Wall clock time and date at job start Tue Mar 31 2020 07:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.52999 * 109.47451 * 184.99880 * 4 2 1 6 6 N 1.46500 * 109.47120 * 180.02562 * 5 4 2 7 7 C 1.34777 * 120.00097 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99903 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00178 * 179.97438 * 7 6 5 10 10 S 1.80995 * 109.47230 * 179.97438 * 9 7 6 11 11 C 1.76197 * 100.00178 * 180.02562 * 10 9 7 12 12 H 1.08000 * 120.00117 * 359.97438 * 11 10 9 13 13 C 1.38801 * 120.00090 * 180.02562 * 11 10 9 14 14 N 1.31632 * 120.00171 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 119.99957 * 359.97438 * 13 11 10 16 16 H 1.48492 * 109.47225 * 90.00340 * 15 13 11 17 17 H 1.48502 * 109.46919 * 210.00471 * 15 13 11 18 18 H 1.48502 * 109.47184 * 329.99902 * 15 13 11 19 19 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 20 20 C 1.34780 * 119.99910 * 85.00011 * 19 2 1 21 21 O 1.21281 * 119.99723 * 0.02562 * 20 19 2 22 22 C 1.50693 * 120.00182 * 180.02562 * 20 19 2 23 23 H 1.08994 * 110.33235 * 57.24280 * 22 20 19 24 24 C 1.54490 * 110.37037 * 295.00014 * 22 20 19 25 25 C 1.54506 * 104.05904 * 217.19026 * 24 22 20 26 26 C 1.54476 * 104.06866 * 359.97438 * 25 24 22 27 27 O 1.44423 * 110.37500 * 179.61864 * 22 20 19 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 31 31 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 32 32 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 33 33 H 1.08996 * 109.47443 * 300.00108 * 5 4 2 34 34 H 1.09000 * 109.46961 * 60.00367 * 5 4 2 35 35 H 0.97004 * 120.00316 * 359.97438 * 6 5 4 36 36 H 1.09000 * 109.47343 * 299.99792 * 9 7 6 37 37 H 1.09000 * 109.46969 * 59.99899 * 9 7 6 38 38 H 0.96989 * 120.00269 * 179.97438 * 14 13 11 39 39 H 0.96994 * 119.99975 * 265.00388 * 19 2 1 40 40 H 1.08999 * 110.50912 * 335.83272 * 24 22 20 41 41 H 1.08996 * 110.50948 * 98.54293 * 24 22 20 42 42 H 1.09009 * 110.50828 * 118.64456 * 25 24 22 43 43 H 1.08997 * 110.51152 * 241.34654 * 25 24 22 44 44 H 1.09002 * 110.37544 * 142.80452 * 26 25 24 45 45 H 1.08993 * 110.37543 * 265.03743 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 7 4.0532 -1.3043 2.5096 7 6 5.3740 -1.3398 2.7753 8 8 6.1583 -0.7992 2.0246 9 6 5.8764 -2.0501 4.0058 10 16 7.6802 -1.9226 4.0819 11 6 7.9873 -2.8125 5.5713 12 1 7.1636 -3.2351 6.1275 13 6 9.2877 -2.9695 6.0305 14 7 9.5171 -3.6339 7.1434 15 14 10.7124 -2.2379 5.0689 16 1 10.9746 -0.8567 5.5468 17 1 11.9253 -3.0704 5.2712 18 1 10.3697 -2.2053 3.6244 19 7 2.0184 -0.6906 -1.1961 20 6 2.1471 -0.0183 -2.3571 21 8 1.8591 1.1586 -2.4115 22 6 2.6490 -0.7288 -3.5877 23 1 2.0131 -1.5837 -3.8172 24 6 4.1112 -1.1850 -3.3865 25 6 4.7634 -0.9766 -4.7716 26 6 3.6180 -0.4198 -5.6459 27 8 2.6970 0.1804 -4.7088 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.6054 -0.2617 2.1370 32 1 1.7517 -1.7714 1.2056 33 1 3.9995 -1.0728 0.4261 34 1 3.8532 0.4370 1.3574 35 1 3.4259 -1.7358 3.1107 36 1 5.4415 -1.5908 4.8935 37 1 5.5883 -3.1005 3.9619 38 1 10.4258 -3.7439 7.4641 39 1 2.2490 -1.6317 -1.1525 40 1 4.6040 -0.5675 -2.6355 41 1 4.1475 -2.2364 -3.1015 42 1 5.5787 -0.2560 -4.7053 43 1 5.1222 -1.9249 -5.1713 44 1 3.9992 0.3321 -6.3370 45 1 3.1326 -1.2269 -6.1944 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075675975.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:06 Heat of formation + Delta-G solvation = -132.314442 kcal Electronic energy + Delta-G solvation = -25457.380008 eV Core-core repulsion = 21600.681509 eV Total energy + Delta-G solvation = -3856.698500 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.73457 -39.43734 -38.89113 -36.78824 -34.57539 -32.83323 -32.46442 -31.97307 -30.41837 -29.52539 -28.25966 -25.64624 -24.62201 -23.46628 -21.99939 -21.56594 -20.80460 -20.44814 -18.08048 -17.82523 -17.00675 -16.79273 -16.38514 -16.10352 -15.79148 -15.47657 -15.31503 -14.98951 -14.72774 -14.22917 -14.17515 -13.90994 -13.83226 -13.73204 -13.38152 -12.93243 -12.82059 -12.44976 -12.32587 -12.24125 -12.18661 -11.80065 -11.72971 -11.64880 -11.35133 -11.28385 -11.20184 -11.03052 -10.63383 -10.43167 -9.93203 -9.88388 -9.61057 -9.47437 -9.06148 -9.00506 -8.53164 -6.94936 -6.31463 -4.03483 2.25845 2.49366 2.72290 2.92784 3.26045 3.31904 3.48254 3.60187 3.61441 4.02751 4.21959 4.30699 4.38485 4.39612 4.44901 4.59195 4.64983 4.66334 4.72174 4.85859 5.02212 5.04296 5.07606 5.10414 5.20880 5.24879 5.30459 5.32244 5.38480 5.50021 5.52137 5.59349 5.65555 5.73786 5.77564 5.84067 5.97161 6.08545 6.26317 6.45268 7.08701 7.54433 7.86540 7.91580 8.38882 8.43926 9.14684 10.77736 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015301 B = 0.002261 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.542884 B =12378.623988 C =13869.329029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.094 0.906 4 C -0.140 4.140 5 C 0.121 3.879 6 N -0.738 5.738 7 C 0.530 3.470 8 O -0.519 6.519 9 C -0.124 4.124 10 S -0.142 6.142 11 C -0.522 4.522 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 N -0.724 5.724 20 C 0.521 3.479 21 O -0.517 6.517 22 C 0.057 3.943 23 H 0.095 0.905 24 C -0.147 4.147 25 C -0.154 4.154 26 C 0.041 3.959 27 O -0.346 6.346 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.400 0.600 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.271 0.729 39 H 0.401 0.599 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.214 1.782 -20.679 28.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.042 3.958 3 H 0.112 0.888 4 C -0.178 4.178 5 C -0.003 4.003 6 N -0.393 5.393 7 C 0.315 3.685 8 O -0.393 6.393 9 C -0.275 4.275 10 S 0.084 5.916 11 C -0.669 4.669 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.517 5.517 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 N -0.378 5.378 20 C 0.306 3.694 21 O -0.391 6.391 22 C -0.005 4.005 23 H 0.112 0.888 24 C -0.185 4.185 25 C -0.192 4.192 26 C -0.035 4.035 27 O -0.263 6.263 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.233 0.767 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.236 0.764 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.115 0.885 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.094 3.708 -21.879 28.632 hybrid contribution -0.254 -1.394 1.096 1.792 sum -18.348 2.314 -20.783 27.819 Atomic orbital electron populations 1.22170 0.94660 1.02334 1.02946 1.20900 0.94253 0.97787 0.82860 0.88830 1.22132 0.95335 1.02036 0.98285 1.21273 0.92729 0.98029 0.88309 1.45965 1.07727 1.58455 1.27146 1.20297 0.81644 0.79757 0.86761 1.90707 1.55004 1.44434 1.49157 1.23279 1.03082 1.03237 0.97894 1.84804 0.98078 1.73883 1.34818 1.22311 0.97286 1.39526 1.07805 0.89380 1.24719 0.98321 0.93891 0.94411 1.69934 1.21743 1.39447 1.20532 0.86730 0.82141 0.79913 0.83038 1.19193 1.19934 1.15941 1.46013 1.68170 1.14163 1.09484 1.20199 0.77710 0.87396 0.84104 1.90741 1.48192 1.15606 1.84562 1.22870 0.97806 0.92580 0.87199 0.88786 1.22948 0.93476 1.02973 0.99108 1.22944 0.99161 1.02524 0.94560 1.23517 0.89229 0.98292 0.92496 1.89284 1.64730 1.44090 1.28233 0.92273 0.91850 0.91275 0.89248 0.90409 0.91617 0.91469 0.76651 0.88487 0.88472 0.91920 0.76448 0.89733 0.89362 0.90082 0.89946 0.88526 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 9.48 37.16 0.35 -0.68 16 2 C 0.15 1.05 2.57 -67.93 -0.17 0.87 16 3 H 0.09 0.88 7.58 -51.93 -0.39 0.49 16 4 C -0.14 -0.82 4.87 -26.73 -0.13 -0.95 16 5 C 0.12 1.17 5.56 -4.04 -0.02 1.15 16 6 N -0.74 -8.37 5.56 -60.30 -0.33 -8.71 16 7 C 0.53 8.96 7.85 -10.99 -0.09 8.88 16 8 O -0.52 -10.91 15.86 5.56 0.09 -10.83 16 9 C -0.12 -2.31 6.16 36.01 0.22 -2.09 16 10 S -0.14 -3.55 18.55 -107.50 -1.99 -5.54 16 11 C -0.52 -14.84 10.04 30.94 0.31 -14.53 16 12 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 13 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 14 N -0.88 -26.32 13.97 55.49 0.78 -25.54 16 15 Si 0.86 21.60 27.74 -169.99 -4.71 16.89 16 16 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 19 N -0.72 -5.09 4.51 -53.81 -0.24 -5.33 16 20 C 0.52 5.31 7.05 -10.99 -0.08 5.23 16 21 O -0.52 -7.65 16.21 -13.66 -0.22 -7.87 16 22 C 0.06 0.46 3.71 -27.10 -0.10 0.36 16 23 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 24 C -0.15 -1.01 6.61 -25.16 -0.17 -1.17 16 25 C -0.15 -0.96 7.09 -25.17 -0.18 -1.14 16 26 C 0.04 0.28 7.63 37.93 0.29 0.57 16 27 O -0.35 -3.75 10.91 -54.45 -0.59 -4.34 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.68 7.75 -51.93 -0.40 0.28 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.40 3.29 8.47 -40.82 -0.35 2.94 16 36 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 37 H 0.10 1.66 8.14 -51.91 -0.42 1.24 16 38 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.40 1.81 8.60 -40.82 -0.35 1.46 16 40 H 0.08 0.72 7.86 -51.93 -0.41 0.32 16 41 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 388.98 15.07 5.86 5.86 Total: -1.00 -37.85 388.98 -8.63 -46.48 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -7.40 Total: -0.24 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 0.14 Total: -0.82 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.20 Total: -39.58 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.73 Total: -23.04 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.89 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.85 -8.63 -46.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675975.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.837 kcal (2) G-P(sol) polarization free energy of solvation -37.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds