Wall clock time and date at job start Tue Mar 31 2020 07:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 110.89340 * 2 1 4 4 C 1.54909 * 111.00196 * 236.12166 * 2 1 3 5 5 N 1.47426 * 104.83436 * 204.88311 * 4 2 1 6 6 C 1.36936 * 125.64710 * 204.09467 * 5 4 2 7 7 H 1.07995 * 120.00344 * 356.44834 * 6 5 4 8 8 C 1.38819 * 119.99644 * 176.44954 * 6 5 4 9 9 N 1.31618 * 119.99944 * 211.26548 * 8 6 5 10 10 Si 1.86799 * 120.00095 * 31.26683 * 8 6 5 11 11 H 1.48502 * 109.46733 * 275.30504 * 10 8 6 12 12 H 1.48495 * 109.47049 * 35.30295 * 10 8 6 13 13 H 1.48495 * 109.47069 * 155.30677 * 10 8 6 14 14 C 1.47021 * 108.70325 * 24.35217 * 5 4 2 15 15 C 1.54335 * 107.26593 * 358.58993 * 14 5 4 16 16 H 1.09000 * 110.51619 * 96.44605 * 15 14 5 17 17 N 1.46495 * 111.00469 * 219.60125 * 15 14 5 18 18 C 1.34782 * 119.99758 * 268.78051 * 17 15 14 19 19 O 1.21276 * 120.00169 * 359.97438 * 18 17 15 20 20 C 1.50700 * 119.99882 * 179.97438 * 18 17 15 21 21 C 1.52997 * 109.47352 * 179.97438 * 20 18 17 22 22 H 1.09006 * 110.00996 * 54.29646 * 21 20 18 23 23 C 1.53876 * 110.03019 * 175.68098 * 21 20 18 24 24 C 1.54164 * 108.70436 * 166.47593 * 23 21 20 25 25 S 1.82924 * 105.08652 * 332.08617 * 24 23 21 26 26 O 1.42100 * 109.35118 * 115.52332 * 25 24 23 27 27 O 1.42091 * 109.35416 * 248.59864 * 25 24 23 28 28 C 1.55052 * 110.02632 * 292.92333 * 21 20 18 29 29 H 1.08995 * 109.47688 * 182.42277 * 1 2 3 30 30 H 1.09000 * 109.46930 * 302.42795 * 1 2 3 31 31 H 1.08997 * 109.46836 * 62.41879 * 1 2 3 32 32 H 1.08998 * 110.36904 * 86.04151 * 4 2 1 33 33 H 1.09003 * 110.45997 * 323.76712 * 4 2 1 34 34 H 0.97003 * 120.00143 * 354.97689 * 9 8 6 35 35 H 1.08998 * 109.88464 * 118.13403 * 14 5 4 36 36 H 1.09000 * 109.88327 * 239.30011 * 14 5 4 37 37 H 0.96994 * 120.00556 * 88.77472 * 17 15 14 38 38 H 1.09002 * 109.47634 * 300.00307 * 20 18 17 39 39 H 1.09001 * 109.47276 * 59.99669 * 20 18 17 40 40 H 1.09005 * 109.64299 * 286.31901 * 23 21 20 41 41 H 1.08996 * 109.64775 * 46.75103 * 23 21 20 42 42 H 1.08998 * 110.32134 * 90.99002 * 24 23 21 43 43 H 1.09002 * 110.31605 * 213.08962 * 24 23 21 44 44 H 1.09000 * 110.78624 * 316.53893 * 28 21 20 45 45 H 1.09000 * 110.79174 * 80.00440 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0852 -0.8061 -1.2007 5 7 3.4274 -1.2421 -0.7743 6 6 4.4641 -1.5651 -1.6086 7 1 4.3162 -1.5658 -2.6784 8 6 5.7051 -1.8916 -1.0792 9 7 6.8017 -1.6102 -1.7505 10 14 5.8189 -2.7305 0.5860 11 1 5.7818 -1.7056 1.6600 12 1 4.6738 -3.6615 0.7504 13 1 7.0915 -3.4909 0.6712 14 6 3.4666 -1.2787 0.6950 15 6 2.0870 -0.8079 1.2019 16 1 1.4480 -1.6635 1.4206 17 7 2.2255 0.0484 2.3824 18 6 2.1973 -0.4944 3.6157 19 8 2.0567 -1.6917 3.7482 20 6 2.3404 0.3864 4.8301 21 6 2.2742 -0.4730 6.0942 22 1 3.0141 -1.2717 6.0413 23 6 2.5267 0.3979 7.3374 24 6 2.1226 -0.4020 8.5918 25 16 0.8210 -1.5545 8.0227 26 8 1.2846 -2.8911 8.1557 27 8 -0.4244 -1.1771 8.5933 28 6 0.8540 -1.0745 6.2536 29 1 -0.3634 -1.0267 0.0434 30 1 -0.3633 0.5511 0.8674 31 1 -0.3633 0.4758 -0.9109 32 1 2.1553 -0.1714 -2.0839 33 1 1.4527 -1.6702 -1.4046 34 1 6.7411 -1.2415 -2.6458 35 1 3.6615 -2.2956 1.0354 36 1 4.2431 -0.6075 1.0619 37 1 2.3376 1.0060 2.2765 38 1 3.2986 0.9046 4.7923 39 1 1.5323 1.1178 4.8457 40 1 3.5836 0.6585 7.3937 41 1 1.9279 1.3067 7.2760 42 1 2.9773 -0.9573 8.9781 43 1 1.7294 0.2672 9.3570 44 1 0.0908 -0.3256 6.0420 45 1 0.7294 -1.9474 5.6129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080072534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:35 Heat of formation + Delta-G solvation = -83.478036 kcal Electronic energy + Delta-G solvation = -27001.555001 eV Core-core repulsion = 23146.974207 eV Total energy + Delta-G solvation = -3854.580794 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -40.12513 -38.25267 -37.27449 -36.88141 -36.20887 -34.17034 -32.84401 -31.42961 -31.04003 -29.04004 -27.58702 -26.08477 -24.97670 -23.18491 -21.40587 -20.67626 -20.52343 -19.73704 -19.11155 -17.51406 -17.43251 -16.90421 -16.67532 -16.33284 -15.95321 -15.40644 -15.07578 -14.71304 -14.63726 -14.29370 -13.93305 -13.44386 -13.34856 -13.13244 -13.02291 -12.92478 -12.67462 -12.42190 -12.35725 -12.32040 -12.21653 -12.03719 -11.85476 -11.67621 -11.28673 -11.16316 -11.04595 -10.97349 -10.73942 -10.54663 -10.52871 -10.14398 -9.84021 -9.66056 -9.35836 -8.79190 -8.36870 -7.09963 -6.40272 -3.15605 -0.23005 2.25466 2.62877 3.09377 3.32929 3.42408 3.54681 3.68498 3.68901 3.97129 4.16599 4.19862 4.44002 4.48225 4.57999 4.69624 4.79207 4.90032 4.97078 5.05682 5.12438 5.16879 5.21374 5.26849 5.30129 5.31696 5.45924 5.63128 5.68577 5.68871 5.71080 5.83063 5.92746 6.07539 6.21230 6.34723 6.44181 6.52035 6.72292 6.81246 7.54044 7.67581 8.24394 8.31390 9.01486 9.58572 10.24232 11.11082 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.016856 B = 0.003132 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.702466 B = 8937.019930 C = 9852.300108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 H 0.081 0.919 4 C 0.143 3.857 5 N -0.609 5.609 6 C -0.338 4.338 7 H 0.080 0.920 8 C -0.017 4.017 9 N -0.912 5.912 10 Si 1.063 2.937 11 H -0.295 1.295 12 H -0.291 1.291 13 H -0.299 1.299 14 C 0.098 3.902 15 C 0.137 3.863 16 H 0.097 0.903 17 N -0.716 5.716 18 C 0.509 3.491 19 O -0.536 6.536 20 C -0.128 4.128 21 C -0.076 4.076 22 H 0.107 0.893 23 C -0.111 4.111 24 C -0.594 4.594 25 S 2.384 3.616 26 O -0.935 6.935 27 O -0.945 6.945 28 C -0.578 4.578 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.024 0.976 34 H 0.264 0.736 35 H 0.041 0.959 36 H 0.045 0.955 37 H 0.400 0.600 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.134 0.866 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.574 9.920 18.079 24.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.132 4.132 3 H 0.100 0.900 4 C 0.017 3.983 5 N -0.337 5.337 6 C -0.465 4.465 7 H 0.098 0.902 8 C -0.218 4.218 9 N -0.552 5.552 10 Si 0.897 3.103 11 H -0.223 1.223 12 H -0.219 1.219 13 H -0.227 1.227 14 C -0.029 4.029 15 C 0.032 3.968 16 H 0.115 0.885 17 N -0.367 5.367 18 C 0.295 3.705 19 O -0.413 6.413 20 C -0.169 4.169 21 C -0.096 4.096 22 H 0.125 0.875 23 C -0.149 4.149 24 C -0.724 4.724 25 S 2.568 3.432 26 O -0.932 6.932 27 O -0.942 6.942 28 C -0.709 4.709 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.234 0.766 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.114 0.886 41 H 0.105 0.895 42 H 0.155 0.845 43 H 0.155 0.845 44 H 0.153 0.847 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.078 7.783 19.742 24.417 hybrid contribution -0.490 1.526 -1.671 2.315 sum -12.569 9.309 18.071 23.900 Atomic orbital electron populations 1.21684 0.94548 1.01924 1.01308 1.22630 0.95221 0.99645 0.95710 0.90046 1.21563 0.86850 0.95331 0.94606 1.44764 1.09605 1.79522 0.99805 1.19959 0.88842 1.47894 0.89770 0.90203 1.25616 0.90493 0.99898 1.05780 1.70925 1.28003 1.43244 1.13030 0.83901 0.74008 0.77015 0.75392 1.22330 1.21899 1.22653 1.22106 0.94969 0.99403 0.86375 1.22089 0.97667 0.93524 0.83475 0.88470 1.45984 1.73949 1.11156 1.05600 1.20546 0.76306 0.89073 0.84557 1.90702 1.48821 1.15444 1.86340 1.21613 1.05181 0.98426 0.91678 1.21635 0.95043 0.98672 0.94230 0.87512 1.21988 1.04921 0.98630 0.89380 1.30496 1.18752 1.15860 1.07256 1.09203 0.77058 0.77064 0.79891 1.93637 1.81994 1.32336 1.85246 1.93600 1.40126 1.84543 1.75958 1.30755 1.04025 1.12813 1.23268 0.92514 0.92985 0.92413 0.93310 0.95847 0.92601 0.94204 0.93767 0.76587 0.87809 0.88191 0.88639 0.89508 0.84507 0.84492 0.84731 0.82934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.30 37.16 0.35 -1.23 16 2 C -0.11 -1.65 3.27 -88.47 -0.29 -1.94 16 3 H 0.08 1.13 8.01 -51.93 -0.42 0.71 16 4 C 0.14 2.75 6.70 -2.53 -0.02 2.74 16 5 N -0.61 -14.87 3.38 -170.07 -0.57 -15.44 16 6 C -0.34 -9.68 10.43 -15.06 -0.16 -9.83 16 7 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 8 C -0.02 -0.49 5.45 -17.43 -0.09 -0.59 16 9 N -0.91 -28.46 13.70 55.49 0.76 -27.70 16 10 Si 1.06 27.69 24.66 -169.99 -4.19 23.50 16 11 H -0.30 -7.29 6.37 56.52 0.36 -6.93 16 12 H -0.29 -7.46 6.35 56.52 0.36 -7.10 16 13 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 14 C 0.10 2.15 4.59 -3.06 -0.01 2.14 16 15 C 0.14 2.27 2.77 -66.09 -0.18 2.08 16 16 H 0.10 1.70 7.42 -51.93 -0.39 1.32 16 17 N -0.72 -9.05 5.12 -52.03 -0.27 -9.31 16 18 C 0.51 6.37 7.61 -10.98 -0.08 6.29 16 19 O -0.54 -8.88 14.04 5.56 0.08 -8.80 16 20 C -0.13 -0.92 5.19 -27.88 -0.14 -1.06 16 21 C -0.08 -0.55 2.21 -89.08 -0.20 -0.74 16 22 H 0.11 0.92 7.95 -51.93 -0.41 0.51 16 23 C -0.11 -0.47 5.75 -25.67 -0.15 -0.62 16 24 C -0.59 -2.84 7.26 37.77 0.27 -2.56 16 25 S 2.38 19.99 6.10 -107.50 -0.66 19.33 16 26 O -0.94 -12.02 18.14 -57.73 -1.05 -13.07 16 27 O -0.95 -10.89 18.15 -57.73 -1.05 -11.94 16 28 C -0.58 -4.48 6.09 38.24 0.23 -4.24 16 29 H 0.06 0.68 8.11 -51.93 -0.42 0.25 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.02 0.45 8.04 -51.93 -0.42 0.03 16 34 H 0.26 8.09 8.73 -40.82 -0.36 7.73 16 35 H 0.04 0.98 4.45 -51.93 -0.23 0.75 16 36 H 0.04 1.03 6.59 -51.93 -0.34 0.69 16 37 H 0.40 3.77 8.56 -40.82 -0.35 3.42 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.10 0.43 8.10 -51.93 -0.42 0.01 16 40 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.09 0.21 8.10 -51.93 -0.42 -0.21 16 42 H 0.14 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.14 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.13 0.74 8.07 -51.93 -0.42 0.32 16 45 H 0.15 1.52 6.87 -51.93 -0.36 1.16 16 LS Contribution 363.79 15.07 5.48 5.48 Total: -1.00 -40.18 363.79 -9.15 -49.33 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -7.21 Total: -1.81 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -0.48 Total: -9.57 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.08 Total: -52.46 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -2.02 Total: -33.81 kcal Atomic # 14 Polarization: 27.69 SS G_CDS: -4.19 Total: 23.50 kcal Atomic # 16 Polarization: 19.99 SS G_CDS: -0.66 Total: 19.33 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -40.18 -9.15 -49.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080072534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.152 kcal (2) G-P(sol) polarization free energy of solvation -40.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds