Wall clock time and date at job start Tue Mar 31 2020 05:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47002 * 2 1 4 4 C 1.50696 * 109.47420 * 120.00517 * 2 1 3 5 5 O 1.21286 * 119.99908 * 272.11712 * 4 2 1 6 6 N 1.34771 * 120.00254 * 92.11870 * 4 2 1 7 7 C 1.48154 * 127.84019 * 174.98887 * 6 4 2 8 8 C 1.54383 * 104.61613 * 219.56630 * 7 6 4 9 9 H 1.09005 * 110.43076 * 217.21354 * 8 7 6 10 10 O 1.42905 * 110.34319 * 95.00792 * 8 7 6 11 11 C 1.54284 * 104.96423 * 336.13348 * 8 7 6 12 12 H 1.09002 * 110.34238 * 118.87024 * 11 8 7 13 13 C 1.53001 * 110.33906 * 241.02530 * 11 8 7 14 14 N 1.46506 * 109.46866 * 184.99979 * 13 11 8 15 15 C 1.34772 * 120.00244 * 180.02562 * 14 13 11 16 16 O 1.21280 * 119.99861 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00278 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.47146 * 179.97438 * 17 15 14 19 19 C 1.76207 * 99.99898 * 179.97438 * 18 17 15 20 20 H 1.08005 * 119.99953 * 359.97438 * 19 18 17 21 21 C 1.38799 * 119.99755 * 180.02562 * 19 18 17 22 22 N 1.31622 * 120.00361 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99477 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47169 * 60.00315 * 23 21 19 25 25 H 1.48501 * 109.46957 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47391 * 299.99658 * 23 21 19 27 27 C 1.48145 * 127.83812 * 354.96563 * 6 4 2 28 28 H 1.09000 * 109.46842 * 180.31477 * 1 2 3 29 29 H 1.09004 * 109.46720 * 300.30715 * 1 2 3 30 30 H 1.08991 * 109.47560 * 60.31043 * 1 2 3 31 31 H 1.09003 * 109.46849 * 240.00335 * 2 1 3 32 32 H 1.08999 * 109.47395 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47361 * 300.00126 * 3 2 1 34 34 H 1.09003 * 109.47044 * 60.00455 * 3 2 1 35 35 H 1.08994 * 110.40493 * 100.78126 * 7 6 4 36 36 H 1.08999 * 110.40280 * 338.35203 * 7 6 4 37 37 H 0.96702 * 114.00415 * 64.45527 * 10 8 7 38 38 H 1.09002 * 109.47364 * 304.99492 * 13 11 8 39 39 H 1.08992 * 109.47619 * 65.00323 * 13 11 8 40 40 H 0.97001 * 119.99864 * 359.97438 * 14 13 11 41 41 H 1.09002 * 109.46517 * 299.99609 * 17 15 14 42 42 H 1.08992 * 109.47413 * 59.99358 * 17 15 14 43 43 H 0.97000 * 120.00133 * 180.02562 * 22 21 19 44 44 H 1.09000 * 110.40936 * 21.65228 * 27 6 4 45 45 H 1.08998 * 110.50837 * 259.26784 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.1980 -0.0939 2.2615 6 7 2.2978 -2.0310 1.1848 7 6 2.8892 -2.8764 2.2481 8 6 3.8452 -3.8306 1.5005 9 1 3.8255 -4.8215 1.9542 10 8 5.1753 -3.3080 1.5085 11 6 3.3011 -3.8902 0.0580 12 1 4.0483 -3.5209 -0.6444 13 6 2.8981 -5.3222 -0.2996 14 7 2.4974 -5.3796 -1.7076 15 6 2.0994 -6.5483 -2.2479 16 8 2.0734 -7.5527 -1.5687 17 6 1.6879 -6.6075 -3.6964 18 16 1.2110 -8.3015 -4.1195 19 6 0.7886 -8.0857 -5.8165 20 1 0.8695 -7.1103 -6.2733 21 6 0.3510 -9.1689 -6.5659 22 7 0.2520 -10.3574 -6.0091 23 14 -0.0975 -8.9399 -8.3648 24 1 1.0863 -8.4425 -9.1106 25 1 -0.5314 -10.2401 -8.9361 26 1 -1.2034 -7.9553 -8.4778 27 6 2.0638 -2.9668 0.0604 28 1 -0.3633 -1.0277 0.0056 29 1 -0.3633 0.5186 0.8873 30 1 -0.3634 0.5089 -0.8927 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 2.1112 -3.4423 2.7604 36 1 3.4434 -2.2621 2.9577 37 1 5.5688 -3.2475 2.3898 38 1 3.7441 -5.9896 -0.1351 39 1 2.0632 -5.6324 0.3286 40 1 2.5179 -4.5762 -2.2508 41 1 0.8423 -5.9397 -3.8613 42 1 2.5231 -6.2979 -4.3244 43 1 -0.0535 -11.1145 -6.5329 44 1 1.9953 -2.4208 -0.8805 45 1 1.1567 -3.5471 0.2290 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081287021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:58 Heat of formation + Delta-G solvation = -128.723753 kcal Electronic energy + Delta-G solvation = -25783.308462 eV Core-core repulsion = 21926.765667 eV Total energy + Delta-G solvation = -3856.542796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.80477 -39.36901 -38.55513 -35.99486 -34.79958 -34.74828 -32.45777 -31.73910 -29.55770 -28.82496 -27.56934 -26.15241 -25.48735 -24.28976 -22.54258 -20.94581 -20.24699 -19.38892 -17.98914 -17.89612 -17.59898 -16.57146 -16.33668 -16.09378 -15.55523 -15.38372 -14.93786 -14.82763 -14.62730 -14.34557 -14.18082 -13.93808 -13.40471 -13.35322 -13.17570 -12.97019 -12.63957 -12.56236 -12.46504 -12.31649 -12.26964 -11.98133 -11.68972 -11.57891 -11.48551 -11.15582 -11.07608 -11.06087 -10.79933 -10.66573 -10.04200 -9.85754 -9.49402 -9.14441 -9.09485 -8.99873 -8.27907 -6.53562 -6.24310 -3.95362 2.26650 2.46713 2.91442 3.02079 3.21467 3.24215 3.27321 3.52200 3.81103 3.84656 4.02704 4.17785 4.26467 4.43217 4.47394 4.56879 4.61237 4.76496 4.88158 4.95766 5.09362 5.10890 5.12540 5.19763 5.22593 5.28921 5.32092 5.34357 5.41355 5.50184 5.54330 5.60418 5.70624 5.75025 5.80092 5.84322 5.86095 6.08995 6.47643 7.08204 7.19187 7.56193 7.59181 7.78206 8.32117 8.52263 9.20944 10.83035 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.002274 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.594686 B =12311.541077 C =13570.520099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C -0.136 4.136 4 C 0.542 3.458 5 O -0.541 6.541 6 N -0.620 5.620 7 C 0.073 3.927 8 C 0.098 3.902 9 H 0.083 0.917 10 O -0.557 6.557 11 C -0.109 4.109 12 H 0.104 0.896 13 C 0.132 3.868 14 N -0.740 5.740 15 C 0.533 3.467 16 O -0.516 6.516 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.102 3.898 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.382 0.618 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.398 0.602 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.269 0.731 44 H 0.087 0.913 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.036 20.486 14.206 25.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C -0.194 4.194 4 C 0.331 3.669 5 O -0.418 6.418 6 N -0.354 5.354 7 C -0.050 4.050 8 C 0.038 3.962 9 H 0.101 0.899 10 O -0.363 6.363 11 C -0.129 4.129 12 H 0.122 0.878 13 C 0.007 3.993 14 N -0.395 5.395 15 C 0.319 3.681 16 O -0.389 6.389 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.021 4.021 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.230 0.770 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.106 0.894 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.894 19.088 15.252 24.919 hybrid contribution -0.129 1.527 -1.643 2.247 sum 4.765 20.616 13.609 25.158 Atomic orbital electron populations 1.21743 0.92267 1.02727 1.03206 1.21279 0.98053 0.97835 0.96064 1.21674 1.01319 0.93568 1.02800 1.20412 0.76534 0.79629 0.90299 1.90696 1.53105 1.65139 1.32829 1.48939 1.62788 1.07198 1.16486 1.23112 0.97202 0.93181 0.91533 1.22668 0.82425 0.95945 0.95190 0.89904 1.86559 1.28090 1.87104 1.34592 1.22347 0.97671 0.95621 0.97258 0.87817 1.21281 1.00776 0.94065 0.83148 1.45975 1.70359 1.11669 1.11474 1.20318 0.76023 0.82475 0.89290 1.90712 1.51583 1.34059 1.62591 1.23530 1.04242 1.08428 0.94240 1.85409 1.85421 1.00402 1.12111 1.22821 1.51918 0.98030 0.95703 0.90959 1.24991 0.94892 0.94447 0.99227 1.70000 1.43741 0.99707 1.36820 0.86225 0.78922 0.77639 0.82721 1.19935 1.20809 1.19931 1.22633 0.97776 0.90941 0.90786 0.92102 0.91808 0.91030 0.89098 0.92394 0.91578 0.91383 0.90079 0.89326 0.77023 0.90759 0.91004 0.76808 0.89169 0.89158 0.92097 0.89446 0.89778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.18 37.16 0.34 -0.58 16 2 C -0.11 -0.83 2.88 -91.78 -0.26 -1.09 16 3 C -0.14 -0.99 8.82 37.16 0.33 -0.66 16 4 C 0.54 5.57 6.94 -10.99 -0.08 5.50 16 5 O -0.54 -7.51 16.52 5.55 0.09 -7.42 16 6 N -0.62 -5.30 3.32 -169.31 -0.56 -5.86 16 7 C 0.07 0.54 6.77 -2.41 -0.02 0.52 16 8 C 0.10 0.66 4.08 -25.33 -0.10 0.56 16 9 H 0.08 0.45 7.71 -51.93 -0.40 0.05 16 10 O -0.56 -4.26 13.27 -35.23 -0.47 -4.73 16 11 C -0.11 -0.79 2.90 -89.22 -0.26 -1.05 16 12 H 0.10 0.82 7.98 -51.93 -0.41 0.40 16 13 C 0.13 1.25 4.80 -4.04 -0.02 1.23 16 14 N -0.74 -8.36 5.43 -60.29 -0.33 -8.69 16 15 C 0.53 9.12 7.85 -10.99 -0.09 9.04 16 16 O -0.52 -11.02 15.86 5.56 0.09 -10.93 16 17 C -0.15 -2.91 6.16 36.01 0.22 -2.69 16 18 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 19 C -0.54 -14.93 9.50 30.94 0.29 -14.64 16 20 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -25.77 13.22 55.49 0.73 -25.04 16 23 Si 0.92 21.01 29.55 -169.99 -5.02 15.99 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 C 0.10 0.68 6.30 -2.41 -0.02 0.66 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.54 6.54 -51.93 -0.34 0.20 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.57 7.85 -51.93 -0.41 0.16 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.71 7.87 -51.93 -0.41 0.30 16 37 H 0.38 1.41 9.12 45.56 0.42 1.82 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.70 7.98 -51.93 -0.41 0.29 16 40 H 0.40 3.32 8.41 -40.82 -0.34 2.97 16 41 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 42 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.09 0.46 6.49 -51.93 -0.34 0.12 16 45 H 0.08 0.55 7.76 -51.93 -0.40 0.15 16 LS Contribution 387.82 15.07 5.84 5.84 Total: -1.00 -37.53 387.82 -7.99 -45.51 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -6.40 Total: 0.34 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 0.25 Total: -1.23 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: -0.16 Total: -39.58 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.29 Total: -23.07 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.53 -7.99 -45.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081287021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.211 kcal (2) G-P(sol) polarization free energy of solvation -37.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds