Wall clock time and date at job start Tue Mar 31 2020 07:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46682 * 2 1 4 4 C 1.52997 * 109.46942 * 119.99483 * 2 1 3 5 5 C 1.53002 * 109.46965 * 185.00140 * 4 2 1 6 6 N 1.46496 * 109.47425 * 180.02562 * 5 4 2 7 7 C 1.34777 * 120.00266 * 180.02562 * 6 5 4 8 8 O 1.21274 * 120.00135 * 0.27234 * 7 6 5 9 9 C 1.50706 * 119.99766 * 179.97438 * 7 6 5 10 10 H 1.08997 * 109.87073 * 304.29548 * 9 7 6 11 11 C 1.54101 * 109.87684 * 65.30594 * 9 7 6 12 12 C 1.54815 * 104.18660 * 121.45183 * 11 9 7 13 13 C 1.54996 * 102.09131 * 20.87935 * 12 11 9 14 14 O 1.43742 * 109.87337 * 183.28848 * 9 7 6 15 15 N 1.46495 * 109.47350 * 239.99991 * 2 1 3 16 16 C 1.34780 * 120.00200 * 84.99740 * 15 2 1 17 17 O 1.21285 * 120.00038 * 359.97438 * 16 15 2 18 18 C 1.50695 * 120.00328 * 179.97438 * 16 15 2 19 19 S 1.81004 * 109.47398 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99967 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00438 * 0.02562 * 20 19 18 22 22 C 1.38804 * 119.99934 * 179.97438 * 20 19 18 23 23 N 1.31627 * 119.99734 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99944 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47220 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46788 * 120.00385 * 24 22 20 27 27 H 1.48503 * 109.46901 * 239.99964 * 24 22 20 28 28 H 1.09000 * 109.46682 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47407 * 299.99823 * 1 2 3 30 30 H 1.09002 * 109.47069 * 60.00217 * 1 2 3 31 31 H 1.09000 * 109.47058 * 65.01040 * 4 2 1 32 32 H 1.08987 * 109.47609 * 305.00223 * 4 2 1 33 33 H 1.09004 * 109.46930 * 60.00393 * 5 4 2 34 34 H 1.09000 * 109.47312 * 300.00337 * 5 4 2 35 35 H 0.96999 * 119.99691 * 359.97438 * 6 5 4 36 36 H 1.09000 * 110.48667 * 240.12620 * 11 9 7 37 37 H 1.08994 * 110.48801 * 2.77508 * 11 9 7 38 38 H 1.09005 * 110.90623 * 139.07387 * 12 11 9 39 39 H 1.08997 * 110.90532 * 262.64618 * 12 11 9 40 40 H 1.08998 * 110.62060 * 81.47738 * 13 12 11 41 41 H 1.09000 * 110.61331 * 204.31629 * 13 12 11 42 42 H 0.97001 * 120.00270 * 265.00137 * 15 2 1 43 43 H 1.08996 * 109.47174 * 300.00147 * 18 16 15 44 44 H 1.09005 * 109.47203 * 59.99880 * 18 16 15 45 45 H 0.97008 * 120.00034 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3138 6 7 4.0532 -1.3041 2.5096 7 6 5.3741 -1.3395 2.7753 8 8 6.1579 -0.7951 2.0270 9 6 5.8764 -2.0499 4.0058 10 1 5.3875 -1.6459 4.8923 11 6 5.5911 -3.5600 3.8922 12 6 6.9875 -4.2192 4.0016 13 6 7.8177 -3.1084 4.6939 14 8 7.3004 -1.8881 4.1164 15 7 2.0184 -0.6906 -1.1961 16 6 2.1471 -0.0183 -2.3571 17 8 1.8582 1.1584 -2.4118 18 6 2.6500 -0.7285 -3.5874 19 16 2.7100 0.4343 -4.9733 20 6 3.3133 -0.6309 -6.2405 21 1 3.5228 -1.6673 -6.0205 22 6 3.5183 -0.1383 -7.5219 23 7 3.2625 1.1247 -7.7902 24 14 4.1586 -1.2674 -8.8652 25 1 4.3660 -2.6291 -8.3102 26 1 3.1706 -1.3297 -9.9721 27 1 5.4477 -0.7411 -9.3814 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.7517 -1.7714 1.2056 32 1 1.6054 -0.2617 2.1369 33 1 3.8531 0.4372 1.3574 34 1 3.9995 -1.0726 0.4261 35 1 3.4259 -1.7355 3.1106 36 1 4.9487 -3.8893 4.7089 37 1 5.1346 -3.7906 2.9297 38 1 6.9468 -5.1165 4.6193 39 1 7.3886 -4.4469 3.0140 40 1 7.6527 -3.1209 5.7712 41 1 8.8777 -3.2242 4.4678 42 1 2.2491 -1.6317 -1.1526 43 1 3.6493 -1.1202 -3.3978 44 1 1.9779 -1.5509 -3.8325 45 1 3.4054 1.4689 -8.6858 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075519030.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:53 Heat of formation + Delta-G solvation = -131.318546 kcal Electronic energy + Delta-G solvation = -25287.542202 eV Core-core repulsion = 21430.886888 eV Total energy + Delta-G solvation = -3856.655314 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.68305 -39.49917 -38.68295 -36.58449 -34.71549 -32.70001 -32.40565 -31.86147 -30.59034 -28.92946 -28.40992 -25.46440 -24.65829 -23.10570 -22.23449 -21.61412 -20.62037 -20.32292 -18.05708 -17.76272 -17.05638 -16.63931 -16.54617 -16.00472 -15.61649 -15.41503 -15.00335 -14.83393 -14.78140 -14.23397 -14.17568 -13.88538 -13.76926 -13.52555 -13.21715 -12.90444 -12.63783 -12.31823 -12.24245 -12.14833 -11.93968 -11.82598 -11.72503 -11.53747 -11.44634 -11.09501 -11.04706 -10.99366 -10.73379 -10.55102 -9.80270 -9.77781 -9.41031 -9.36937 -9.05604 -8.90886 -8.20599 -6.47140 -6.19495 -3.89587 2.29893 2.54643 3.04747 3.11395 3.23469 3.29956 3.34672 3.52844 3.72654 3.93368 4.19422 4.22595 4.27273 4.42742 4.47445 4.65052 4.66675 4.72256 4.83987 5.03551 5.15717 5.15956 5.16735 5.21313 5.24889 5.30394 5.33684 5.34889 5.51305 5.54879 5.60782 5.67467 5.74168 5.91377 5.99907 6.05549 6.15475 6.17564 6.27569 6.65680 7.12570 7.62198 7.70952 7.92232 8.37768 8.63201 9.26013 10.88002 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.012427 B = 0.002243 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.555440 B =12482.823433 C =14092.295395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.092 0.908 4 C -0.136 4.136 5 C 0.117 3.883 6 N -0.730 5.730 7 C 0.508 3.492 8 O -0.512 6.512 9 C 0.060 3.940 10 H 0.094 0.906 11 C -0.147 4.147 12 C -0.155 4.155 13 C 0.043 3.957 14 O -0.347 6.347 15 N -0.736 5.736 16 C 0.534 3.466 17 O -0.516 6.516 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.534 4.534 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.399 0.601 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.098 0.902 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.474 -12.944 29.757 32.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.110 0.890 4 C -0.175 4.175 5 C -0.006 4.006 6 N -0.385 5.385 7 C 0.293 3.707 8 O -0.385 6.385 9 C -0.001 4.001 10 H 0.112 0.888 11 C -0.185 4.185 12 C -0.192 4.192 13 C -0.033 4.033 14 O -0.265 6.265 15 N -0.391 5.391 16 C 0.320 3.680 17 O -0.390 6.390 18 C -0.305 4.305 19 S 0.166 5.834 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.137 4.137 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.233 0.767 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.116 0.884 42 H 0.230 0.770 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.233 -10.216 28.905 30.658 hybrid contribution 0.373 -2.961 -0.410 3.012 sum 0.140 -13.177 28.495 31.394 Atomic orbital electron populations 1.22171 0.94994 1.02074 1.02848 1.20776 0.94161 0.97790 0.83208 0.89037 1.22100 0.94457 1.02043 0.98866 1.21436 0.93604 0.98131 0.87445 1.45919 1.07099 1.57869 1.27584 1.20488 0.82428 0.80783 0.87046 1.90784 1.55161 1.43681 1.48870 1.22627 0.85077 0.95933 0.96482 0.88802 1.22956 0.98911 0.92616 1.04061 1.23150 0.94562 0.98973 1.02550 1.23688 0.99501 0.82989 0.97164 1.89084 1.17415 1.36615 1.83346 1.46124 1.69536 1.13847 1.09580 1.20298 0.76719 0.87219 0.83760 1.90701 1.48187 1.15727 1.84375 1.23536 1.03667 1.04845 0.98428 1.85391 1.86244 1.12990 0.98740 1.22906 1.50863 0.98163 0.96313 0.90909 1.24999 0.95126 0.95549 0.97986 1.70030 1.45647 1.13215 1.21390 0.86114 0.78529 0.80132 0.80697 1.19637 1.20593 1.20553 0.92555 0.91872 0.91418 0.90624 0.89709 0.90960 0.90801 0.76724 0.89439 0.89786 0.89627 0.90002 0.91751 0.88366 0.76958 0.89244 0.89293 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.48 37.16 0.35 -1.23 16 2 C 0.15 1.52 2.57 -67.93 -0.17 1.35 16 3 H 0.09 1.17 7.58 -51.93 -0.39 0.78 16 4 C -0.14 -0.89 4.87 -26.73 -0.13 -1.02 16 5 C 0.12 1.07 5.56 -4.04 -0.02 1.05 16 6 N -0.73 -5.42 5.53 -60.29 -0.33 -5.76 16 7 C 0.51 5.51 6.95 -10.98 -0.08 5.44 16 8 O -0.51 -8.51 16.53 -14.01 -0.23 -8.75 16 9 C 0.06 0.47 3.84 -27.31 -0.10 0.36 16 10 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 11 C -0.15 -0.71 6.62 -25.20 -0.17 -0.88 16 12 C -0.15 -0.78 7.16 -24.72 -0.18 -0.96 16 13 C 0.04 0.27 7.72 38.21 0.29 0.57 16 14 O -0.35 -3.73 10.75 -54.81 -0.59 -4.32 16 15 N -0.74 -9.26 4.53 -53.81 -0.24 -9.50 16 16 C 0.53 9.82 7.81 -10.99 -0.09 9.74 16 17 O -0.52 -11.58 15.53 5.55 0.09 -11.50 16 18 C -0.15 -3.13 6.16 36.00 0.22 -2.91 16 19 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 20 C -0.53 -15.42 9.50 30.94 0.29 -15.13 16 21 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.48 13.22 55.49 0.73 -25.75 16 24 Si 0.92 21.71 29.55 -169.99 -5.02 16.69 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.41 8.14 -51.94 -0.42 -0.01 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.82 7.75 -51.93 -0.40 0.42 16 35 H 0.40 1.47 8.47 -40.82 -0.35 1.12 16 36 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.08 0.43 7.69 -51.93 -0.40 0.04 16 38 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.40 3.90 8.60 -40.82 -0.35 3.54 16 43 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 44 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 45 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 391.46 15.07 5.90 5.90 Total: -1.00 -39.49 391.46 -9.14 -48.63 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -7.36 Total: -0.17 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 0.13 Total: -1.62 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.16 Total: -41.01 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.73 Total: -24.56 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -39.49 -9.14 -48.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075519030.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.688 kcal (2) G-P(sol) polarization free energy of solvation -39.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds