Wall clock time and date at job start Tue Mar 31 2020 07:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47118 * 2 1 4 4 C 1.52997 * 109.47352 * 120.00071 * 2 1 3 5 5 C 1.52989 * 109.47297 * 184.99881 * 4 2 1 6 6 N 1.46504 * 109.47327 * 179.97438 * 5 4 2 7 7 C 1.34780 * 119.99959 * 179.97438 * 6 5 4 8 8 O 1.21275 * 120.00325 * 0.02562 * 7 6 5 9 9 C 1.50707 * 119.99437 * 180.02562 * 7 6 5 10 10 S 1.81004 * 109.46721 * 180.02562 * 9 7 6 11 11 C 1.76198 * 99.99763 * 180.02562 * 10 9 7 12 12 H 1.07997 * 120.00160 * 359.97438 * 11 10 9 13 13 C 1.38800 * 119.99917 * 180.02562 * 11 10 9 14 14 N 1.31631 * 119.99832 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00099 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47141 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47050 * 119.99707 * 15 13 11 18 18 H 1.48497 * 109.47292 * 239.99557 * 15 13 11 19 19 N 1.46504 * 109.47020 * 240.00097 * 2 1 3 20 20 C 1.34779 * 119.99537 * 85.00138 * 19 2 1 21 21 O 1.21277 * 120.00464 * 359.97438 * 20 19 2 22 22 C 1.50701 * 119.99681 * 179.97438 * 20 19 2 23 23 H 1.09008 * 111.02193 * 55.77696 * 22 20 19 24 24 C 1.55305 * 111.12588 * 179.97438 * 22 20 19 25 25 C 1.54387 * 102.24962 * 152.05221 * 24 22 20 26 26 O 1.43236 * 107.59079 * 338.64624 * 25 24 22 27 27 C 1.43643 * 109.97149 * 358.28683 * 26 25 24 28 28 H 1.08998 * 109.47123 * 59.99734 * 1 2 3 29 29 H 1.08997 * 109.47118 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47241 * 299.99645 * 1 2 3 31 31 H 1.09000 * 109.47186 * 305.00247 * 4 2 1 32 32 H 1.09011 * 109.46906 * 64.99845 * 4 2 1 33 33 H 1.09000 * 109.47301 * 300.00295 * 5 4 2 34 34 H 1.09005 * 109.47345 * 60.00509 * 5 4 2 35 35 H 0.97001 * 119.99498 * 0.02562 * 6 5 4 36 36 H 1.08998 * 109.46844 * 300.00126 * 9 7 6 37 37 H 1.08998 * 109.47195 * 60.00373 * 9 7 6 38 38 H 0.97008 * 119.99808 * 180.02562 * 14 13 11 39 39 H 0.96993 * 120.00160 * 264.99799 * 19 2 1 40 40 H 1.08998 * 110.84418 * 33.86708 * 24 22 20 41 41 H 1.09003 * 110.84733 * 270.24118 * 24 22 20 42 42 H 1.09001 * 109.82619 * 98.16119 * 25 24 22 43 43 H 1.09002 * 109.82943 * 219.12673 * 25 24 22 44 44 H 1.08997 * 110.30752 * 143.34329 * 27 26 25 45 45 H 1.09001 * 110.31193 * 265.41926 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5647 -0.6133 1.3136 6 7 4.0531 -1.3034 2.5101 7 6 5.3741 -1.3395 2.7752 8 8 6.1584 -0.8004 2.0237 9 6 5.8764 -2.0500 4.0058 10 16 7.6803 -1.9221 4.0821 11 6 7.9873 -2.8121 5.5714 12 1 7.1636 -3.2348 6.1275 13 6 9.2877 -2.9689 6.0307 14 7 10.2916 -2.4532 5.3532 15 14 9.6132 -3.9118 7.6100 16 1 8.3256 -4.3865 8.1775 17 1 10.4864 -5.0774 7.3197 18 1 10.2864 -3.0207 8.5887 19 7 2.0183 -0.6906 -1.1962 20 6 2.1470 -0.0181 -2.3571 21 8 1.8582 1.1585 -2.4117 22 6 2.6499 -0.7284 -3.5875 23 1 2.0374 -1.6015 -3.8128 24 6 2.7167 0.2364 -4.8027 25 6 3.8494 -0.3821 -5.6501 26 8 4.6465 -1.1944 -4.7804 27 6 4.1424 -1.1164 -3.4375 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6054 -0.2618 2.1369 32 1 1.7516 -1.7716 1.2055 33 1 3.9994 -1.0728 0.4259 34 1 3.8532 0.4370 1.3574 35 1 3.4258 -1.7349 3.1110 36 1 5.4420 -1.5902 4.8935 37 1 5.5877 -3.1001 3.9623 38 1 11.2005 -2.5631 5.6739 39 1 2.2490 -1.6317 -1.1527 40 1 2.9780 1.2452 -4.4831 41 1 1.7754 0.2339 -5.3523 42 1 3.4241 -0.9967 -6.4435 43 1 4.4623 0.4091 -6.0819 44 1 4.2341 -2.0830 -2.9423 45 1 4.6790 -0.3517 -2.8758 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075675588.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:15 Heat of formation + Delta-G solvation = -135.378195 kcal Electronic energy + Delta-G solvation = -25364.363340 eV Core-core repulsion = 21507.531986 eV Total energy + Delta-G solvation = -3856.831354 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.80141 -39.34772 -38.90720 -36.88176 -34.50792 -32.95634 -32.44295 -31.78513 -30.22047 -29.49189 -28.18042 -25.51207 -24.43226 -23.36845 -22.59508 -21.35742 -20.63061 -20.30435 -18.07669 -17.82450 -17.03919 -16.82128 -16.27672 -16.04577 -15.65203 -15.46726 -15.35055 -14.81885 -14.65780 -14.24666 -14.08542 -13.91785 -13.87268 -13.80080 -13.25512 -12.95144 -12.74517 -12.60043 -12.38979 -12.22050 -11.90323 -11.75565 -11.69983 -11.53983 -11.37400 -11.31907 -11.08260 -11.03521 -10.76959 -10.20733 -9.91768 -9.82404 -9.56841 -9.41523 -9.09405 -8.94061 -8.24842 -6.51766 -6.23181 -3.93896 2.18890 2.66414 2.99114 3.06333 3.20449 3.26765 3.31049 3.46832 3.65499 3.84629 4.18773 4.28332 4.41472 4.41848 4.48770 4.64224 4.69575 4.73004 4.79594 5.00752 5.01867 5.12081 5.18099 5.22223 5.24843 5.30451 5.32980 5.41932 5.45523 5.53040 5.59502 5.67967 5.69535 5.78137 5.86396 5.87521 6.08676 6.10920 6.54802 6.54926 7.04740 7.58304 7.65149 7.79305 8.33882 8.57379 9.22225 10.84279 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.016454 B = 0.002108 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.321247 B =13282.393229 C =14642.938965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.094 0.906 4 C -0.140 4.140 5 C 0.121 3.879 6 N -0.741 5.741 7 C 0.531 3.469 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 N -0.724 5.724 20 C 0.529 3.471 21 O -0.533 6.533 22 C -0.150 4.150 23 H 0.113 0.887 24 C -0.136 4.136 25 C 0.049 3.951 26 O -0.378 6.378 27 C 0.065 3.935 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.268 0.732 39 H 0.402 0.598 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.094 0.906 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.095 1.559 -16.056 28.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.112 0.888 4 C -0.178 4.178 5 C -0.003 4.003 6 N -0.396 5.396 7 C 0.317 3.683 8 O -0.390 6.390 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.137 4.137 14 N -0.502 5.502 15 Si 0.746 3.254 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 N -0.376 5.376 20 C 0.314 3.686 21 O -0.409 6.409 22 C -0.172 4.172 23 H 0.131 0.869 24 C -0.174 4.174 25 C -0.027 4.027 26 O -0.297 6.297 27 C -0.012 4.012 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.232 0.768 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.237 0.763 40 H 0.111 0.889 41 H 0.105 0.895 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.112 0.888 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.611 3.245 -17.431 27.954 hybrid contribution -1.152 -1.822 2.301 3.153 sum -22.764 1.423 -15.130 27.370 Atomic orbital electron populations 1.22159 0.94713 1.02288 1.02858 1.20921 0.94203 0.97811 0.83102 0.88825 1.22131 0.95503 1.01956 0.98217 1.21253 0.92547 0.98051 0.88497 1.46003 1.07850 1.58665 1.27045 1.20332 0.81459 0.79716 0.86835 1.90712 1.54933 1.44287 1.49042 1.23530 1.06912 1.02518 0.97437 1.85430 0.92117 1.72672 1.33205 1.22901 0.95482 1.40078 1.09877 0.90876 1.25004 0.95067 0.95664 0.97923 1.70031 0.99367 1.42587 1.38249 0.86110 0.78395 0.79268 0.81672 1.19630 1.20551 1.20564 1.46143 1.67525 1.14238 1.09690 1.20137 0.77250 0.87098 0.84085 1.90718 1.49546 1.15784 1.84825 1.23084 0.99149 1.00521 0.94432 0.86934 1.23033 0.99853 1.00190 0.94341 1.23194 0.91965 0.94345 0.93232 1.88453 1.54525 1.68921 1.17810 1.23327 0.89939 1.02583 0.85355 0.91943 0.92316 0.91313 0.89338 0.90476 0.91670 0.91545 0.76837 0.89234 0.89237 0.92213 0.76340 0.88860 0.89521 0.90987 0.90941 0.88772 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 9.48 37.16 0.35 -0.62 16 2 C 0.14 1.00 2.57 -67.93 -0.17 0.82 16 3 H 0.09 0.85 7.58 -51.93 -0.39 0.45 16 4 C -0.14 -0.85 4.87 -26.74 -0.13 -0.98 16 5 C 0.12 1.24 5.56 -4.05 -0.02 1.21 16 6 N -0.74 -8.96 5.56 -60.29 -0.33 -9.30 16 7 C 0.53 9.57 7.85 -10.98 -0.09 9.48 16 8 O -0.52 -11.56 15.86 5.56 0.09 -11.47 16 9 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 10 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 11 C -0.54 -15.13 9.50 30.94 0.29 -14.84 16 12 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 13 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 14 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 15 Si 0.92 21.28 29.55 -169.99 -5.02 16.25 16 16 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 N -0.72 -4.82 4.53 -53.81 -0.24 -5.07 16 20 C 0.53 4.66 7.12 -10.98 -0.08 4.58 16 21 O -0.53 -6.65 15.37 5.56 0.09 -6.56 16 22 C -0.15 -1.05 3.49 -89.52 -0.31 -1.36 16 23 H 0.11 0.55 8.14 -51.92 -0.42 0.13 16 24 C -0.14 -0.99 6.18 -24.78 -0.15 -1.14 16 25 C 0.05 0.37 7.79 37.88 0.30 0.66 16 26 O -0.38 -3.89 11.36 -35.23 -0.40 -4.29 16 27 C 0.06 0.55 7.25 38.19 0.28 0.82 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 33 H 0.06 0.71 7.75 -51.93 -0.40 0.31 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.40 3.54 8.47 -40.82 -0.35 3.19 16 36 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 37 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 38 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.40 1.85 8.60 -40.82 -0.35 1.49 16 40 H 0.09 0.83 7.36 -51.93 -0.38 0.45 16 41 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 0.68 8.02 -51.93 -0.42 0.26 16 LS Contribution 390.39 15.07 5.88 5.88 Total: -1.00 -37.23 390.39 -8.37 -45.60 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -7.33 Total: 0.33 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 0.39 Total: -2.17 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.15 Total: -39.72 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.23 Total: -22.32 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.23 -8.37 -45.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675588.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.775 kcal (2) G-P(sol) polarization free energy of solvation -37.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds