Wall clock time and date at job start Tue Mar 31 2020 07:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.53005 * 109.46991 * 184.99870 * 4 2 1 6 6 N 1.46496 * 109.46653 * 179.97438 * 5 4 2 7 7 C 1.34786 * 119.99884 * 179.97438 * 6 5 4 8 8 O 1.21278 * 119.99706 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00179 * 180.02562 * 7 6 5 10 10 H 1.08995 * 110.43885 * 298.91229 * 9 7 6 11 11 C 1.54815 * 110.48857 * 176.22237 * 9 7 6 12 12 C 1.54995 * 102.09149 * 220.44515 * 11 9 7 13 13 O 1.44383 * 103.49209 * 37.02499 * 12 11 9 14 14 C 1.43744 * 106.97130 * 319.93676 * 13 12 11 15 15 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 16 16 C 1.34784 * 120.00075 * 85.00024 * 15 2 1 17 17 O 1.21280 * 119.99396 * 0.02562 * 16 15 2 18 18 C 1.50699 * 120.00292 * 180.02562 * 16 15 2 19 19 S 1.81001 * 109.47078 * 179.97438 * 18 16 15 20 20 C 1.76198 * 100.00195 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99657 * 0.02562 * 20 19 18 22 22 C 1.38793 * 120.00356 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99782 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00178 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47234 * 90.00223 * 24 22 20 26 26 H 1.48500 * 109.47124 * 209.99978 * 24 22 20 27 27 H 1.48494 * 109.47144 * 329.99869 * 24 22 20 28 28 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 29 29 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 30 30 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 32 32 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 33 33 H 1.08996 * 109.46933 * 299.99587 * 5 4 2 34 34 H 1.09006 * 109.47013 * 60.00029 * 5 4 2 35 35 H 0.97002 * 120.00465 * 0.02562 * 6 5 4 36 36 H 1.09002 * 110.90583 * 338.63950 * 11 9 7 37 37 H 1.08993 * 110.90637 * 102.24440 * 11 9 7 38 38 H 1.08995 * 110.61848 * 278.52352 * 12 11 9 39 39 H 1.08999 * 110.61970 * 155.52190 * 12 11 9 40 40 H 1.08993 * 109.88225 * 267.08745 * 14 13 12 41 41 H 1.09010 * 109.87595 * 145.93972 * 14 13 12 42 42 H 0.96996 * 120.00792 * 265.00493 * 15 2 1 43 43 H 1.08994 * 109.47030 * 299.99967 * 18 16 15 44 44 H 1.08993 * 109.47006 * 59.99994 * 18 16 15 45 45 H 0.97001 * 120.00091 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3137 6 7 4.0531 -1.3035 2.5101 7 6 5.3741 -1.3397 2.7754 8 8 6.1584 -0.8005 2.0238 9 6 5.8764 -2.0500 4.0058 10 1 5.4663 -1.5901 4.9049 11 6 7.4240 -2.0375 4.0449 12 6 7.7475 -3.4667 4.5502 13 8 6.7445 -4.2851 3.9109 14 6 5.5121 -3.5464 3.9512 15 7 2.0183 -0.6907 -1.1961 16 6 2.1471 -0.0184 -2.3572 17 8 1.8590 1.1585 -2.4115 18 6 2.6488 -0.7290 -3.5877 19 16 2.7091 0.4339 -4.9735 20 6 3.3125 -0.6313 -6.2408 21 1 3.5218 -1.6677 -6.0207 22 6 3.5177 -0.1387 -7.5220 23 7 3.2620 1.1244 -7.7903 24 14 4.1566 -1.2681 -8.8657 25 1 3.0108 -1.9059 -9.5626 26 1 4.9510 -0.4780 -9.8403 27 1 5.0159 -2.3183 -8.2625 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6055 -0.2618 2.1370 32 1 1.7516 -1.7716 1.2057 33 1 3.9994 -1.0729 0.4260 34 1 3.8532 0.4370 1.3573 35 1 3.4257 -1.7350 3.1111 36 1 7.8369 -1.8741 3.0495 37 1 7.7893 -1.2857 4.7443 38 1 7.6531 -3.5209 5.6347 39 1 8.7466 -3.7681 4.2353 40 1 4.9435 -3.8220 4.8394 41 1 4.9267 -3.7529 3.0551 42 1 2.2490 -1.6318 -1.1526 43 1 3.6479 -1.1215 -3.3986 44 1 1.9760 -1.5507 -3.8325 45 1 3.4058 1.4688 -8.6857 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075848157.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:02 Heat of formation + Delta-G solvation = -133.805488 kcal Electronic energy + Delta-G solvation = -25292.065023 eV Core-core repulsion = 21435.301867 eV Total energy + Delta-G solvation = -3856.763156 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.79217 -39.51110 -38.79295 -36.66059 -34.75716 -32.82852 -32.40791 -31.82405 -30.20459 -28.98523 -28.43459 -25.46621 -24.57647 -23.43965 -22.31225 -21.63552 -20.41199 -20.28478 -17.98795 -17.76411 -17.08629 -16.64964 -16.56734 -16.05398 -15.84820 -15.43085 -15.26497 -14.87306 -14.78318 -14.30106 -14.21392 -13.81399 -13.63114 -13.33811 -13.23023 -12.95352 -12.64579 -12.51732 -12.16877 -12.03355 -11.95059 -11.89528 -11.72471 -11.54853 -11.41746 -11.11570 -11.04389 -11.00047 -10.73919 -10.45410 -9.98374 -9.79493 -9.46329 -9.38144 -9.05145 -8.92193 -8.21700 -6.47686 -6.19618 -3.89951 2.23132 2.69412 3.03983 3.10244 3.24209 3.29615 3.34042 3.41333 3.71820 3.82863 4.19459 4.22572 4.37198 4.41216 4.55751 4.64179 4.69598 4.72150 4.78721 5.10075 5.11365 5.15402 5.15878 5.19297 5.26498 5.28605 5.33029 5.35396 5.52840 5.58792 5.66373 5.70177 5.72646 5.90882 5.98331 6.02921 6.14514 6.16973 6.30542 6.64475 7.05797 7.61730 7.69815 7.82964 8.37396 8.62015 9.25792 10.87819 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.012308 B = 0.002251 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.405139 B =12433.930102 C =14050.255025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.091 0.909 4 C -0.137 4.137 5 C 0.115 3.885 6 N -0.731 5.731 7 C 0.519 3.481 8 O -0.526 6.526 9 C -0.148 4.148 10 H 0.111 0.889 11 C -0.142 4.142 12 C 0.046 3.954 13 O -0.373 6.373 14 C 0.057 3.943 15 N -0.736 5.736 16 C 0.534 3.466 17 O -0.516 6.516 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.399 0.601 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.063 0.937 39 H 0.098 0.902 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.317 -9.638 29.913 31.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.175 4.175 5 C -0.008 4.008 6 N -0.383 5.383 7 C 0.304 3.696 8 O -0.401 6.401 9 C -0.169 4.169 10 H 0.129 0.871 11 C -0.180 4.180 12 C -0.031 4.031 13 O -0.292 6.292 14 C -0.020 4.020 15 N -0.391 5.391 16 C 0.320 3.680 17 O -0.390 6.390 18 C -0.305 4.305 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.233 0.767 36 H 0.117 0.883 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.116 0.884 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.231 0.769 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.438 -7.314 29.029 29.940 hybrid contribution 0.383 -2.484 -0.348 2.537 sum 0.820 -9.798 28.682 30.320 Atomic orbital electron populations 1.22173 0.94989 1.02102 1.02841 1.20772 0.94174 0.97743 0.83215 0.89072 1.22108 0.94464 1.02092 0.98865 1.21453 0.93689 0.98087 0.87563 1.46016 1.07384 1.57508 1.27401 1.20303 0.82268 0.80211 0.86783 1.90759 1.55149 1.45050 1.49174 1.22775 0.98871 0.97368 0.97922 0.87053 1.23144 0.92363 0.97725 1.04724 1.23637 0.93307 0.89132 0.97014 1.88923 1.18732 1.41577 1.79948 1.23138 0.88254 0.87962 1.02651 1.46130 1.69531 1.13868 1.09574 1.20302 0.76695 0.87217 0.83762 1.90698 1.48212 1.15725 1.84388 1.23536 1.03688 1.04855 0.98412 1.85379 1.86268 1.12969 0.98736 1.22865 1.50954 0.98147 0.96335 0.90948 1.24993 0.95115 0.95546 0.97973 1.70020 1.45627 1.13202 1.21467 0.86164 0.78820 0.79970 0.80533 1.20292 1.20752 1.19683 0.91404 0.91892 0.92528 0.89746 0.90590 0.90738 0.90994 0.76660 0.88299 0.89554 0.91893 0.88414 0.91235 0.89438 0.76928 0.89233 0.89274 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.48 37.16 0.35 -1.22 16 2 C 0.15 1.51 2.57 -67.93 -0.17 1.33 16 3 H 0.09 1.15 7.58 -51.93 -0.39 0.75 16 4 C -0.14 -0.88 4.87 -26.73 -0.13 -1.01 16 5 C 0.12 1.01 5.56 -4.04 -0.02 0.99 16 6 N -0.73 -5.04 5.39 -60.29 -0.32 -5.36 16 7 C 0.52 4.92 6.98 -10.98 -0.08 4.85 16 8 O -0.53 -7.62 15.46 5.56 0.09 -7.54 16 9 C -0.15 -0.92 3.44 -90.24 -0.31 -1.23 16 10 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 11 C -0.14 -1.00 6.50 -24.72 -0.16 -1.16 16 12 C 0.05 0.29 7.72 38.21 0.29 0.58 16 13 O -0.37 -3.32 11.52 -35.23 -0.41 -3.73 16 14 C 0.06 0.35 7.30 37.73 0.28 0.62 16 15 N -0.74 -9.21 4.53 -53.81 -0.24 -9.45 16 16 C 0.53 9.78 7.81 -10.98 -0.09 9.69 16 17 O -0.52 -11.52 15.52 5.56 0.09 -11.43 16 18 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 19 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 20 C -0.53 -15.42 9.50 30.94 0.29 -15.13 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.45 13.22 55.49 0.73 -25.71 16 24 Si 0.92 21.70 29.55 -169.99 -5.02 16.68 16 25 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.81 7.75 -51.93 -0.40 0.41 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.40 1.37 8.45 -40.82 -0.35 1.03 16 36 H 0.10 0.97 6.93 -51.93 -0.36 0.61 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.09 0.53 7.59 -51.92 -0.39 0.14 16 42 H 0.40 3.91 8.60 -40.82 -0.35 3.56 16 43 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 44 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 45 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 389.34 15.07 5.87 5.87 Total: -1.00 -38.29 389.34 -8.34 -46.63 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -7.29 Total: 0.49 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: 0.38 Total: -2.59 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.17 Total: -40.53 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.23 Total: -22.70 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.29 -8.34 -46.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075848157.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.173 kcal (2) G-P(sol) polarization free energy of solvation -38.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds