Wall clock time and date at job start Tue Mar 31 2020 07:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47388 * 2 1 4 4 C 1.53000 * 109.47081 * 119.99748 * 2 1 3 5 5 C 1.52997 * 109.47080 * 184.99811 * 4 2 1 6 6 N 1.46504 * 109.47346 * 180.02562 * 5 4 2 7 7 C 1.34767 * 120.00414 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99938 * 0.02562 * 7 6 5 9 9 C 1.50707 * 120.00177 * 180.02562 * 7 6 5 10 10 H 1.08995 * 111.01744 * 55.77551 * 9 7 6 11 11 C 1.55305 * 111.12454 * 180.02562 * 9 7 6 12 12 C 1.54382 * 102.43395 * 152.15169 * 11 9 7 13 13 O 1.43232 * 107.59109 * 338.54226 * 12 11 9 14 14 C 1.43649 * 109.97368 * 358.28680 * 13 12 11 15 15 N 1.46497 * 109.47307 * 239.99852 * 2 1 3 16 16 C 1.34781 * 120.00104 * 84.99752 * 15 2 1 17 17 O 1.21279 * 119.99745 * 0.02562 * 16 15 2 18 18 C 1.50698 * 119.99788 * 180.02562 * 16 15 2 19 19 S 1.81009 * 109.46832 * 180.02562 * 18 16 15 20 20 C 1.76198 * 99.99721 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00603 * 359.97438 * 20 19 18 22 22 C 1.38807 * 119.99713 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99894 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99913 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47122 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47149 * 120.00185 * 24 22 20 27 27 H 1.48507 * 109.47152 * 240.00083 * 24 22 20 28 28 H 1.08996 * 109.47096 * 300.00348 * 1 2 3 29 29 H 1.09000 * 109.46767 * 60.00201 * 1 2 3 30 30 H 1.08999 * 109.47388 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46886 * 65.00065 * 4 2 1 32 32 H 1.08995 * 109.47278 * 305.00390 * 4 2 1 33 33 H 1.08997 * 109.47372 * 60.00209 * 5 4 2 34 34 H 1.09004 * 109.47453 * 299.99827 * 5 4 2 35 35 H 0.97009 * 119.99700 * 0.02562 * 6 5 4 36 36 H 1.09002 * 110.85041 * 33.86015 * 11 9 7 37 37 H 1.09001 * 110.84389 * 270.44152 * 11 9 7 38 38 H 1.09009 * 109.82643 * 98.05629 * 12 11 9 39 39 H 1.08999 * 109.83123 * 218.93188 * 12 11 9 40 40 H 1.08999 * 110.31137 * 143.34271 * 14 13 12 41 41 H 1.09000 * 110.31061 * 265.41699 * 14 13 12 42 42 H 0.97004 * 120.00310 * 265.00293 * 15 2 1 43 43 H 1.09002 * 109.47094 * 299.99965 * 18 16 15 44 44 H 1.08996 * 109.47743 * 60.00510 * 18 16 15 45 45 H 0.96998 * 119.99982 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3137 6 7 4.0532 -1.3044 2.5096 7 6 5.3740 -1.3398 2.7752 8 8 6.1582 -0.7992 2.0245 9 6 5.8764 -2.0512 4.0051 10 1 5.5389 -3.0875 4.0227 11 6 7.4235 -1.9641 4.1094 12 6 7.6596 -2.0520 5.6325 13 8 6.4421 -1.6683 6.2821 14 6 5.4571 -1.3030 5.3023 15 7 2.0184 -0.6906 -1.1961 16 6 2.1471 -0.0183 -2.3572 17 8 1.8590 1.1585 -2.4115 18 6 2.6489 -0.7289 -3.5877 19 16 2.7106 0.4343 -4.9731 20 6 3.3137 -0.6310 -6.2404 21 1 3.5230 -1.6674 -6.0204 22 6 3.5198 -0.1381 -7.5215 23 7 3.2652 1.1252 -7.7895 24 14 4.1585 -1.2677 -8.8652 25 1 4.3647 -2.6296 -8.3104 26 1 3.1707 -1.3278 -9.9723 27 1 5.4487 -0.7433 -9.3809 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.7516 -1.7715 1.2056 32 1 1.6053 -0.2617 2.1369 33 1 3.8532 0.4369 1.3573 34 1 3.9994 -1.0729 0.4260 35 1 3.4259 -1.7364 3.1103 36 1 7.7861 -1.0149 3.7148 37 1 7.8947 -2.8015 3.5948 38 1 7.9194 -3.0742 5.9080 39 1 8.4638 -1.3755 5.9217 40 1 4.4669 -1.6272 5.6221 41 1 5.4674 -0.2254 5.1390 42 1 2.2490 -1.6318 -1.1526 43 1 3.6480 -1.1214 -3.3985 44 1 1.9760 -1.5507 -3.8326 45 1 3.4096 1.4697 -8.6847 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075848156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:58 Heat of formation + Delta-G solvation = -135.021367 kcal Electronic energy + Delta-G solvation = -25156.729575 eV Core-core repulsion = 21299.913694 eV Total energy + Delta-G solvation = -3856.815881 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.74347 -39.53174 -38.88231 -36.68122 -34.76621 -32.85701 -32.42361 -31.84204 -30.22882 -29.06999 -28.45815 -25.48366 -24.67645 -23.25366 -22.34342 -21.65777 -20.49214 -20.32364 -18.11220 -17.78781 -17.19703 -16.64858 -16.45840 -15.94397 -15.78067 -15.57743 -15.16730 -14.83829 -14.79708 -14.39181 -14.05160 -13.96855 -13.68461 -13.63147 -13.26439 -12.96845 -12.72244 -12.65360 -12.18462 -12.00635 -11.97677 -11.92280 -11.75093 -11.52406 -11.44838 -11.12547 -11.06405 -11.01305 -10.75081 -10.24071 -10.06820 -9.80101 -9.49538 -9.39730 -9.07462 -8.93842 -8.22785 -6.49252 -6.21373 -3.91611 2.17588 2.64144 3.02390 3.08655 3.21934 3.28418 3.32997 3.33314 3.70204 3.76530 4.20746 4.23027 4.31705 4.39697 4.53296 4.62160 4.66577 4.68892 4.71602 5.05146 5.13839 5.14164 5.17499 5.18673 5.27402 5.28384 5.32207 5.41109 5.51506 5.57364 5.62772 5.65073 5.69925 5.88971 5.97015 5.99903 6.13283 6.15273 6.38936 6.62895 7.02791 7.60363 7.68135 7.79146 8.35909 8.60454 9.24149 10.86119 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014864 B = 0.002072 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.352232 B =13509.024644 C =14969.143007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.091 0.909 4 C -0.137 4.137 5 C 0.115 3.885 6 N -0.729 5.729 7 C 0.522 3.478 8 O -0.527 6.527 9 C -0.149 4.149 10 H 0.113 0.887 11 C -0.138 4.138 12 C 0.050 3.950 13 O -0.381 6.381 14 C 0.066 3.934 15 N -0.736 5.736 16 C 0.534 3.466 17 O -0.516 6.516 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.400 0.600 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.429 -9.908 28.562 30.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.175 4.175 5 C -0.008 4.008 6 N -0.381 5.381 7 C 0.307 3.693 8 O -0.402 6.402 9 C -0.171 4.171 10 H 0.131 0.869 11 C -0.176 4.176 12 C -0.026 4.026 13 O -0.300 6.300 14 C -0.011 4.011 15 N -0.391 5.391 16 C 0.320 3.680 17 O -0.390 6.390 18 C -0.305 4.305 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.137 4.137 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.234 0.766 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.085 0.915 42 H 0.231 0.769 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.496 -7.373 27.994 28.953 hybrid contribution 0.531 -2.846 -0.819 3.009 sum 1.027 -10.219 27.175 29.051 Atomic orbital electron populations 1.22172 0.94975 1.02105 1.02865 1.20774 0.94191 0.97752 0.83198 0.89054 1.22107 0.94435 1.02097 0.98896 1.21461 0.93726 0.98104 0.87530 1.46026 1.07375 1.57332 1.27382 1.20145 0.82322 0.80262 0.86565 1.90774 1.55221 1.44938 1.49276 1.23151 0.98206 1.01654 0.94060 0.86862 1.23039 0.93142 1.05303 0.96141 1.23201 0.87514 1.00630 0.91297 1.88421 1.22714 1.87503 1.31333 1.23386 0.93035 0.98926 0.85713 1.46133 1.69544 1.13855 1.09587 1.20300 0.76712 0.87222 0.83759 1.90700 1.48184 1.15723 1.84376 1.23538 1.03664 1.04858 0.98428 1.85392 1.86270 1.12914 0.98782 1.22908 1.50881 0.98161 0.96336 0.90899 1.25001 0.95119 0.95554 0.97985 1.70028 1.45613 1.13193 1.21436 0.86113 0.78527 0.80127 0.80698 1.19638 1.20575 1.20555 0.91856 0.91409 0.92534 0.90597 0.89693 0.90943 0.90743 0.76583 0.88813 0.89313 0.90873 0.90882 0.88953 0.91503 0.76949 0.89258 0.89275 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.48 37.16 0.35 -1.20 16 2 C 0.15 1.48 2.57 -67.93 -0.17 1.30 16 3 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 4 C -0.14 -0.85 4.87 -26.73 -0.13 -0.98 16 5 C 0.11 0.97 5.56 -4.04 -0.02 0.95 16 6 N -0.73 -4.79 5.56 -60.29 -0.33 -5.13 16 7 C 0.52 4.72 7.17 -10.99 -0.08 4.65 16 8 O -0.53 -7.35 15.71 5.56 0.09 -7.26 16 9 C -0.15 -0.92 3.51 -89.22 -0.31 -1.24 16 10 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 11 C -0.14 -0.95 6.16 -24.78 -0.15 -1.10 16 12 C 0.05 0.31 7.80 37.88 0.30 0.61 16 13 O -0.38 -3.07 11.36 -35.23 -0.40 -3.47 16 14 C 0.07 0.39 7.27 38.49 0.28 0.67 16 15 N -0.74 -9.05 4.53 -53.81 -0.24 -9.29 16 16 C 0.53 9.67 7.81 -10.98 -0.09 9.58 16 17 O -0.52 -11.43 15.52 5.56 0.09 -11.34 16 18 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.53 -15.32 9.50 30.94 0.29 -15.03 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.31 13.22 55.49 0.73 -25.57 16 24 Si 0.92 21.57 29.55 -169.99 -5.02 16.54 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.78 7.75 -51.93 -0.40 0.37 16 35 H 0.40 1.29 8.47 -40.82 -0.35 0.94 16 36 H 0.09 0.82 7.36 -51.93 -0.38 0.43 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.44 8.03 -51.93 -0.42 0.02 16 42 H 0.40 3.79 8.60 -40.82 -0.35 3.44 16 43 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 44 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 390.46 15.07 5.88 5.88 Total: -1.00 -37.73 390.46 -8.37 -46.10 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -7.33 Total: 0.06 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: 0.39 Total: -2.67 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.16 Total: -39.99 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.23 Total: -22.08 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.73 -8.37 -46.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075848156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.923 kcal (2) G-P(sol) polarization free energy of solvation -37.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds