Wall clock time and date at job start Tue Mar 31 2020 06:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42893 * 109.47336 * 247.92709 * 3 2 1 5 5 C 1.35708 * 117.00418 * 180.02562 * 4 3 2 6 6 C 1.38992 * 119.91455 * 180.02562 * 5 4 3 7 7 C 1.37703 * 120.08929 * 180.02562 * 6 5 4 8 8 C 1.39737 * 119.91036 * 359.97438 * 7 6 5 9 9 C 1.47596 * 120.08777 * 180.02562 * 8 7 6 10 10 O 1.21588 * 120.00422 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00047 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00011 * 180.02562 * 11 9 8 13 13 H 1.09004 * 110.78106 * 31.75673 * 12 11 9 14 14 C 1.54338 * 110.84944 * 268.69074 * 12 11 9 15 15 N 1.47018 * 107.26330 * 219.67128 * 14 12 11 16 16 C 1.36941 * 125.65050 * 178.84438 * 15 14 12 17 17 H 1.07997 * 119.99520 * 344.55999 * 16 15 14 18 18 C 1.38815 * 120.00466 * 164.54582 * 16 15 14 19 19 N 1.31616 * 119.99663 * 350.14935 * 18 16 15 20 20 Si 1.86793 * 119.99813 * 170.14110 * 18 16 15 21 21 H 1.48500 * 109.46844 * 84.95782 * 20 18 16 22 22 H 1.48495 * 109.47658 * 324.95890 * 20 18 16 23 23 H 1.48501 * 109.47287 * 204.95398 * 20 18 16 24 24 C 1.47423 * 108.70638 * 358.58593 * 15 14 12 25 25 C 1.54911 * 104.83220 * 24.35646 * 24 15 14 26 26 H 1.08996 * 111.00442 * 81.06444 * 25 24 15 27 27 O 1.42896 * 111.00394 * 204.91792 * 25 24 15 28 28 C 1.39735 * 119.82156 * 0.27960 * 8 7 6 29 29 C 1.37702 * 119.91257 * 359.41992 * 28 8 7 30 30 H 4.38447 * 5.44455 * 179.97438 * 4 1 2 31 31 H 1.09005 * 109.46652 * 127.93204 * 3 2 1 32 32 H 1.08998 * 109.47018 * 7.93329 * 3 2 1 33 33 H 1.08001 * 119.95516 * 359.97129 * 6 5 4 34 34 H 1.07997 * 120.04570 * 180.02562 * 7 6 5 35 35 H 0.96996 * 119.99653 * 359.97438 * 11 9 8 36 36 H 1.09003 * 109.99025 * 100.20036 * 14 12 11 37 37 H 1.08995 * 109.77970 * 339.02672 * 14 12 11 38 38 H 0.97006 * 119.99781 * 179.97438 * 19 18 16 39 39 H 1.09001 * 110.37222 * 143.19231 * 24 15 14 40 40 H 1.08997 * 110.37061 * 265.40545 * 24 15 14 41 41 H 0.96694 * 114.00306 * 298.54134 * 27 25 24 42 42 H 1.08005 * 120.03788 * 179.72087 * 28 8 7 43 43 H 1.07996 * 119.95444 * 180.27686 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1222 0.5071 1.2485 5 6 4.4675 0.5751 1.4131 6 6 4.9966 1.0578 2.6043 7 6 6.3612 1.1288 2.7750 8 6 7.2143 0.7142 1.7488 9 6 8.6775 0.7881 1.9278 10 8 9.1421 1.2105 2.9689 11 7 9.4987 0.3882 0.9366 12 6 10.9510 0.4610 1.1145 13 1 11.2210 0.3046 2.1589 14 6 11.4990 1.8130 0.6108 15 7 12.7717 1.5405 -0.0728 16 6 13.5661 2.4744 -0.6828 17 1 13.1714 3.4539 -0.9093 18 6 14.8786 2.1624 -1.0098 19 7 15.4204 1.0484 -0.5652 20 14 15.8756 3.3236 -2.0807 21 1 16.4866 4.3779 -1.2320 22 1 14.9861 3.9537 -3.0891 23 1 16.9468 2.5624 -2.7723 24 6 13.0544 0.0961 0.0124 25 6 11.6681 -0.5688 0.2019 26 1 11.1509 -0.6724 -0.7518 27 8 11.7917 -1.8335 0.8554 28 6 6.6783 0.2345 0.5508 29 6 5.3127 0.1608 0.3902 30 1 -1.0500 0.0001 -0.0002 31 1 3.0090 0.6326 -0.8106 32 1 3.0098 -1.0170 -0.1418 33 1 4.3366 1.3785 3.3967 34 1 6.7715 1.5036 3.7010 35 1 9.1281 0.0515 0.1059 36 1 11.6670 2.4841 1.4531 37 1 10.7917 2.2607 -0.0873 38 1 16.3375 0.8302 -0.7940 39 1 13.5204 -0.2543 -0.9086 40 1 13.6981 -0.1148 0.8664 41 1 12.3175 -2.4800 0.3648 42 1 7.3345 -0.0826 -0.2464 43 1 4.8978 -0.2140 -0.5337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077795600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:01 Heat of formation + Delta-G solvation = -2.458309 kcal Electronic energy + Delta-G solvation = -26781.068366 eV Core-core repulsion = 22794.556900 eV Total energy + Delta-G solvation = -3986.511466 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.73807 -39.68863 -38.11069 -37.17349 -35.10286 -34.15256 -33.92511 -31.95798 -31.29890 -30.50790 -28.49977 -27.93075 -26.97475 -24.60141 -23.51051 -22.89057 -20.87031 -20.56765 -20.00954 -18.95961 -18.80269 -17.75523 -17.04685 -16.74438 -16.54157 -16.36712 -15.57107 -15.22334 -14.85995 -14.69495 -14.41597 -14.21085 -13.86150 -13.79611 -13.45018 -13.33938 -13.18204 -12.87213 -12.53651 -12.39001 -12.09523 -11.79694 -11.49133 -11.47856 -11.25993 -10.99226 -10.96356 -10.84543 -10.68863 -10.22011 -9.98946 -9.87966 -9.83182 -9.38035 -9.37236 -8.83975 -8.67390 -8.52114 -6.86405 -5.83249 -3.19028 0.70302 1.03436 1.76064 2.22197 2.84369 3.10585 3.28155 3.36572 3.41826 3.43575 3.73182 3.83455 4.32518 4.39041 4.49854 4.56462 4.59907 4.69747 4.74305 4.95748 5.10215 5.22559 5.30383 5.33176 5.38386 5.57405 5.62653 5.64361 5.80269 5.82364 5.92354 6.06331 6.11755 6.16388 6.33706 6.46249 6.69620 6.89444 6.92416 6.97690 7.16683 7.43341 7.66779 7.69306 8.05037 8.16739 8.38916 9.09044 9.70905 10.37766 11.29982 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.020488 B = 0.002123 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.330954 B =13183.282531 C =13498.016983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.203 4.203 3 C 0.171 3.829 4 O -0.308 6.308 5 C 0.150 3.850 6 C -0.157 4.157 7 C -0.019 4.019 8 C -0.164 4.164 9 C 0.560 3.440 10 O -0.537 6.537 11 N -0.710 5.710 12 C 0.143 3.857 13 H 0.104 0.896 14 C 0.128 3.872 15 N -0.596 5.596 16 C -0.234 4.234 17 H 0.077 0.923 18 C -0.004 4.004 19 N -0.916 5.916 20 Si 0.913 3.087 21 H -0.286 1.286 22 H -0.281 1.281 23 H -0.289 1.289 24 C 0.151 3.849 25 C 0.066 3.934 26 H 0.061 0.939 27 O -0.564 6.564 28 C -0.043 4.043 29 C -0.217 4.217 30 H 0.225 0.775 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.138 0.862 34 H 0.146 0.854 35 H 0.396 0.604 36 H 0.035 0.965 37 H 0.030 0.970 38 H 0.255 0.745 39 H 0.065 0.935 40 H 0.045 0.955 41 H 0.377 0.623 42 H 0.131 0.869 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.639 -5.975 -0.757 26.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.203 4.203 3 C 0.097 3.903 4 O -0.222 6.222 5 C 0.104 3.896 6 C -0.176 4.176 7 C -0.038 4.038 8 C -0.167 4.167 9 C 0.347 3.653 10 O -0.415 6.415 11 N -0.361 5.361 12 C 0.038 3.962 13 H 0.122 0.878 14 C 0.001 3.999 15 N -0.324 5.324 16 C -0.362 4.362 17 H 0.095 0.905 18 C -0.201 4.201 19 N -0.562 5.562 20 Si 0.743 3.257 21 H -0.213 1.213 22 H -0.206 1.206 23 H -0.215 1.215 24 C 0.025 3.975 25 C 0.006 3.994 26 H 0.079 0.921 27 O -0.369 6.369 28 C -0.062 4.062 29 C -0.236 4.236 30 H 0.242 0.758 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.156 0.844 34 H 0.163 0.837 35 H 0.231 0.769 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.224 0.776 42 H 0.149 0.851 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -25.585 -5.314 0.490 26.135 hybrid contribution 0.659 0.060 -1.671 1.797 sum -24.926 -5.254 -1.180 25.501 Atomic orbital electron populations 1.25056 0.95900 0.99572 0.96742 1.22242 0.93523 1.01585 1.02923 1.19321 0.85043 1.00257 0.85663 1.86071 1.19545 1.79826 1.36712 1.19189 0.81535 0.94421 0.94419 1.20403 0.95028 1.05553 0.96597 1.21123 0.91321 0.92953 0.98389 1.19958 0.93471 1.07145 0.96158 1.18108 0.85947 0.77596 0.83645 1.90788 1.77322 1.46065 1.27364 1.45867 1.06818 1.65421 1.17955 1.22004 0.77477 0.95252 1.01464 0.87780 1.21674 0.89284 0.93493 0.95404 1.44250 1.21260 1.03208 1.63722 1.18989 0.91620 0.94587 1.31017 0.90517 1.24923 0.96177 0.98046 1.00955 1.69934 1.13866 1.24968 1.47412 0.86137 0.79670 0.79844 0.80073 1.21305 1.20625 1.21542 1.21957 0.90081 0.83839 1.01617 1.23586 0.99322 0.83143 0.93378 0.92133 1.86434 1.75879 1.23709 1.50859 1.21126 0.94614 0.94402 0.96020 1.21152 0.94069 1.08508 0.99868 0.75809 0.89166 0.89190 0.84420 0.83669 0.76895 0.94679 0.95189 0.93515 0.91653 0.93690 0.77571 0.85079 0.84755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 19.25 29.55 0.57 -0.37 16 2 C -0.20 -1.54 13.73 -37.12 -0.51 -2.05 16 3 C 0.17 1.13 5.21 34.37 0.18 1.31 16 4 O -0.31 -2.87 10.08 -18.83 -0.19 -3.06 16 5 C 0.15 1.43 6.70 -39.02 -0.26 1.17 16 6 C -0.16 -1.56 9.97 -39.50 -0.39 -1.96 16 7 C -0.02 -0.22 9.58 -39.22 -0.38 -0.59 16 8 C -0.16 -2.05 5.87 -104.96 -0.62 -2.66 16 9 C 0.56 8.93 7.76 -12.44 -0.10 8.84 16 10 O -0.54 -10.59 15.99 5.29 0.08 -10.51 16 11 N -0.71 -10.81 5.06 -53.04 -0.27 -11.07 16 12 C 0.14 2.69 3.04 -66.09 -0.20 2.49 16 13 H 0.10 2.21 7.55 -51.93 -0.39 1.82 16 14 C 0.13 2.79 7.01 -3.06 -0.02 2.76 16 15 N -0.60 -15.10 3.39 -170.07 -0.58 -15.68 16 16 C -0.23 -6.46 10.21 -15.06 -0.15 -6.61 16 17 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 18 C 0.00 -0.10 5.38 -17.43 -0.09 -0.19 16 19 N -0.92 -26.37 10.92 55.49 0.61 -25.76 16 20 Si 0.91 21.69 29.56 -169.99 -5.03 16.67 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 C 0.15 3.51 5.10 -2.53 -0.01 3.50 16 25 C 0.07 1.20 4.06 -24.58 -0.10 1.10 16 26 H 0.06 0.99 8.01 -51.93 -0.42 0.57 16 27 O -0.56 -9.45 13.47 -35.23 -0.47 -9.93 16 28 C -0.04 -0.42 9.53 -39.22 -0.37 -0.79 16 29 C -0.22 -1.83 9.01 -39.50 -0.36 -2.18 16 30 H 0.23 0.50 7.80 -54.09 -0.42 0.08 16 31 H 0.09 0.44 7.65 -51.93 -0.40 0.05 16 32 H 0.09 0.43 7.65 -51.93 -0.40 0.04 16 33 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.15 1.66 7.64 -52.49 -0.40 1.26 16 35 H 0.40 4.79 6.58 -40.82 -0.27 4.52 16 36 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.03 0.63 8.03 -51.93 -0.42 0.21 16 38 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.07 1.62 7.31 -51.93 -0.38 1.24 16 40 H 0.05 1.17 7.95 -51.93 -0.41 0.76 16 41 H 0.38 4.76 9.11 45.56 0.42 5.18 16 42 H 0.13 1.00 6.39 -52.48 -0.34 0.67 16 43 H 0.13 0.74 6.28 -52.49 -0.33 0.41 16 LS Contribution 371.52 15.07 5.60 5.60 Total: -1.00 -35.04 371.52 -7.61 -42.65 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -4.55 Total: 7.32 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -2.82 Total: 3.76 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.24 Total: -52.51 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.58 Total: -23.49 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.04 -7.61 -42.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077795600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.191 kcal (2) G-P(sol) polarization free energy of solvation -35.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds