 * 300.00345 * 18 16 15 45 45 H 0.97007 * 119.99682 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 7 4.0532 -1.3043 2.5095 7 6 5.3741 -1.3398 2.7751 8 8 6.1584 -0.7999 2.0239 9 6 5.8764 -2.0502 4.0056 10 1 5.5543 -3.0915 3.9996 11 6 5.3726 -1.3387 5.2808 12 6 6.5589 -1.4471 6.2648 13 6 7.6389 -2.2120 5.4679 14 8 7.3163 -1.9676 4.0812 15 7 2.0183 -0.6906 -1.1961 16 6 2.1469 -0.0183 -2.3572 17 8 1.8589 1.1585 -2.4115 18 6 2.6487 -0.7289 -3.5878 19 16 2.7104 0.4343 -4.9732 20 6 3.3120 -0.6314 -6.2409 21 1 3.5199 -1.6682 -6.0212 22 6 3.5176 -0.1386 -7.5220 23 7 3.9666 -0.9349 -8.4692 24 14 3.1559 1.6541 -7.9025 25 1 4.3753 2.4669 -7.6623 26 1 2.7455 1.7855 -9.3235 27 1 2.0595 2.1351 -7.0240 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.6054 -0.2616 2.1369 32 1 1.7516 -1.7714 1.2056 33 1 3.9995 -1.0728 0.4259 34 1 3.8532 0.4369 1.3572 35 1 3.4259 -1.7358 3.1105 36 1 5.1452 -0.2936 5.0705 37 1 4.4948 -1.8466 5.6802 38 1 6.9181 -0.4557 6.5409 39 1 6.2690 -2.0102 7.1519 40 1 8.6298 -1.8222 5.7009 41 1 7.5898 -3.2782 5.6890 42 1 2.2490 -1.6318 -1.1526 43 1 1.9758 -1.5507 -3.8326 44 1 3.6478 -1.1215 -3.3986 45 1 4.1107 -0.5904 -9.3645 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075519029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:49 Heat of formation + Delta-G solvation = -131.065926 kcal Electronic energy + Delta-G solvation = -25229.542879 eV Core-core repulsion = 21372.898520 eV Total energy + Delta-G solvation = -3856.644360 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.67829 -39.60671 -38.76979 -36.66967 -34.77359 -32.70701 -32.41193 -31.95164 -30.62307 -29.01188 -28.51312 -25.58736 -24.80777 -23.21553 -22.07276 -21.69274 -20.70644 -20.41328 -18.09799 -17.76941 -17.09978 -16.71465 -16.55463 -16.11416 -15.51914 -15.42617 -15.32987 -14.96347 -14.88466 -14.40637 -14.15767 -13.80206 -13.66190 -13.59073 -13.38066 -12.99161 -12.77007 -12.39621 -12.30748 -12.27804 -12.05659 -11.90721 -11.78753 -11.61101 -11.34300 -11.23971 -11.16028 -10.98064 -10.57452 -10.48321 -9.95664 -9.83241 -9.50174 -9.45406 -9.02728 -8.96035 -8.47498 -6.88780 -6.26173 -3.97683 2.26072 2.48290 2.78197 2.98422 3.31574 3.36686 3.52736 3.54219 3.67088 3.92831 4.12875 4.28601 4.35719 4.37933 4.47548 4.58758 4.59300 4.66790 4.77336 4.78537 4.98629 5.12647 5.12857 5.15602 5.20044 5.25168 5.27607 5.33019 5.33591 5.44663 5.51032 5.57458 5.68929 5.79212 5.91213 6.00740 6.04198 6.09775 6.20437 6.56052 7.07943 7.60223 7.87636 7.96929 8.44539 8.50086 9.20023 10.83069 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.016506 B = 0.002107 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.987507 B =13285.890044 C =14484.828799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.092 0.908 4 C -0.137 4.137 5 C 0.117 3.883 6 N -0.729 5.729 7 C 0.514 3.486 8 O -0.511 6.511 9 C 0.057 3.943 10 H 0.096 0.904 11 C -0.145 4.145 12 C -0.154 4.154 13 C 0.040 3.960 14 O -0.343 6.343 15 N -0.734 5.734 16 C 0.533 3.467 17 O -0.518 6.518 18 C -0.125 4.125 19 S -0.142 6.142 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.399 0.601 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.064 0.936 42 H 0.398 0.602 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.781 -5.471 33.867 34.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.110 0.890 4 C -0.175 4.175 5 C -0.006 4.006 6 N -0.383 5.383 7 C 0.299 3.701 8 O -0.384 6.384 9 C -0.004 4.004 10 H 0.113 0.887 11 C -0.183 4.183 12 C -0.192 4.192 13 C -0.037 4.037 14 O -0.261 6.261 15 N -0.389 5.389 16 C 0.319 3.681 17 O -0.393 6.393 18 C -0.276 4.276 19 S 0.085 5.915 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.233 0.767 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.082 0.918 42 H 0.233 0.767 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.452 -3.068 32.837 33.071 hybrid contribution -0.033 -1.547 0.144 1.554 sum -2.485 -4.615 32.981 33.395 Atomic orbital electron populations 1.22171 0.94918 1.02175 1.02841 1.20787 0.94201 0.97746 0.83158 0.89034 1.22105 0.94462 1.02147 0.98800 1.21437 0.93591 0.98072 0.87508 1.45885 1.07029 1.57904 1.27520 1.20222 0.82462 0.80844 0.86617 1.90796 1.55119 1.43905 1.48593 1.22867 0.84161 0.99703 0.93696 0.88677 1.22930 0.99218 1.02312 0.93880 1.22948 0.95271 1.02194 0.98769 1.23522 0.99612 0.99471 0.81052 1.89325 1.18229 1.92594 1.25962 1.46091 1.69320 1.13969 1.09508 1.20272 0.76767 0.87215 0.83849 1.90695 1.48404 1.15714 1.84439 1.23289 1.04507 1.03466 0.96311 1.84771 1.87190 1.16842 1.02733 1.22319 1.50450 0.98741 0.95335 0.89395 1.24720 0.93384 0.98304 0.94967 1.69946 1.43437 1.35782 1.02544 0.86725 0.81121 0.84863 0.79084 1.19192 1.19972 1.15944 0.92452 0.91831 0.91458 0.89669 0.90499 0.90717 0.90990 0.76675 0.90037 0.89477 0.90203 0.90007 0.88469 0.91802 0.76740 0.88499 0.88488 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.48 37.16 0.35 -1.12 16 2 C 0.15 1.42 2.57 -67.93 -0.17 1.25 16 3 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 4 C -0.14 -0.82 4.87 -26.73 -0.13 -0.95 16 5 C 0.12 1.01 5.56 -4.04 -0.02 0.99 16 6 N -0.73 -5.14 5.54 -60.29 -0.33 -5.48 16 7 C 0.51 5.45 7.08 -10.98 -0.08 5.37 16 8 O -0.51 -8.38 16.55 -13.66 -0.23 -8.60 16 9 C 0.06 0.43 3.71 -27.11 -0.10 0.33 16 10 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 11 C -0.15 -0.67 6.61 -25.17 -0.17 -0.84 16 12 C -0.15 -0.65 7.09 -25.17 -0.18 -0.83 16 13 C 0.04 0.24 7.63 37.93 0.29 0.53 16 14 O -0.34 -3.67 10.91 -54.45 -0.59 -4.26 16 15 N -0.73 -8.70 4.53 -53.81 -0.24 -8.95 16 16 C 0.53 9.27 7.81 -10.98 -0.09 9.19 16 17 O -0.52 -10.98 15.52 5.56 0.09 -10.89 16 18 C -0.13 -2.44 6.16 36.01 0.22 -2.21 16 19 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 20 C -0.52 -15.23 10.04 30.94 0.31 -14.92 16 21 H 0.09 2.68 8.03 -52.48 -0.42 2.26 16 22 C 0.09 2.82 5.50 -17.43 -0.10 2.72 16 23 N -0.88 -26.92 13.97 55.49 0.78 -26.15 16 24 Si 0.86 22.13 27.74 -169.99 -4.71 17.41 16 25 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.80 7.75 -51.92 -0.40 0.40 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.40 1.32 8.47 -40.82 -0.35 0.97 16 36 H 0.08 0.45 7.86 -51.93 -0.41 0.04 16 37 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 40 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 42 H 0.40 3.68 8.60 -40.82 -0.35 3.33 16 43 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 44 H 0.10 1.79 8.14 -51.91 -0.42 1.37 16 45 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 388.98 15.07 5.86 5.86 Total: -1.00 -39.24 388.98 -8.64 -47.88 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -7.40 Total: -0.70 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: 0.14 Total: -0.49 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.20 Total: -40.57 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.73 Total: -23.75 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.71 Total: 17.41 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -39.24 -8.64 -47.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075519029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.190 kcal (2) G-P(sol) polarization free energy of solvation -39.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds