Wall clock time and date at job start Tue Mar 31 2020 07:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.63776 * 2 1 4 4 C 1.54332 * 110.84781 * 236.83437 * 2 1 3 5 5 N 1.47027 * 107.26476 * 219.67035 * 4 2 1 6 6 C 1.36937 * 125.64672 * 178.84847 * 5 4 2 7 7 H 1.08000 * 120.00146 * 342.87495 * 6 5 4 8 8 C 1.38816 * 119.99358 * 162.87473 * 6 5 4 9 9 N 1.31618 * 120.00134 * 331.90358 * 8 6 5 10 10 Si 1.86805 * 119.99637 * 151.90527 * 8 6 5 11 11 H 1.48495 * 109.47117 * 179.97438 * 10 8 6 12 12 H 1.48495 * 109.47144 * 299.99945 * 10 8 6 13 13 H 1.48503 * 109.46727 * 59.99659 * 10 8 6 14 14 C 1.47422 * 108.69925 * 358.58970 * 5 4 2 15 15 C 1.54908 * 104.83756 * 24.35512 * 14 5 4 16 16 H 1.08996 * 111.00586 * 81.09546 * 15 14 5 17 17 N 1.46494 * 111.00626 * 204.91777 * 15 14 5 18 18 C 1.34775 * 120.00203 * 273.54457 * 17 15 14 19 19 O 1.21288 * 119.99693 * 359.97438 * 18 17 15 20 20 C 1.50701 * 120.00636 * 180.02562 * 18 17 15 21 21 H 1.09005 * 109.54322 * 335.18887 * 20 18 17 22 22 C 1.53034 * 109.55002 * 215.00138 * 20 18 17 23 23 C 1.52590 * 109.98591 * 176.49355 * 22 20 18 24 24 C 1.52586 * 110.64143 * 69.97981 * 23 22 20 25 25 C 1.53035 * 109.99133 * 290.01413 * 24 23 22 26 26 S 1.81662 * 109.55155 * 95.47841 * 20 18 17 27 27 O 1.42103 * 108.66499 * 288.48570 * 26 20 18 28 28 O 1.42103 * 108.66421 * 59.82687 * 26 20 18 29 29 H 1.09001 * 109.47037 * 296.85874 * 1 2 3 30 30 H 1.09001 * 109.46787 * 56.85714 * 1 2 3 31 31 H 1.08996 * 109.47145 * 176.85663 * 1 2 3 32 32 H 1.09002 * 109.99335 * 100.20298 * 4 2 1 33 33 H 1.09001 * 109.78483 * 339.03070 * 4 2 1 34 34 H 0.96993 * 120.00363 * 353.96143 * 9 8 6 35 35 H 1.09003 * 110.36345 * 143.19401 * 14 5 4 36 36 H 1.08994 * 110.36562 * 265.40168 * 14 5 4 37 37 H 0.96998 * 120.00225 * 93.54151 * 17 15 14 38 38 H 1.09004 * 109.38055 * 296.64915 * 22 20 18 39 39 H 1.09001 * 109.38829 * 56.43947 * 22 20 18 40 40 H 1.08996 * 109.24312 * 190.28458 * 23 22 20 41 41 H 1.09005 * 109.24086 * 309.68482 * 23 22 20 42 42 H 1.09001 * 109.38534 * 50.17764 * 24 23 22 43 43 H 1.09000 * 109.38388 * 169.85519 * 24 23 22 44 44 H 1.08998 * 109.55184 * 183.50492 * 25 24 23 45 45 H 1.08995 * 109.55085 * 303.69899 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0793 -0.7890 -1.2073 5 7 3.2445 -1.5520 -0.7364 6 6 4.0043 -2.3995 -1.4978 7 1 3.6228 -2.7692 -2.4381 8 6 5.2647 -2.7833 -1.0609 9 7 5.9612 -1.9860 -0.2788 10 14 5.9724 -4.4314 -1.5830 11 1 7.3219 -4.6017 -0.9872 12 1 5.0822 -5.5233 -1.1138 13 1 6.0759 -4.4788 -3.0637 14 6 3.4632 -1.2486 0.6896 15 6 2.0789 -0.7934 1.2152 16 1 1.4454 -1.6511 1.4408 17 7 2.2214 0.0736 2.3873 18 6 2.3159 -0.4673 3.6182 19 8 2.2825 -1.6719 3.7553 20 6 2.4619 0.4246 4.8241 21 1 2.9028 1.3751 4.5235 22 6 3.3641 -0.2545 5.8570 23 6 3.5893 0.6763 7.0450 24 6 2.3073 0.8307 7.8580 25 6 1.2787 1.6396 7.0644 26 16 0.8294 0.7165 5.5656 27 8 0.0875 1.5738 4.7089 28 8 0.2747 -0.5339 5.9508 29 1 -0.3633 0.4643 0.9168 30 1 -0.3633 0.5619 -0.8605 31 1 -0.3633 -1.0261 -0.0563 32 1 2.3815 -0.1003 -1.9963 33 1 1.3155 -1.4714 -1.5805 34 1 5.6335 -1.0954 -0.0787 35 1 3.7960 -2.1406 1.2205 36 1 4.1945 -0.4479 0.7992 37 1 2.2478 1.0370 2.2777 38 1 2.8906 -1.1736 6.2022 39 1 4.3240 -0.4921 5.3985 40 1 4.3711 0.2630 7.6821 41 1 3.9034 1.6544 6.6805 42 1 1.8989 -0.1552 8.0802 43 1 2.5309 1.3467 8.7917 44 1 0.3900 1.7987 7.6751 45 1 1.7075 2.6024 6.7867 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079844981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:48 Heat of formation + Delta-G solvation = -89.826581 kcal Electronic energy + Delta-G solvation = -27740.098237 eV Core-core repulsion = 23885.242150 eV Total energy + Delta-G solvation = -3854.856088 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.03583 -38.10541 -37.45285 -36.80645 -36.28911 -34.22914 -32.95810 -32.23968 -30.34714 -28.86388 -27.56067 -25.49447 -24.59891 -23.44172 -21.37972 -21.08210 -20.28696 -19.81144 -19.08406 -17.70691 -17.48450 -17.05147 -16.75277 -16.16349 -15.86423 -15.21220 -14.67547 -14.48063 -14.34934 -14.13332 -13.91106 -13.69151 -13.38727 -13.34730 -13.00632 -12.91580 -12.48924 -12.39812 -12.29666 -12.21220 -11.97625 -11.80452 -11.74725 -11.50627 -11.33488 -10.96652 -10.85729 -10.72938 -10.64807 -10.57052 -10.45566 -10.09508 -9.96313 -9.81343 -9.57224 -8.78133 -8.38702 -6.93881 -6.09156 -3.13604 -0.44777 2.25085 2.59068 2.89895 3.43110 3.52051 3.58170 3.58707 3.74858 4.04124 4.11286 4.23803 4.33988 4.51061 4.60876 4.66886 4.82726 4.93950 5.01283 5.10124 5.20883 5.28542 5.34613 5.36956 5.41839 5.57379 5.65126 5.69011 5.81767 5.86165 5.89697 5.99202 6.08184 6.22713 6.35545 6.49765 6.60492 6.79801 6.94786 7.05071 7.52655 7.80572 8.18343 8.49463 9.02141 9.82301 10.36360 11.23340 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.016945 B = 0.003614 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.021961 B = 7746.769904 C = 8875.324434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.601 5.601 6 C -0.338 4.338 7 H 0.066 0.934 8 C -0.023 4.023 9 N -0.915 5.915 10 Si 1.064 2.936 11 H -0.285 1.285 12 H -0.293 1.293 13 H -0.293 1.293 14 C 0.142 3.858 15 C 0.126 3.874 16 H 0.098 0.902 17 N -0.706 5.706 18 C 0.526 3.474 19 O -0.504 6.504 20 C -0.597 4.597 21 H 0.153 0.847 22 C -0.096 4.096 23 C -0.140 4.140 24 C -0.113 4.113 25 C -0.602 4.602 26 S 2.423 3.577 27 O -0.931 6.931 28 O -0.913 6.913 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.027 0.973 33 H 0.031 0.969 34 H 0.267 0.733 35 H 0.056 0.944 36 H 0.028 0.972 37 H 0.400 0.600 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.137 0.863 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.203 12.113 16.624 22.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 H 0.096 0.904 4 C 0.015 3.985 5 N -0.328 5.328 6 C -0.466 4.466 7 H 0.084 0.916 8 C -0.225 4.225 9 N -0.555 5.555 10 Si 0.893 3.107 11 H -0.211 1.211 12 H -0.220 1.220 13 H -0.220 1.220 14 C 0.015 3.985 15 C 0.021 3.979 16 H 0.116 0.884 17 N -0.357 5.357 18 C 0.308 3.692 19 O -0.378 6.378 20 C -0.706 4.706 21 H 0.171 0.829 22 C -0.134 4.134 23 C -0.177 4.177 24 C -0.152 4.152 25 C -0.732 4.732 26 S 2.602 3.398 27 O -0.928 6.928 28 O -0.910 6.910 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.235 0.765 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.155 0.845 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.710 9.855 16.499 20.707 hybrid contribution -0.417 2.111 -0.162 2.158 sum -8.128 11.966 16.337 21.820 Atomic orbital electron populations 1.21779 0.94433 1.02189 1.01485 1.22439 0.95766 0.99249 0.95492 0.90446 1.21394 0.90549 0.92995 0.93551 1.44425 1.32376 1.51151 1.04873 1.19727 0.98357 1.22799 1.05699 0.91575 1.25763 0.92136 1.04825 0.99793 1.70788 1.37000 1.08353 1.39389 0.83550 0.76030 0.75746 0.75365 1.21080 1.21983 1.21981 1.21793 0.91797 0.99019 0.85913 1.22536 0.99799 0.92896 0.82684 0.88434 1.45927 1.73481 1.10507 1.05811 1.19108 0.78508 0.88333 0.83240 1.90804 1.47918 1.13808 1.85268 1.30455 1.24706 1.08947 1.06526 0.82877 1.21255 1.00820 0.98898 0.92432 1.21741 0.98201 1.00865 0.96921 1.21347 0.93620 1.00764 0.99437 1.30261 1.10024 1.13320 1.19554 1.08246 0.76770 0.76678 0.78126 1.93611 1.66507 1.67919 1.64774 1.93631 1.73749 1.41227 1.82409 0.92611 0.92456 0.92288 0.95539 0.95088 0.92181 0.92520 0.95459 0.76540 0.88479 0.88721 0.89070 0.90541 0.89395 0.89248 0.84498 0.84632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.16 37.16 0.34 -1.67 16 2 C -0.11 -1.87 3.16 -88.78 -0.28 -2.15 16 3 H 0.08 1.19 7.99 -51.93 -0.42 0.77 16 4 C 0.14 2.97 6.85 -3.06 -0.02 2.95 16 5 N -0.60 -15.65 3.29 -170.07 -0.56 -16.21 16 6 C -0.34 -9.81 10.02 -15.06 -0.15 -9.96 16 7 H 0.07 1.90 7.97 -52.49 -0.42 1.48 16 8 C -0.02 -0.68 5.08 -17.43 -0.09 -0.77 16 9 N -0.91 -28.14 12.93 55.49 0.72 -27.43 16 10 Si 1.06 26.07 30.00 -169.99 -5.10 20.97 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 C 0.14 3.42 5.00 -2.53 -0.01 3.41 16 15 C 0.13 2.41 2.77 -65.78 -0.18 2.23 16 16 H 0.10 2.03 7.63 -51.93 -0.40 1.64 16 17 N -0.71 -11.10 5.23 -51.73 -0.27 -11.37 16 18 C 0.53 8.52 6.83 -10.99 -0.07 8.44 16 19 O -0.50 -10.34 16.09 5.55 0.09 -10.26 16 20 C -0.60 -6.34 2.81 -27.86 -0.08 -6.42 16 21 H 0.15 1.00 8.11 -51.92 -0.42 0.58 16 22 C -0.10 -0.92 4.62 -26.92 -0.12 -1.04 16 23 C -0.14 -0.80 5.63 -27.15 -0.15 -0.95 16 24 C -0.11 -0.61 5.73 -26.92 -0.15 -0.76 16 25 C -0.60 -3.35 6.35 37.18 0.24 -3.11 16 26 S 2.42 25.74 4.67 -107.50 -0.50 25.24 16 27 O -0.93 -12.12 18.10 -57.81 -1.05 -13.16 16 28 O -0.91 -13.42 17.92 -57.81 -1.04 -14.46 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.87 8.07 -51.93 -0.42 0.45 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.03 0.65 7.77 -51.93 -0.40 0.24 16 34 H 0.27 8.21 6.06 -40.82 -0.25 7.96 16 35 H 0.06 1.58 7.95 -51.93 -0.41 1.17 16 36 H 0.03 0.69 6.80 -51.93 -0.35 0.34 16 37 H 0.40 4.89 8.49 -40.82 -0.35 4.55 16 38 H 0.10 1.06 7.84 -51.93 -0.41 0.65 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.31 8.09 -51.93 -0.42 -0.11 16 42 H 0.09 0.52 8.01 -51.93 -0.42 0.11 16 43 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.14 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.14 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 369.49 15.07 5.57 5.57 Total: -1.00 -39.26 369.49 -10.14 -49.40 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -7.25 Total: 1.52 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -0.74 Total: -9.81 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: -0.11 Total: -55.01 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -1.99 Total: -37.88 kcal Atomic # 14 Polarization: 26.07 SS G_CDS: -5.10 Total: 20.97 kcal Atomic # 16 Polarization: 25.74 SS G_CDS: -0.50 Total: 25.24 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -39.26 -10.14 -49.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079844981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.429 kcal (2) G-P(sol) polarization free energy of solvation -39.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds