Wall clock time and date at job start Tue Mar 31 2020 07:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 110.91318 * 2 1 4 4 C 1.54908 * 111.00230 * 236.09749 * 2 1 3 5 5 N 1.47427 * 104.83269 * 204.91463 * 4 2 1 6 6 C 1.36939 * 125.65058 * 204.16176 * 5 4 2 7 7 H 1.07993 * 119.99627 * 359.97438 * 6 5 4 8 8 C 1.38814 * 119.99759 * 179.97438 * 6 5 4 9 9 N 1.31617 * 120.00082 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99651 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47246 * 60.00395 * 10 8 6 12 12 H 1.48500 * 109.47120 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47242 * 300.00197 * 10 8 6 14 14 C 1.47022 * 108.69979 * 24.13211 * 5 4 2 15 15 C 1.54321 * 107.27406 * 358.94056 * 14 5 4 16 16 H 1.08995 * 110.72508 * 96.34857 * 15 14 5 17 17 N 1.46499 * 110.72274 * 219.44774 * 15 14 5 18 18 C 1.34782 * 119.99708 * 273.54665 * 17 15 14 19 19 O 1.21278 * 119.99839 * 359.97438 * 18 17 15 20 20 C 1.50701 * 119.99786 * 179.97438 * 18 17 15 21 21 H 1.08997 * 109.62539 * 325.23420 * 20 18 17 22 22 C 1.53101 * 109.68106 * 85.43827 * 20 18 17 23 23 C 1.52589 * 110.10811 * 183.38014 * 22 20 18 24 24 C 1.52592 * 110.63941 * 290.06768 * 23 22 20 25 25 C 1.53032 * 109.98711 * 69.98694 * 24 23 22 26 26 S 1.81664 * 108.99879 * 296.34942 * 25 24 23 27 27 O 1.42105 * 108.66421 * 168.62833 * 26 25 24 28 28 O 1.42099 * 108.66351 * 299.87422 * 26 25 24 29 29 H 1.08997 * 109.47087 * 296.09623 * 1 2 3 30 30 H 1.09001 * 109.47057 * 56.09695 * 1 2 3 31 31 H 1.09004 * 109.47038 * 176.09396 * 1 2 3 32 32 H 1.09005 * 110.36789 * 86.08012 * 4 2 1 33 33 H 1.08997 * 110.37047 * 323.75567 * 4 2 1 34 34 H 0.96999 * 119.99857 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.88368 * 239.52474 * 14 5 4 36 36 H 1.09000 * 109.88508 * 118.35846 * 14 5 4 37 37 H 0.97001 * 120.00681 * 93.53728 * 17 15 14 38 38 H 1.08999 * 109.28102 * 63.21121 * 22 20 18 39 39 H 1.08997 * 109.28195 * 303.54999 * 22 20 18 40 40 H 1.08999 * 109.24307 * 169.77220 * 23 22 20 41 41 H 1.08998 * 109.20946 * 50.34423 * 23 22 20 42 42 H 1.08999 * 109.38734 * 309.82399 * 24 23 22 43 43 H 1.09005 * 109.38118 * 190.14790 * 24 23 22 44 44 H 1.09003 * 109.54972 * 176.48902 * 25 24 23 45 45 H 1.08997 * 109.54985 * 56.20923 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4272 -1.2431 -0.7734 6 6 4.4644 -1.5655 -1.6072 7 1 4.3338 -1.5101 -2.6778 8 6 5.6838 -1.9633 -1.0763 9 7 5.8428 -2.0312 0.2284 10 14 7.0989 -2.4024 -2.2138 11 1 7.4404 -1.2275 -3.0555 12 1 8.2815 -2.7927 -1.4048 13 1 6.6999 -3.5365 -3.0854 14 6 3.4674 -1.2742 0.6960 15 6 2.0862 -0.8080 1.2022 16 1 1.4478 -1.6632 1.4239 17 7 2.2286 0.0495 2.3814 18 6 2.3022 -0.5006 3.6097 19 8 2.2500 -1.7054 3.7386 20 6 2.4493 0.3815 4.8227 21 1 3.0620 1.2477 4.5733 22 6 1.0688 0.8507 5.2895 23 6 1.2115 1.8116 6.4662 24 6 1.6857 1.0694 7.7123 25 6 3.1409 0.6294 7.5369 26 16 3.2390 -0.5559 6.1637 27 8 4.6064 -0.7574 5.8337 28 8 2.4256 -1.6791 6.4736 29 1 -0.3633 0.4520 0.9229 30 1 -0.3633 0.5732 -0.8530 31 1 -0.3633 -1.0253 -0.0700 32 1 2.1560 -0.1720 -2.0837 33 1 1.4519 -1.6704 -1.4025 34 1 6.6947 -2.3095 0.5994 35 1 4.2425 -0.5998 1.0599 36 1 3.6650 -2.2894 1.0400 37 1 2.2701 1.0131 2.2784 38 1 0.4800 -0.0134 5.5974 39 1 0.5640 1.3580 4.4673 40 1 0.2466 2.2758 6.6701 41 1 1.9357 2.5854 6.2115 42 1 1.0590 0.1919 7.8712 43 1 1.6087 1.7285 8.5771 44 1 3.4917 0.1555 8.4537 45 1 3.7603 1.4981 7.3139 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079844980.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:42 Heat of formation + Delta-G solvation = -83.881777 kcal Electronic energy + Delta-G solvation = -27737.988483 eV Core-core repulsion = 23883.390181 eV Total energy + Delta-G solvation = -3854.598302 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -39.90263 -37.87334 -37.28172 -36.66552 -35.92220 -33.99960 -32.80005 -32.10824 -30.37113 -28.69210 -27.41050 -25.62711 -24.47277 -23.50289 -21.38362 -21.02693 -20.11350 -19.71014 -18.80109 -17.49748 -17.03694 -16.78855 -16.36056 -15.73718 -15.63356 -15.22985 -14.92992 -14.63602 -14.23617 -14.05903 -13.73389 -13.69105 -13.22586 -13.06590 -12.83054 -12.71538 -12.25436 -12.07673 -11.97708 -11.94533 -11.86536 -11.74039 -11.67401 -11.36228 -11.35504 -11.02086 -10.79526 -10.74115 -10.64376 -10.43688 -10.38391 -9.99355 -9.93357 -9.76772 -9.62903 -8.63491 -8.54379 -6.80930 -5.64403 -3.00885 -0.15622 2.56766 2.67738 3.10518 3.44602 3.48556 3.51492 3.73130 3.83191 4.17065 4.23430 4.36822 4.47546 4.53587 4.55245 4.72399 4.87935 5.01218 5.06344 5.16968 5.28418 5.36190 5.37635 5.40502 5.52503 5.57993 5.58184 5.73244 5.74867 5.94372 5.95075 6.10834 6.15384 6.31538 6.45896 6.60786 6.67052 6.89363 7.48463 7.59786 7.76226 7.88523 8.28172 8.33955 9.25228 9.85963 10.50322 11.46179 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015350 B = 0.003784 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.613347 B = 7397.033160 C = 8742.579245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 H 0.078 0.922 4 C 0.141 3.859 5 N -0.605 5.605 6 C -0.236 4.236 7 H 0.079 0.921 8 C -0.005 4.005 9 N -0.917 5.917 10 Si 0.912 3.088 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.171 3.829 15 C 0.117 3.883 16 H 0.091 0.909 17 N -0.698 5.698 18 C 0.539 3.461 19 O -0.518 6.518 20 C -0.607 4.607 21 H 0.153 0.847 22 C -0.098 4.098 23 C -0.138 4.138 24 C -0.112 4.112 25 C -0.615 4.615 26 S 2.443 3.557 27 O -0.924 6.924 28 O -0.907 6.907 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.042 0.958 33 H 0.022 0.978 34 H 0.255 0.745 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.398 0.602 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.136 0.864 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.430 13.236 14.449 23.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 H 0.096 0.904 4 C 0.015 3.985 5 N -0.332 5.332 6 C -0.364 4.364 7 H 0.096 0.904 8 C -0.202 4.202 9 N -0.564 5.564 10 Si 0.743 3.257 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.211 1.211 14 C 0.045 3.955 15 C 0.013 3.987 16 H 0.109 0.891 17 N -0.348 5.348 18 C 0.321 3.679 19 O -0.394 6.394 20 C -0.716 4.716 21 H 0.171 0.829 22 C -0.136 4.136 23 C -0.176 4.176 24 C -0.150 4.150 25 C -0.743 4.743 26 S 2.619 3.381 27 O -0.921 6.921 28 O -0.904 6.904 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.040 0.960 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.232 0.768 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.096 0.904 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.154 0.846 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.873 11.428 14.520 21.963 hybrid contribution 0.752 1.226 -0.618 1.566 sum -11.121 12.654 13.902 21.842 Atomic orbital electron populations 1.21707 0.94973 1.01912 1.00935 1.22621 0.94841 0.99512 0.96346 0.90392 1.21583 0.87710 0.95016 0.94214 1.44386 1.07829 1.79325 1.01679 1.18983 0.89302 1.39257 0.88858 0.90363 1.24844 0.97892 1.01525 0.95986 1.69945 1.24479 1.52760 1.09189 0.86205 0.81912 0.78222 0.79407 1.21211 1.21553 1.21135 1.21514 0.89809 1.00719 0.83472 1.22630 1.00743 0.92763 0.82605 0.89141 1.45800 1.73108 1.10327 1.05526 1.19012 0.77526 0.87758 0.83573 1.90900 1.49232 1.13692 1.85576 1.30698 1.11325 1.14755 1.14863 0.82910 1.21292 0.91970 1.01005 0.99379 1.21719 1.03732 0.98538 0.93588 1.21308 0.91645 1.02338 0.99731 1.30412 1.05604 1.18120 1.20180 1.07815 0.75702 0.76940 0.77600 1.93634 1.31922 1.83958 1.82573 1.93585 1.70253 1.44193 1.82375 0.93164 0.92717 0.92484 0.93944 0.96004 0.93441 0.92989 0.93121 0.76800 0.89027 0.89085 0.89279 0.90431 0.89500 0.89454 0.84604 0.84856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.31 37.16 0.35 -1.40 16 2 C -0.11 -1.84 3.25 -88.47 -0.29 -2.13 16 3 H 0.08 1.19 8.00 -51.93 -0.42 0.78 16 4 C 0.14 2.87 6.70 -2.53 -0.02 2.85 16 5 N -0.61 -15.71 3.39 -170.07 -0.58 -16.29 16 6 C -0.24 -6.70 10.28 -15.06 -0.15 -6.86 16 7 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 8 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 9 N -0.92 -28.31 10.31 55.49 0.57 -27.74 16 10 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 13 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 14 C 0.17 4.33 5.12 -3.07 -0.02 4.32 16 15 C 0.12 2.24 2.70 -66.10 -0.18 2.06 16 16 H 0.09 1.83 7.59 -51.93 -0.39 1.44 16 17 N -0.70 -10.95 5.13 -52.03 -0.27 -11.22 16 18 C 0.54 9.05 6.97 -10.98 -0.08 8.97 16 19 O -0.52 -11.28 15.19 -9.67 -0.15 -11.43 16 20 C -0.61 -6.83 2.81 -27.83 -0.08 -6.90 16 21 H 0.15 1.17 8.14 -51.93 -0.42 0.75 16 22 C -0.10 -0.75 5.00 -26.89 -0.13 -0.89 16 23 C -0.14 -0.67 5.63 -27.15 -0.15 -0.82 16 24 C -0.11 -0.62 5.73 -26.92 -0.15 -0.78 16 25 C -0.61 -4.34 6.35 37.17 0.24 -4.11 16 26 S 2.44 32.46 4.31 -107.50 -0.46 31.99 16 27 O -0.92 -16.62 18.10 -57.82 -1.05 -17.66 16 28 O -0.91 -15.26 17.06 -64.36 -1.10 -16.36 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.75 8.07 -51.93 -0.42 0.33 16 32 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.02 0.45 7.98 -51.93 -0.41 0.03 16 34 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 35 H 0.05 1.45 7.27 -51.93 -0.38 1.07 16 36 H 0.05 1.51 7.51 -51.93 -0.39 1.12 16 37 H 0.40 4.75 8.52 -40.82 -0.35 4.41 16 38 H 0.09 0.80 8.02 -51.93 -0.42 0.38 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.08 0.27 8.09 -51.93 -0.42 -0.15 16 42 H 0.09 0.52 8.02 -51.93 -0.42 0.10 16 43 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.14 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 368.21 15.07 5.55 5.55 Total: -1.00 -40.20 368.21 -10.63 -50.82 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -7.36 Total: 0.59 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -0.76 Total: -5.95 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.27 Total: -55.24 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -2.29 Total: -45.46 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Atomic # 16 Polarization: 32.46 SS G_CDS: -0.46 Total: 31.99 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -40.20 -10.63 -50.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079844980.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.057 kcal (2) G-P(sol) polarization free energy of solvation -40.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds