Wall clock time and date at job start Tue Mar 31 2020 05:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47002 * 2 1 4 4 C 1.50696 * 109.47420 * 120.00517 * 2 1 3 5 5 O 1.21286 * 119.99908 * 272.11712 * 4 2 1 6 6 N 1.34771 * 120.00254 * 92.11870 * 4 2 1 7 7 C 1.48154 * 127.84019 * 174.98887 * 6 4 2 8 8 C 1.54383 * 104.61613 * 219.56630 * 7 6 4 9 9 H 1.09005 * 110.43076 * 217.21354 * 8 7 6 10 10 O 1.42905 * 110.34319 * 95.00792 * 8 7 6 11 11 C 1.54284 * 104.96423 * 336.13348 * 8 7 6 12 12 H 1.09002 * 110.34238 * 118.87024 * 11 8 7 13 13 C 1.53001 * 110.33906 * 241.02530 * 11 8 7 14 14 N 1.46506 * 109.46866 * 184.99979 * 13 11 8 15 15 C 1.34772 * 120.00244 * 180.02562 * 14 13 11 16 16 O 1.21280 * 119.99861 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00278 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.47146 * 179.97438 * 17 15 14 19 19 C 1.76207 * 99.99898 * 179.97438 * 18 17 15 20 20 H 1.08005 * 119.99953 * 359.97438 * 19 18 17 21 21 C 1.38799 * 119.99755 * 180.02562 * 19 18 17 22 22 N 1.31622 * 120.00361 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99477 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47169 * 60.00315 * 23 21 19 25 25 H 1.48501 * 109.46957 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47391 * 299.99658 * 23 21 19 27 27 C 1.48145 * 127.83812 * 354.96563 * 6 4 2 28 28 H 1.09000 * 109.46842 * 180.31477 * 1 2 3 29 29 H 1.09004 * 109.46720 * 300.30715 * 1 2 3 30 30 H 1.08991 * 109.47560 * 60.31043 * 1 2 3 31 31 H 1.09003 * 109.46849 * 240.00335 * 2 1 3 32 32 H 1.08999 * 109.47395 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47361 * 300.00126 * 3 2 1 34 34 H 1.09003 * 109.47044 * 60.00455 * 3 2 1 35 35 H 1.08994 * 110.40493 * 100.78126 * 7 6 4 36 36 H 1.08999 * 110.40280 * 338.35203 * 7 6 4 37 37 H 0.96702 * 114.00415 * 64.45527 * 10 8 7 38 38 H 1.09002 * 109.47364 * 304.99492 * 13 11 8 39 39 H 1.08992 * 109.47619 * 65.00323 * 13 11 8 40 40 H 0.97001 * 119.99864 * 359.97438 * 14 13 11 41 41 H 1.09002 * 109.46517 * 299.99609 * 17 15 14 42 42 H 1.08992 * 109.47413 * 59.99358 * 17 15 14 43 43 H 0.97000 * 120.00133 * 180.02562 * 22 21 19 44 44 H 1.09000 * 110.40936 * 21.65228 * 27 6 4 45 45 H 1.08998 * 110.50837 * 259.26784 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.1980 -0.0939 2.2615 6 7 2.2978 -2.0310 1.1848 7 6 2.8892 -2.8764 2.2481 8 6 3.8452 -3.8306 1.5005 9 1 3.8255 -4.8215 1.9542 10 8 5.1753 -3.3080 1.5085 11 6 3.3011 -3.8902 0.0580 12 1 4.0483 -3.5209 -0.6444 13 6 2.8981 -5.3222 -0.2996 14 7 2.4974 -5.3796 -1.7076 15 6 2.0994 -6.5483 -2.2479 16 8 2.0734 -7.5527 -1.5687 17 6 1.6879 -6.6075 -3.6964 18 16 1.2110 -8.3015 -4.1195 19 6 0.7886 -8.0857 -5.8165 20 1 0.8695 -7.1103 -6.2733 21 6 0.3510 -9.1689 -6.5659 22 7 0.2520 -10.3574 -6.0091 23 14 -0.0975 -8.9399 -8.3648 24 1 1.0863 -8.4425 -9.1106 25 1 -0.5314 -10.2401 -8.9361 26 1 -1.2034 -7.9553 -8.4778 27 6 2.0638 -2.9668 0.0604 28 1 -0.3633 -1.0277 0.0056 29 1 -0.3633 0.5186 0.8873 30 1 -0.3634 0.5089 -0.8927 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 2.1112 -3.4423 2.7604 36 1 3.4434 -2.2621 2.9577 37 1 5.5688 -3.2475 2.3898 38 1 3.7441 -5.9896 -0.1351 39 1 2.0632 -5.6324 0.3286 40 1 2.5179 -4.5762 -2.2508 41 1 0.8423 -5.9397 -3.8613 42 1 2.5231 -6.2979 -4.3244 43 1 -0.0535 -11.1145 -6.5329 44 1 1.9953 -2.4208 -0.8805 45 1 1.1567 -3.5471 0.2290 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081287021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:58 Heat of formation + Delta-G solvation = -158.651415 kcal Electronic energy + Delta-G solvation = -25784.606223 eV Core-core repulsion = 21926.765667 eV Total energy + Delta-G solvation = -3857.840556 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.50507 -40.53936 -39.37911 -36.66692 -35.78379 -35.39912 -34.55518 -32.70356 -30.68206 -29.61562 -28.09245 -27.67636 -26.84800 -25.02108 -23.14924 -21.90165 -21.21829 -20.05197 -19.76297 -18.54909 -18.39780 -17.68030 -17.32373 -16.90354 -16.85063 -16.58382 -16.43454 -15.79273 -15.48330 -15.44357 -15.10641 -14.76297 -14.61440 -14.40399 -14.12558 -13.93815 -13.60492 -13.44537 -13.13839 -13.11475 -13.09575 -12.91387 -12.84808 -12.73020 -12.62254 -12.55537 -12.12584 -12.06477 -11.74237 -11.70628 -11.25158 -11.10189 -10.91479 -10.78131 -10.23466 -10.10293 -9.81341 -8.62826 -8.31848 -6.09242 1.30014 1.45893 1.49660 1.52548 1.58945 1.66521 1.84054 2.24800 2.31498 3.02427 3.17547 3.23637 3.35194 3.42090 3.66900 3.87464 3.90429 3.98994 4.05190 4.10325 4.17175 4.30475 4.36980 4.42616 4.55146 4.57781 4.66124 4.68905 4.72536 4.75541 4.80940 4.82648 4.86943 4.96791 5.04965 5.17046 5.25312 5.29121 5.43771 5.44912 6.22466 6.42313 6.53413 6.79739 7.05192 7.09781 7.28658 8.76924 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.002274 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.594686 B =12311.541077 C =13570.520099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C -0.135 4.135 4 C 0.533 3.467 5 O -0.588 6.588 6 N -0.621 5.621 7 C 0.069 3.931 8 C 0.103 3.897 9 H 0.098 0.902 10 O -0.576 6.576 11 C -0.097 4.097 12 H 0.104 0.896 13 C 0.135 3.865 14 N -0.711 5.711 15 C 0.536 3.464 16 O -0.565 6.565 17 C -0.130 4.130 18 S -0.154 6.154 19 C -0.545 4.545 20 H 0.084 0.916 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 0.996 3.004 24 H -0.263 1.263 25 H -0.281 1.281 26 H -0.261 1.261 27 C 0.100 3.900 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.089 0.911 31 H 0.113 0.887 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.397 0.603 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.417 0.583 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.270 0.730 44 H 0.108 0.892 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.992 22.330 12.661 26.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.130 4.130 3 C -0.193 4.193 4 C 0.324 3.676 5 O -0.468 6.468 6 N -0.354 5.354 7 C -0.054 4.054 8 C 0.043 3.957 9 H 0.115 0.885 10 O -0.384 6.384 11 C -0.117 4.117 12 H 0.122 0.878 13 C 0.011 3.989 14 N -0.365 5.365 15 C 0.322 3.678 16 O -0.443 6.443 17 C -0.281 4.281 18 S 0.073 5.927 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.818 3.182 24 H -0.187 1.187 25 H -0.207 1.207 26 H -0.186 1.186 27 C -0.022 4.022 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.108 0.892 31 H 0.131 0.869 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.248 0.752 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.255 0.745 41 H 0.132 0.868 42 H 0.128 0.872 43 H 0.079 0.921 44 H 0.127 0.873 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.874 20.978 13.710 25.530 hybrid contribution -0.038 1.034 -1.036 1.464 sum 4.836 22.012 12.674 25.856 Atomic orbital electron populations 1.21739 0.91467 1.03014 1.03414 1.21361 0.98619 0.97625 0.95388 1.21672 1.00836 0.93761 1.02983 1.20995 0.76000 0.80023 0.90601 1.90670 1.55273 1.66217 1.34647 1.49039 1.61926 1.07090 1.17307 1.23223 0.97620 0.93106 0.91476 1.22653 0.81999 0.96342 0.94739 0.88465 1.86507 1.28416 1.87222 1.36287 1.22196 0.97941 0.93972 0.97607 0.87762 1.21350 1.00485 0.95436 0.81615 1.45662 1.67931 1.10503 1.12445 1.20007 0.76140 0.83326 0.88373 1.90706 1.54114 1.36148 1.63335 1.23379 1.05720 1.03067 0.95978 1.85595 1.86196 1.07938 1.12973 1.23178 1.51565 0.98645 0.95885 0.89787 1.26109 0.94631 0.93988 1.04464 1.70172 1.45034 1.00767 1.38850 0.85030 0.79126 0.77792 0.76220 1.18718 1.20650 1.18572 1.22775 0.97582 0.90712 0.91122 0.91740 0.93276 0.89172 0.86898 0.93146 0.89366 0.93180 0.89005 0.90372 0.75203 0.91688 0.90818 0.74547 0.86831 0.87226 0.92072 0.87343 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.18 71.98 0.66 -0.85 16 2 C -0.11 -1.41 2.88 -11.54 -0.03 -1.44 16 3 C -0.13 -1.80 8.82 71.98 0.63 -1.17 16 4 C 0.53 10.46 6.94 87.66 0.61 11.07 16 5 O -0.59 -16.56 16.52 -3.05 -0.05 -16.61 16 6 N -0.62 -9.52 3.32 -807.96 -2.68 -12.20 16 7 C 0.07 0.92 6.77 86.53 0.59 1.51 16 8 C 0.10 1.18 4.08 31.50 0.13 1.31 16 9 H 0.10 0.86 7.71 -2.38 -0.02 0.84 16 10 O -0.58 -7.82 13.27 -148.98 -1.98 -9.80 16 11 C -0.10 -1.13 2.90 -9.89 -0.03 -1.16 16 12 H 0.10 1.30 7.98 -2.39 -0.02 1.28 16 13 C 0.14 2.23 4.80 86.38 0.41 2.65 16 14 N -0.71 -14.00 5.43 -463.06 -2.52 -16.51 16 15 C 0.54 17.48 7.85 87.66 0.69 18.17 16 16 O -0.56 -24.10 15.86 -3.03 -0.05 -24.15 16 17 C -0.13 -4.70 6.16 71.24 0.44 -4.26 16 18 S -0.15 -8.23 20.57 -56.49 -1.16 -9.39 16 19 C -0.54 -30.11 9.50 67.95 0.65 -29.47 16 20 H 0.08 4.26 7.80 -2.91 -0.02 4.24 16 21 C 0.01 0.71 5.49 84.86 0.47 1.18 16 22 N -0.91 -55.08 13.22 21.65 0.29 -54.79 16 23 Si 1.00 42.48 29.55 68.60 2.03 44.51 16 24 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 25 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 27 C 0.10 1.03 6.30 86.54 0.54 1.57 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.11 0.94 6.54 -2.39 -0.02 0.93 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.05 0.84 7.85 -2.39 -0.02 0.83 16 35 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 1.23 7.87 -2.39 -0.02 1.21 16 37 H 0.40 2.41 9.12 -74.06 -0.68 1.74 16 38 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.07 1.27 7.98 -2.39 -0.02 1.25 16 40 H 0.42 5.22 8.41 -92.71 -0.78 4.44 16 41 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 42 H 0.11 3.54 8.14 -2.40 -0.02 3.52 16 43 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 44 H 0.11 0.67 6.49 -2.39 -0.02 0.66 16 45 H 0.09 0.88 7.76 -2.39 -0.02 0.86 16 Total: -1.00 -84.37 387.82 -0.81 -85.18 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -0.45 Total: 14.67 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 5.75 Total: -0.90 kcal Atomic # 7 Polarization: -78.60 SS G_CDS: -4.91 Total: -83.51 kcal Atomic # 8 Polarization: -48.49 SS G_CDS: -2.07 Total: -50.56 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.16 Total: -9.39 kcal Total: -84.37 -0.81 -85.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081287021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.470 kcal (2) G-P(sol) polarization free energy of solvation -84.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds