Wall clock time and date at job start Tue Mar 31 2020 07:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47638 * 2 1 4 4 C 1.53001 * 109.47506 * 120.00075 * 2 1 3 5 5 C 1.52996 * 109.47486 * 184.99569 * 4 2 1 6 6 N 1.46499 * 109.47369 * 180.02562 * 5 4 2 7 7 C 1.34776 * 120.00217 * 179.97438 * 6 5 4 8 8 O 1.21282 * 119.99940 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00035 * 179.97438 * 7 6 5 10 10 S 1.81000 * 109.47349 * 180.02562 * 9 7 6 11 11 C 1.76194 * 100.00068 * 180.02562 * 10 9 7 12 12 H 1.08006 * 120.00457 * 359.97438 * 11 10 9 13 13 C 1.38801 * 120.00163 * 180.02562 * 11 10 9 14 14 N 1.31640 * 119.99650 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 120.00461 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46966 * 89.99788 * 15 13 11 17 17 H 1.48500 * 109.47223 * 209.99878 * 15 13 11 18 18 H 1.48501 * 109.47335 * 329.99952 * 15 13 11 19 19 N 1.46508 * 109.47092 * 240.00064 * 2 1 3 20 20 C 1.34772 * 119.99666 * 84.99848 * 19 2 1 21 21 O 1.21285 * 120.00367 * 0.02562 * 20 19 2 22 22 C 1.50699 * 119.99809 * 180.02562 * 20 19 2 23 23 H 1.09006 * 110.45558 * 302.60367 * 22 20 19 24 24 C 1.54508 * 110.51348 * 180.02562 * 22 20 19 25 25 C 1.54482 * 104.06122 * 241.35571 * 24 22 20 26 26 O 1.44424 * 104.80347 * 23.97674 * 25 24 22 27 27 C 1.44425 * 105.27459 * 319.48746 * 26 25 24 28 28 H 1.08993 * 109.47376 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46634 * 299.99985 * 1 2 3 30 30 H 1.09000 * 109.47090 * 59.99723 * 1 2 3 31 31 H 1.09001 * 109.46652 * 64.99787 * 4 2 1 32 32 H 1.09000 * 109.47437 * 305.00301 * 4 2 1 33 33 H 1.09001 * 109.46997 * 60.00430 * 5 4 2 34 34 H 1.09004 * 109.47298 * 300.00287 * 5 4 2 35 35 H 0.97005 * 119.99377 * 359.97438 * 6 5 4 36 36 H 1.09001 * 109.47122 * 60.00223 * 9 7 6 37 37 H 1.09004 * 109.47371 * 300.00514 * 9 7 6 38 38 H 0.97001 * 119.99781 * 180.02562 * 14 13 11 39 39 H 0.96997 * 119.99658 * 265.00016 * 19 2 1 40 40 H 1.09007 * 110.51082 * 359.97438 * 24 22 20 41 41 H 1.08993 * 110.51873 * 122.70924 * 24 22 20 42 42 H 1.09003 * 110.37318 * 142.80518 * 25 24 22 43 43 H 1.09003 * 110.36837 * 265.14583 * 25 24 22 44 44 H 1.09006 * 110.37276 * 281.68459 * 27 26 25 45 45 H 1.08994 * 110.37230 * 159.34279 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6134 1.3136 6 7 4.0533 -1.3045 2.5094 7 6 5.3743 -1.3409 2.7744 8 8 6.1586 -0.8011 2.0232 9 6 5.8766 -2.0514 4.0048 10 16 7.6805 -1.9239 4.0810 11 6 7.9876 -2.8139 5.5703 12 1 7.1639 -3.2365 6.1265 13 6 9.2880 -2.9710 6.0294 14 7 10.2920 -2.4554 5.3518 15 14 9.6135 -3.9139 7.6087 16 1 9.8150 -5.3512 7.2944 17 1 10.8320 -3.3751 8.2647 18 1 8.4525 -3.7650 8.5224 19 7 2.0184 -0.6906 -1.1962 20 6 2.1470 -0.0182 -2.3571 21 8 1.8590 1.1587 -2.4115 22 6 2.6488 -0.7287 -3.5878 23 1 3.6290 -1.1677 -3.4012 24 6 2.7110 0.2437 -4.7868 25 6 1.7352 -0.3675 -5.8168 26 8 0.8223 -1.1653 -5.0319 27 6 1.6429 -1.8124 -4.0351 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 1.7517 -1.7715 1.2055 32 1 1.6055 -0.2618 2.1370 33 1 3.8533 0.4369 1.3573 34 1 3.9995 -1.0729 0.4258 35 1 3.4259 -1.7359 3.1104 36 1 5.5878 -3.1015 3.9614 37 1 5.4424 -1.5916 4.8927 38 1 11.2008 -2.5655 5.6724 39 1 2.2490 -1.6318 -1.1526 40 1 2.3784 1.2383 -4.4896 41 1 3.7210 0.2834 -5.1945 42 1 1.1954 0.4204 -6.3421 43 1 2.2756 -0.9957 -6.5250 44 1 2.1691 -2.6622 -4.4701 45 1 1.0322 -2.1345 -3.1917 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075675589.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:20 Heat of formation + Delta-G solvation = -134.299309 kcal Electronic energy + Delta-G solvation = -25266.367631 eV Core-core repulsion = 21409.583061 eV Total energy + Delta-G solvation = -3856.784570 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.85831 -39.33903 -38.82326 -36.82524 -34.49952 -32.91092 -32.45120 -31.78222 -30.19017 -29.41245 -28.16721 -25.51870 -24.43877 -23.52732 -22.66459 -21.31352 -20.48364 -20.26999 -17.97567 -17.75226 -17.04786 -16.72000 -16.33638 -16.13540 -15.93695 -15.49626 -15.26457 -14.84240 -14.82106 -14.29001 -14.18389 -13.98460 -13.78810 -13.29268 -13.13386 -12.98192 -12.63590 -12.50744 -12.28455 -12.18014 -11.91002 -11.82408 -11.65904 -11.56605 -11.36392 -11.29008 -11.08490 -11.04793 -10.78228 -10.45499 -9.95683 -9.84295 -9.52933 -9.40478 -9.09503 -8.94014 -8.26505 -6.52893 -6.24044 -3.94884 2.27889 2.73966 2.98681 3.05606 3.20391 3.25854 3.29700 3.51090 3.65202 3.95426 4.18068 4.25190 4.38563 4.43510 4.53095 4.66316 4.70047 4.75881 4.94849 5.02761 5.05944 5.09643 5.11115 5.14510 5.19252 5.27044 5.30858 5.35182 5.42427 5.56165 5.59434 5.70527 5.76764 5.83345 5.85821 5.89447 6.10126 6.14491 6.28671 6.54853 7.11154 7.57065 7.65007 7.87311 8.32724 8.56753 9.21226 10.83356 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.022411 B = 0.001870 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.102567 B =14971.104893 C =15636.462186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.093 0.907 4 C -0.140 4.140 5 C 0.121 3.879 6 N -0.740 5.740 7 C 0.531 3.469 8 O -0.517 6.517 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.536 4.536 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 N -0.725 5.725 20 C 0.527 3.473 21 O -0.532 6.532 22 C -0.150 4.150 23 H 0.115 0.885 24 C -0.148 4.148 25 C 0.045 3.955 26 O -0.372 6.372 27 C 0.057 3.943 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.268 0.732 39 H 0.401 0.599 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.807 0.752 -16.674 27.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.111 0.889 4 C -0.178 4.178 5 C -0.003 4.003 6 N -0.395 5.395 7 C 0.317 3.683 8 O -0.391 6.391 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.746 3.254 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 N -0.378 5.378 20 C 0.313 3.687 21 O -0.408 6.408 22 C -0.172 4.172 23 H 0.133 0.867 24 C -0.185 4.185 25 C -0.031 4.031 26 O -0.290 6.290 27 C -0.021 4.021 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.232 0.768 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.235 0.765 40 H 0.119 0.881 41 H 0.102 0.898 42 H 0.112 0.888 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.733 2.542 -18.008 27.579 hybrid contribution -0.549 -1.954 2.300 3.067 sum -21.282 0.589 -15.708 26.458 Atomic orbital electron populations 1.22162 0.94711 1.02298 1.02879 1.20908 0.94211 0.97760 0.83067 0.88885 1.22130 0.95437 1.01946 0.98268 1.21253 0.92601 0.98015 0.88443 1.46006 1.07832 1.58594 1.27102 1.20329 0.81472 0.79711 0.86816 1.90710 1.54964 1.44329 1.49090 1.23532 1.06899 1.02525 0.97457 1.85411 0.92129 1.72680 1.33195 1.22864 0.95473 1.40146 1.09922 0.90919 1.25004 0.95058 0.95647 0.97931 1.70022 0.99384 1.42491 1.38361 0.86158 0.77982 0.79601 0.81696 1.20269 1.20736 1.19700 1.46091 1.67837 1.14137 1.09705 1.20256 0.77025 0.87199 0.84233 1.90684 1.49512 1.15989 1.84594 1.22760 1.01718 0.98026 0.94655 0.86731 1.23014 1.00940 1.01127 0.93460 1.23477 0.91382 0.94435 0.93854 1.89160 1.31017 1.63086 1.45747 1.23389 0.92277 0.94020 0.92407 0.92335 0.91371 0.91847 0.90507 0.89364 0.91551 0.91694 0.76827 0.89235 0.89212 0.92166 0.76474 0.88096 0.89780 0.88769 0.92016 0.90878 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 9.48 37.16 0.35 -0.73 16 2 C 0.15 1.08 2.57 -67.93 -0.17 0.90 16 3 H 0.09 0.89 7.58 -51.93 -0.39 0.50 16 4 C -0.14 -0.89 4.87 -26.73 -0.13 -1.02 16 5 C 0.12 1.27 5.56 -4.04 -0.02 1.24 16 6 N -0.74 -9.04 5.56 -60.30 -0.33 -9.38 16 7 C 0.53 9.59 7.85 -10.99 -0.09 9.50 16 8 O -0.52 -11.59 15.86 5.56 0.09 -11.50 16 9 C -0.15 -3.01 6.16 36.00 0.22 -2.79 16 10 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 11 C -0.54 -15.11 9.50 30.94 0.29 -14.82 16 12 H 0.07 1.93 7.80 -52.48 -0.41 1.53 16 13 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 14 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 15 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 N -0.73 -5.22 4.34 -53.80 -0.23 -5.45 16 20 C 0.53 5.02 7.03 -10.99 -0.08 4.94 16 21 O -0.53 -7.10 14.94 5.55 0.08 -7.02 16 22 C -0.15 -1.06 3.51 -90.20 -0.32 -1.38 16 23 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 24 C -0.15 -1.09 6.67 -25.16 -0.17 -1.26 16 25 C 0.05 0.31 7.63 37.94 0.29 0.60 16 26 O -0.37 -3.41 11.65 -35.23 -0.41 -3.82 16 27 C 0.06 0.36 7.17 37.93 0.27 0.63 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.73 7.75 -51.93 -0.40 0.32 16 35 H 0.40 3.58 8.47 -40.82 -0.35 3.24 16 36 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 37 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 38 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.40 1.97 8.60 -40.82 -0.35 1.62 16 40 H 0.10 0.97 6.50 -51.93 -0.34 0.63 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.09 0.52 7.72 -51.93 -0.40 0.12 16 LS Contribution 389.11 15.07 5.86 5.86 Total: -1.00 -37.50 389.11 -8.36 -45.86 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -7.27 Total: 0.59 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 0.36 Total: -2.22 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.17 Total: -40.10 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.24 Total: -22.34 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.50 -8.36 -45.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675589.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.439 kcal (2) G-P(sol) polarization free energy of solvation -37.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds