Wall clock time and date at job start Tue Mar 31 2020 07:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 110.91898 * 2 1 4 4 C 1.55128 * 111.16086 * 236.07761 * 2 1 3 5 5 N 1.47424 * 104.94061 * 205.13318 * 4 2 1 6 6 C 1.36942 * 125.64485 * 204.03818 * 5 4 2 7 7 H 1.08003 * 120.00129 * 354.83924 * 6 5 4 8 8 C 1.38812 * 119.99675 * 174.83661 * 6 5 4 9 9 N 1.31618 * 120.00274 * 7.06619 * 8 6 5 10 10 Si 1.86803 * 119.99904 * 187.06019 * 8 6 5 11 11 H 1.48505 * 109.46934 * 94.98968 * 10 8 6 12 12 H 1.48496 * 109.47446 * 214.98924 * 10 8 6 13 13 H 1.48504 * 109.47301 * 334.99277 * 10 8 6 14 14 C 1.47020 * 108.70687 * 24.00210 * 5 4 2 15 15 C 1.54328 * 107.26645 * 358.94135 * 14 5 4 16 16 H 1.09000 * 110.72125 * 96.35206 * 15 14 5 17 17 N 1.46501 * 110.71401 * 219.44143 * 15 14 5 18 18 C 1.34778 * 120.00200 * 271.15445 * 17 15 14 19 19 O 1.21287 * 119.99741 * 0.02562 * 18 17 15 20 20 C 1.50700 * 120.00377 * 180.02562 * 18 17 15 21 21 C 1.53001 * 109.47264 * 180.02562 * 20 18 17 22 22 H 1.09001 * 110.00778 * 54.30245 * 21 20 18 23 23 C 1.53873 * 110.02589 * 292.92199 * 21 20 18 24 24 C 1.54195 * 108.68575 * 193.57543 * 23 21 20 25 25 S 1.82914 * 105.11395 * 27.83581 * 24 23 21 26 26 O 1.42101 * 109.35489 * 244.51851 * 25 24 23 27 27 O 1.42100 * 109.35618 * 111.31186 * 25 24 23 28 28 C 1.55044 * 110.02686 * 175.68081 * 21 20 18 29 29 H 1.08999 * 109.46770 * 296.09479 * 1 2 3 30 30 H 1.09009 * 109.47040 * 56.09076 * 1 2 3 31 31 H 1.08991 * 109.47553 * 176.09286 * 1 2 3 32 32 H 1.08999 * 110.41907 * 86.20460 * 4 2 1 33 33 H 1.08998 * 110.30143 * 324.00094 * 4 2 1 34 34 H 0.96993 * 120.00153 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.88371 * 239.52116 * 14 5 4 36 36 H 1.08999 * 109.88172 * 118.35738 * 14 5 4 37 37 H 0.96996 * 119.99916 * 91.16683 * 17 15 14 38 38 H 1.08998 * 109.47134 * 300.00493 * 20 18 17 39 39 H 1.09002 * 109.46479 * 60.00064 * 20 18 17 40 40 H 1.08999 * 109.64835 * 313.37524 * 23 21 20 41 41 H 1.08998 * 109.65176 * 73.67839 * 23 21 20 42 42 H 1.08998 * 110.27169 * 268.93851 * 24 23 21 43 43 H 1.09007 * 110.42538 * 146.80875 * 24 23 21 44 44 H 1.08999 * 110.79289 * 279.99867 * 28 21 20 45 45 H 1.09001 * 110.79280 * 43.26397 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0900 -0.8073 -1.2004 5 7 3.4298 -1.2474 -0.7707 6 6 4.4678 -1.5727 -1.6024 7 1 4.3159 -1.5977 -2.6714 8 6 5.7154 -1.8705 -1.0716 9 7 5.8679 -1.9767 0.2314 10 14 7.1779 -2.1206 -2.2065 11 1 7.9291 -0.8459 -2.3341 12 1 8.0691 -3.1660 -1.6426 13 1 6.6982 -2.5485 -3.5452 14 6 3.4672 -1.2782 0.6987 15 6 2.0861 -0.8080 1.2020 16 1 1.4450 -1.6615 1.4227 17 7 2.2287 0.0493 2.3814 18 6 2.2498 -0.4972 3.6133 19 8 2.1512 -1.6988 3.7454 20 6 2.3960 0.3848 4.8265 21 6 2.3914 -0.4796 6.0889 22 1 3.1554 -1.2534 6.0139 23 6 1.0070 -1.1229 6.2821 24 6 0.9236 -1.6961 7.7111 25 16 2.0558 -0.6607 8.7071 26 8 3.1299 -1.4604 9.1823 27 8 1.2980 0.1240 9.6177 28 6 2.6499 0.4026 7.3374 29 1 -0.3633 0.4520 0.9229 30 1 -0.3633 0.5734 -0.8530 31 1 -0.3634 -1.0252 -0.0700 32 1 2.1642 -0.1731 -2.0838 33 1 1.4552 -1.6694 -1.4055 34 1 6.7395 -2.1851 0.6023 35 1 4.2435 -0.6059 1.0640 36 1 3.6612 -2.2939 1.0434 37 1 2.3078 1.0102 2.2757 38 1 3.3358 0.9335 4.7657 39 1 1.5655 1.0897 4.8653 40 1 0.2307 -0.3704 6.1439 41 1 0.8708 -1.9246 5.5563 42 1 1.2533 -2.7350 7.7211 43 1 -0.0944 -1.6191 8.0931 44 1 3.7131 0.6164 7.4468 45 1 2.0746 1.3269 7.2839 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080072524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:31 Heat of formation + Delta-G solvation = -89.098869 kcal Electronic energy + Delta-G solvation = -26771.495490 eV Core-core repulsion = 22916.670958 eV Total energy + Delta-G solvation = -3854.824532 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.89319 -37.95913 -37.25821 -36.62123 -36.17867 -33.95068 -32.70552 -31.27863 -30.42893 -29.00775 -27.39721 -25.67781 -24.60433 -23.53971 -21.43677 -20.49566 -20.02246 -19.56917 -19.05445 -17.37969 -16.97520 -16.80481 -16.45534 -15.88461 -15.79456 -15.28597 -14.86441 -14.72051 -14.24339 -13.90948 -13.79980 -13.65384 -13.18549 -12.85494 -12.77677 -12.71964 -12.38876 -12.31535 -12.26085 -12.10279 -11.95678 -11.74514 -11.59523 -11.40295 -11.11266 -11.04909 -10.88240 -10.82417 -10.67303 -10.53072 -10.42332 -10.04444 -9.96982 -9.74160 -9.50016 -8.65038 -8.52430 -6.86994 -5.74134 -3.08175 -0.19238 2.26954 2.86140 3.27639 3.38053 3.42695 3.44716 3.46054 3.75503 4.05813 4.33350 4.36762 4.47685 4.53758 4.65387 4.87312 4.96651 5.07811 5.14439 5.22674 5.24389 5.37148 5.39860 5.48822 5.51170 5.52250 5.70810 5.84217 5.92060 5.92618 5.95911 6.08643 6.13555 6.29705 6.43574 6.58171 6.71874 6.88056 7.49299 7.56496 7.80054 7.83896 8.21881 8.49478 9.17965 9.78820 10.43793 11.36909 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.016766 B = 0.002748 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.621940 B =10186.325646 C =11416.677390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.232 4.232 7 H 0.079 0.921 8 C -0.006 4.006 9 N -0.917 5.917 10 Si 0.911 3.089 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.173 3.827 15 C 0.120 3.880 16 H 0.087 0.913 17 N -0.712 5.712 18 C 0.509 3.491 19 O -0.538 6.538 20 C -0.128 4.128 21 C -0.073 4.073 22 H 0.107 0.893 23 C -0.115 4.115 24 C -0.587 4.587 25 S 2.385 3.615 26 O -0.938 6.938 27 O -0.945 6.945 28 C -0.587 4.587 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.021 0.979 34 H 0.252 0.748 35 H 0.051 0.949 36 H 0.045 0.955 37 H 0.396 0.604 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.112 0.888 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.140 0.860 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.327 8.102 12.146 19.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.134 4.134 3 H 0.095 0.905 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.360 4.360 7 H 0.097 0.903 8 C -0.203 4.203 9 N -0.564 5.564 10 Si 0.741 3.259 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.206 1.206 14 C 0.047 3.953 15 C 0.015 3.985 16 H 0.105 0.895 17 N -0.362 5.362 18 C 0.295 3.705 19 O -0.415 6.415 20 C -0.169 4.169 21 C -0.093 4.093 22 H 0.126 0.874 23 C -0.153 4.153 24 C -0.717 4.717 25 S 2.570 3.430 26 O -0.935 6.935 27 O -0.942 6.942 28 C -0.717 4.717 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.039 0.961 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.230 0.770 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.098 0.902 41 H 0.130 0.870 42 H 0.156 0.844 43 H 0.154 0.846 44 H 0.158 0.842 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.950 7.129 13.253 19.216 hybrid contribution 0.780 0.384 -1.478 1.715 sum -11.170 7.513 11.774 17.884 Atomic orbital electron populations 1.21690 0.95050 1.01769 1.00931 1.22643 0.94757 0.99496 0.96490 0.90497 1.21625 0.87663 0.94972 0.94347 1.44415 1.08218 1.78854 1.01798 1.19050 0.87413 1.40399 0.89144 0.90318 1.24843 0.97655 1.01784 0.96013 1.69982 1.22675 1.54252 1.09473 0.86122 0.82775 0.77388 0.79621 1.21643 1.21735 1.20613 1.21482 0.90120 1.00288 0.83428 1.22495 1.00255 0.92750 0.82982 0.89476 1.45948 1.73870 1.10504 1.05888 1.20447 0.76498 0.89051 0.84496 1.90695 1.49394 1.15115 1.86262 1.21629 1.05080 0.98433 0.91766 1.21605 0.99042 0.96652 0.91987 0.87445 1.22103 0.96519 1.02465 0.94229 1.30465 1.16215 1.14803 1.10256 1.09110 0.77478 0.78352 0.78065 1.93633 1.53069 1.68100 1.78690 1.93602 1.71376 1.69175 1.60095 1.30746 1.12883 1.12773 1.15249 0.93156 0.92790 0.92619 0.93960 0.96135 0.93724 0.93061 0.93644 0.77048 0.87977 0.88528 0.90184 0.86974 0.84424 0.84596 0.84209 0.84322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.32 37.16 0.35 -1.32 16 2 C -0.11 -1.77 3.27 -88.36 -0.29 -2.06 16 3 H 0.08 1.14 8.01 -51.93 -0.42 0.72 16 4 C 0.14 2.75 6.72 -2.41 -0.02 2.74 16 5 N -0.61 -15.14 3.40 -169.93 -0.58 -15.71 16 6 C -0.23 -6.39 10.27 -15.06 -0.15 -6.54 16 7 H 0.08 2.09 7.84 -52.48 -0.41 1.68 16 8 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 9 N -0.92 -26.93 10.36 55.49 0.57 -26.36 16 10 Si 0.91 21.96 29.56 -169.99 -5.02 16.93 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 14 C 0.17 4.11 5.14 -3.06 -0.02 4.10 16 15 C 0.12 2.12 2.74 -66.10 -0.18 1.94 16 16 H 0.09 1.65 7.52 -51.93 -0.39 1.26 16 17 N -0.71 -9.90 5.12 -52.03 -0.27 -10.16 16 18 C 0.51 7.00 7.61 -10.98 -0.08 6.91 16 19 O -0.54 -9.47 13.93 5.55 0.08 -9.40 16 20 C -0.13 -1.11 5.19 -27.88 -0.14 -1.25 16 21 C -0.07 -0.62 2.22 -89.08 -0.20 -0.82 16 22 H 0.11 1.09 7.95 -51.93 -0.41 0.68 16 23 C -0.11 -0.93 5.33 -25.65 -0.14 -1.06 16 24 C -0.59 -4.05 7.26 37.78 0.27 -3.77 16 25 S 2.39 20.03 6.11 -107.50 -0.66 19.37 16 26 O -0.94 -11.74 18.15 -57.71 -1.05 -12.79 16 27 O -0.95 -10.81 18.15 -57.71 -1.05 -11.86 16 28 C -0.59 -3.68 6.67 38.24 0.26 -3.43 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.59 8.14 -51.92 -0.42 0.16 16 31 H 0.05 0.70 8.08 -51.93 -0.42 0.28 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.02 0.41 7.99 -51.93 -0.41 -0.01 16 34 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.05 1.35 7.18 -51.93 -0.37 0.97 16 36 H 0.05 1.28 7.61 -51.93 -0.40 0.88 16 37 H 0.40 4.32 8.54 -40.82 -0.35 3.97 16 38 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.10 0.55 8.09 -51.93 -0.42 0.13 16 40 H 0.08 0.48 8.06 -51.93 -0.42 0.07 16 41 H 0.11 1.17 6.54 -51.93 -0.34 0.83 16 42 H 0.14 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.14 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.14 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.14 0.57 8.10 -51.93 -0.42 0.15 16 LS Contribution 370.08 15.07 5.58 5.58 Total: -1.00 -37.95 370.08 -10.10 -48.05 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -7.27 Total: 1.19 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -0.44 Total: -4.84 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.27 Total: -52.24 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -2.02 Total: -34.04 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 20.03 SS G_CDS: -0.66 Total: 19.37 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.95 -10.10 -48.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080072524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.045 kcal (2) G-P(sol) polarization free energy of solvation -37.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds