Wall clock time and date at job start Tue Mar 31 2020 06:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42893 * 109.47336 * 247.92709 * 3 2 1 5 5 C 1.35708 * 117.00418 * 180.02562 * 4 3 2 6 6 C 1.38992 * 119.91455 * 180.02562 * 5 4 3 7 7 C 1.37703 * 120.08929 * 180.02562 * 6 5 4 8 8 C 1.39737 * 119.91036 * 359.97438 * 7 6 5 9 9 C 1.47596 * 120.08777 * 180.02562 * 8 7 6 10 10 O 1.21588 * 120.00422 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00047 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00011 * 180.02562 * 11 9 8 13 13 H 1.09004 * 110.78106 * 31.75673 * 12 11 9 14 14 C 1.54338 * 110.84944 * 268.69074 * 12 11 9 15 15 N 1.47018 * 107.26330 * 219.67128 * 14 12 11 16 16 C 1.36941 * 125.65050 * 178.84438 * 15 14 12 17 17 H 1.07997 * 119.99520 * 344.55999 * 16 15 14 18 18 C 1.38815 * 120.00466 * 164.54582 * 16 15 14 19 19 N 1.31616 * 119.99663 * 350.14935 * 18 16 15 20 20 Si 1.86793 * 119.99813 * 170.14110 * 18 16 15 21 21 H 1.48500 * 109.46844 * 84.95782 * 20 18 16 22 22 H 1.48495 * 109.47658 * 324.95890 * 20 18 16 23 23 H 1.48501 * 109.47287 * 204.95398 * 20 18 16 24 24 C 1.47423 * 108.70638 * 358.58593 * 15 14 12 25 25 C 1.54911 * 104.83220 * 24.35646 * 24 15 14 26 26 H 1.08996 * 111.00442 * 81.06444 * 25 24 15 27 27 O 1.42896 * 111.00394 * 204.91792 * 25 24 15 28 28 C 1.39735 * 119.82156 * 0.27960 * 8 7 6 29 29 C 1.37702 * 119.91257 * 359.41992 * 28 8 7 30 30 H 4.38447 * 5.44455 * 179.97438 * 4 1 2 31 31 H 1.09005 * 109.46652 * 127.93204 * 3 2 1 32 32 H 1.08998 * 109.47018 * 7.93329 * 3 2 1 33 33 H 1.08001 * 119.95516 * 359.97129 * 6 5 4 34 34 H 1.07997 * 120.04570 * 180.02562 * 7 6 5 35 35 H 0.96996 * 119.99653 * 359.97438 * 11 9 8 36 36 H 1.09003 * 109.99025 * 100.20036 * 14 12 11 37 37 H 1.08995 * 109.77970 * 339.02672 * 14 12 11 38 38 H 0.97006 * 119.99781 * 179.97438 * 19 18 16 39 39 H 1.09001 * 110.37222 * 143.19231 * 24 15 14 40 40 H 1.08997 * 110.37061 * 265.40545 * 24 15 14 41 41 H 0.96694 * 114.00306 * 298.54134 * 27 25 24 42 42 H 1.08005 * 120.03788 * 179.72087 * 28 8 7 43 43 H 1.07996 * 119.95444 * 180.27686 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1222 0.5071 1.2485 5 6 4.4675 0.5751 1.4131 6 6 4.9966 1.0578 2.6043 7 6 6.3612 1.1288 2.7750 8 6 7.2143 0.7142 1.7488 9 6 8.6775 0.7881 1.9278 10 8 9.1421 1.2105 2.9689 11 7 9.4987 0.3882 0.9366 12 6 10.9510 0.4610 1.1145 13 1 11.2210 0.3046 2.1589 14 6 11.4990 1.8130 0.6108 15 7 12.7717 1.5405 -0.0728 16 6 13.5661 2.4744 -0.6828 17 1 13.1714 3.4539 -0.9093 18 6 14.8786 2.1624 -1.0098 19 7 15.4204 1.0484 -0.5652 20 14 15.8756 3.3236 -2.0807 21 1 16.4866 4.3779 -1.2320 22 1 14.9861 3.9537 -3.0891 23 1 16.9468 2.5624 -2.7723 24 6 13.0544 0.0961 0.0124 25 6 11.6681 -0.5688 0.2019 26 1 11.1509 -0.6724 -0.7518 27 8 11.7917 -1.8335 0.8554 28 6 6.6783 0.2345 0.5508 29 6 5.3127 0.1608 0.3902 30 1 -1.0500 0.0001 -0.0002 31 1 3.0090 0.6326 -0.8106 32 1 3.0098 -1.0170 -0.1418 33 1 4.3366 1.3785 3.3967 34 1 6.7715 1.5036 3.7010 35 1 9.1281 0.0515 0.1059 36 1 11.6670 2.4841 1.4531 37 1 10.7917 2.2607 -0.0873 38 1 16.3375 0.8302 -0.7940 39 1 13.5204 -0.2543 -0.9086 40 1 13.6981 -0.1148 0.8664 41 1 12.3175 -2.4800 0.3648 42 1 7.3345 -0.0826 -0.2464 43 1 4.8978 -0.2140 -0.5337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077795600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:00 Heat of formation + Delta-G solvation = -28.657064 kcal Electronic energy + Delta-G solvation = -26782.204430 eV Core-core repulsion = 22794.556900 eV Total energy + Delta-G solvation = -3987.647530 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.60906 -40.81805 -39.50589 -38.14333 -36.68470 -35.65646 -34.43719 -33.72634 -32.17442 -31.46274 -30.06992 -28.92537 -28.35552 -26.39974 -24.52267 -23.70468 -22.54706 -21.92451 -21.45761 -19.57219 -19.43262 -19.08410 -18.62916 -18.23858 -17.41948 -17.09266 -16.94180 -16.43328 -16.09142 -16.07024 -15.61587 -15.47640 -15.05284 -14.92940 -14.74505 -14.37345 -14.09564 -13.99425 -13.98546 -13.82372 -13.35394 -13.19447 -13.04993 -12.85603 -12.72835 -12.52078 -12.12317 -12.10583 -11.91933 -11.57077 -11.52874 -11.23118 -11.15121 -10.88760 -10.73744 -10.23529 -10.12253 -9.33007 -8.91593 -7.93435 -5.32688 -0.16286 0.30101 1.24410 1.47189 1.48677 1.57778 1.76562 1.80157 2.01668 2.47232 2.58088 2.81023 3.05143 3.27020 3.40775 3.59576 3.66430 3.70284 3.86323 3.88781 4.04933 4.08961 4.17342 4.25018 4.31254 4.39338 4.42985 4.54958 4.57575 4.84858 4.91380 4.92815 4.97794 5.06217 5.19011 5.24721 5.33620 5.42585 5.47233 5.58365 5.59585 6.12545 6.25935 6.50338 6.53810 6.85440 7.01112 7.18070 7.65880 8.32606 9.18250 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.020488 B = 0.002123 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.330954 B =13183.282531 C =13498.016983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.247 4.247 3 C 0.163 3.837 4 O -0.322 6.322 5 C 0.155 3.845 6 C -0.163 4.163 7 C -0.028 4.028 8 C -0.187 4.187 9 C 0.558 3.442 10 O -0.585 6.585 11 N -0.696 5.696 12 C 0.156 3.844 13 H 0.075 0.925 14 C 0.130 3.870 15 N -0.615 5.615 16 C -0.253 4.253 17 H 0.079 0.921 18 C -0.056 4.056 19 N -0.944 5.944 20 Si 0.981 3.019 21 H -0.287 1.287 22 H -0.267 1.267 23 H -0.290 1.290 24 C 0.157 3.843 25 C 0.093 3.907 26 H 0.095 0.905 27 O -0.567 6.567 28 C -0.035 4.035 29 C -0.208 4.208 30 H 0.254 0.746 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.148 0.852 34 H 0.134 0.866 35 H 0.415 0.585 36 H 0.010 0.990 37 H 0.046 0.954 38 H 0.252 0.748 39 H 0.046 0.954 40 H 0.006 0.994 41 H 0.398 0.602 42 H 0.156 0.844 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.327 -6.679 -3.068 29.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.247 4.247 3 C 0.090 3.910 4 O -0.235 6.235 5 C 0.109 3.891 6 C -0.182 4.182 7 C -0.048 4.048 8 C -0.190 4.190 9 C 0.348 3.652 10 O -0.467 6.467 11 N -0.348 5.348 12 C 0.050 3.950 13 H 0.093 0.907 14 C 0.003 3.997 15 N -0.343 5.343 16 C -0.381 4.381 17 H 0.097 0.903 18 C -0.251 4.251 19 N -0.591 5.591 20 Si 0.808 3.192 21 H -0.214 1.214 22 H -0.192 1.192 23 H -0.216 1.216 24 C 0.031 3.969 25 C 0.032 3.968 26 H 0.113 0.887 27 O -0.375 6.375 28 C -0.053 4.053 29 C -0.227 4.227 30 H 0.271 0.729 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.166 0.834 34 H 0.152 0.848 35 H 0.254 0.746 36 H 0.028 0.972 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.024 0.976 41 H 0.248 0.752 42 H 0.174 0.826 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -28.320 -6.045 -1.855 29.017 hybrid contribution 1.328 0.268 -0.911 1.633 sum -26.992 -5.777 -2.766 27.742 Atomic orbital electron populations 1.25933 0.96878 0.98228 0.95138 1.22782 0.94523 1.02959 1.04416 1.19641 0.84869 1.01655 0.84886 1.86055 1.19209 1.79824 1.38454 1.19309 0.82037 0.93440 0.94345 1.20490 0.94410 1.05722 0.97567 1.21086 0.92067 0.93508 0.98089 1.19736 0.90998 1.10158 0.98113 1.18691 0.87456 0.76256 0.82766 1.90762 1.78401 1.48233 1.29284 1.45604 1.04973 1.65362 1.18881 1.21521 0.79756 0.93962 0.99810 0.90659 1.21716 0.88431 0.94954 0.94567 1.44524 1.21997 1.03901 1.63855 1.19360 0.92368 0.95266 1.31136 0.90318 1.25764 0.97208 0.99755 1.02337 1.70121 1.13883 1.26598 1.48532 0.85082 0.78013 0.77688 0.78390 1.21352 1.19211 1.21550 1.21787 0.92608 0.83558 0.98934 1.23230 0.95866 0.83168 0.94488 0.88723 1.86406 1.76254 1.23282 1.51569 1.21360 0.95623 0.93131 0.95219 1.21488 0.93237 1.07208 1.00741 0.72948 0.87353 0.87255 0.83382 0.84824 0.74624 0.97204 0.93609 0.93923 0.93525 0.97629 0.75208 0.82650 0.81204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 19.25 74.32 1.43 0.03 16 2 C -0.25 -3.20 13.73 31.12 0.43 -2.77 16 3 C 0.16 1.68 5.21 70.18 0.37 2.04 16 4 O -0.32 -5.24 10.08 -90.29 -0.91 -6.15 16 5 C 0.15 2.58 6.70 22.63 0.15 2.73 16 6 C -0.16 -3.09 9.97 22.32 0.22 -2.86 16 7 C -0.03 -0.66 9.58 22.51 0.22 -0.44 16 8 C -0.19 -4.48 5.87 -20.08 -0.12 -4.60 16 9 C 0.56 17.81 7.76 86.71 0.67 18.48 16 10 O -0.59 -24.06 15.99 -3.99 -0.06 -24.12 16 11 N -0.70 -20.35 5.06 -439.98 -2.23 -22.58 16 12 C 0.16 5.88 3.04 46.19 0.14 6.02 16 13 H 0.08 3.32 7.55 -2.38 -0.02 3.30 16 14 C 0.13 5.73 7.01 86.73 0.61 6.34 16 15 N -0.61 -31.74 3.39 -691.97 -2.35 -34.09 16 16 C -0.25 -14.14 10.21 84.03 0.86 -13.28 16 17 H 0.08 4.25 7.85 -2.91 -0.02 4.23 16 18 C -0.06 -3.15 5.38 84.86 0.46 -2.70 16 19 N -0.94 -55.67 10.92 21.65 0.24 -55.44 16 20 Si 0.98 44.85 29.56 68.60 2.03 46.88 16 21 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 23 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 24 C 0.16 7.46 5.10 86.86 0.44 7.91 16 25 C 0.09 3.28 4.06 31.99 0.13 3.41 16 26 H 0.10 2.78 8.01 -2.39 -0.02 2.76 16 27 O -0.57 -18.18 13.47 -148.98 -2.01 -20.18 16 28 C -0.03 -0.57 9.53 22.51 0.21 -0.35 16 29 C -0.21 -2.74 9.01 22.33 0.20 -2.53 16 30 H 0.25 0.36 7.80 -4.42 -0.03 0.33 16 31 H 0.11 0.68 7.65 -2.38 -0.02 0.66 16 32 H 0.11 0.66 7.65 -2.39 -0.02 0.64 16 33 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 34 H 0.13 3.27 7.64 -2.91 -0.02 3.25 16 35 H 0.42 8.79 6.58 -92.71 -0.61 8.18 16 36 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.05 1.88 8.03 -2.39 -0.02 1.86 16 38 H 0.25 14.34 8.31 -92.70 -0.77 13.57 16 39 H 0.05 2.36 7.31 -2.39 -0.02 2.34 16 40 H 0.01 0.31 7.95 -2.39 -0.02 0.29 16 41 H 0.40 9.28 9.11 -74.06 -0.67 8.61 16 42 H 0.16 1.70 6.39 -2.91 -0.02 1.68 16 43 H 0.17 0.99 6.28 -2.91 -0.02 0.97 16 Total: -1.00 -79.29 371.52 0.91 -78.38 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -0.22 Total: 19.87 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: 6.42 Total: 17.43 kcal Atomic # 7 Polarization: -107.77 SS G_CDS: -4.33 Total: -112.11 kcal Atomic # 8 Polarization: -47.47 SS G_CDS: -2.98 Total: -50.45 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -79.29 0.91 -78.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077795600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.723 kcal (2) G-P(sol) polarization free energy of solvation -79.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds