Wall clock time and date at job start Tue Mar 31 2020 07:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.91681 * 2 1 4 4 C 1.54913 * 111.00056 * 236.10515 * 2 1 3 5 5 N 1.47422 * 104.83051 * 204.91366 * 4 2 1 6 6 C 1.34781 * 125.64959 * 204.08930 * 5 4 2 7 7 O 1.21271 * 120.00115 * 4.70050 * 6 5 4 8 8 C 1.50705 * 119.99916 * 184.69837 * 6 5 4 9 9 C 1.52998 * 110.36575 * 58.97497 * 8 6 5 10 10 C 1.54193 * 110.27276 * 296.80934 * 8 6 5 11 11 C 1.53885 * 108.68801 * 268.94399 * 10 8 6 12 12 C 1.55046 * 106.66244 * 312.88850 * 11 10 8 13 13 S 1.82919 * 110.31664 * 181.14318 * 8 6 5 14 14 O 1.42101 * 109.35157 * 3.38026 * 13 8 6 15 15 O 1.42100 * 109.35202 * 230.17582 * 13 8 6 16 16 C 1.47023 * 108.70578 * 24.35381 * 5 4 2 17 17 C 1.54342 * 107.26323 * 358.58580 * 16 5 4 18 18 H 1.09000 * 110.51082 * 96.45358 * 17 16 5 19 19 N 1.46493 * 111.00099 * 219.60047 * 17 16 5 20 20 C 1.36933 * 120.00593 * 268.77901 * 19 17 16 21 21 H 1.08001 * 119.99555 * 0.02562 * 20 19 17 22 22 C 1.38811 * 120.00440 * 180.02562 * 20 19 17 23 23 N 1.31617 * 119.99757 * 179.97438 * 22 20 19 24 24 Si 1.86790 * 119.99962 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47179 * 89.99849 * 24 22 20 26 26 H 1.48501 * 109.47292 * 209.99764 * 24 22 20 27 27 H 1.48502 * 109.47178 * 329.99640 * 24 22 20 28 28 H 1.09005 * 109.46902 * 182.44811 * 1 2 3 29 29 H 1.09001 * 109.46684 * 302.44331 * 1 2 3 30 30 H 1.08993 * 109.47397 * 62.44671 * 1 2 3 31 31 H 1.08996 * 110.37082 * 86.07147 * 4 2 1 32 32 H 1.09005 * 110.36487 * 323.74556 * 4 2 1 33 33 H 1.08996 * 109.47255 * 172.56305 * 9 8 6 34 34 H 1.09006 * 109.46777 * 292.56396 * 9 8 6 35 35 H 1.09001 * 109.46653 * 52.55784 * 9 8 6 36 36 H 1.09001 * 109.61399 * 149.12323 * 10 8 6 37 37 H 1.08999 * 109.69362 * 28.81079 * 10 8 6 38 38 H 1.08998 * 110.02386 * 193.57967 * 11 10 8 39 39 H 1.08996 * 110.02802 * 72.20418 * 11 10 8 40 40 H 1.09006 * 110.78976 * 160.67911 * 12 11 10 41 41 H 1.09005 * 110.79094 * 284.14270 * 12 11 10 42 42 H 1.08998 * 109.88510 * 118.13025 * 16 5 4 43 43 H 1.09001 * 109.88497 * 239.29691 * 16 5 4 44 44 H 0.97003 * 119.99941 * 88.78163 * 19 17 16 45 45 H 0.97004 * 120.00063 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0852 -0.8065 -1.2005 5 7 3.4271 -1.2430 -0.7736 6 6 4.4476 -1.5615 -1.5944 7 8 4.3290 -1.4189 -2.7928 8 6 5.7360 -2.0948 -1.0228 9 6 5.4767 -3.3790 -0.2326 10 6 6.3992 -1.0349 -0.1204 11 6 7.3584 -0.1890 -0.9763 12 6 8.1984 -1.1841 -1.8177 13 16 6.9440 -2.4052 -2.3608 14 8 6.3893 -1.9903 -3.6016 15 8 7.4729 -3.7168 -2.2228 16 6 3.4658 -1.2794 0.6957 17 6 2.0862 -0.8079 1.2021 18 1 1.4469 -1.6633 1.4208 19 7 2.2248 0.0484 2.3825 20 6 2.1955 -0.5028 3.6357 21 1 2.0706 -1.5690 3.7538 22 6 2.3264 0.3088 4.7542 23 7 2.2977 -0.2211 5.9587 24 14 2.5417 2.1529 4.5500 25 1 1.2093 2.8085 4.5373 26 1 3.3447 2.6857 5.6799 27 1 3.2423 2.4308 3.2705 28 1 -0.3633 -1.0268 0.0439 29 1 -0.3633 0.5513 0.8673 30 1 -0.3634 0.4753 -0.9110 31 1 2.1558 -0.1719 -2.0838 32 1 1.4518 -1.6703 -1.4025 33 1 6.4278 -3.8228 0.0616 34 1 4.8934 -3.1459 0.6582 35 1 4.9241 -4.0830 -0.8548 36 1 6.9570 -1.5290 0.6752 37 1 5.6339 -0.3927 0.3155 38 1 8.0118 0.4001 -0.3328 39 1 6.7902 0.4690 -1.6337 40 1 8.6471 -0.6828 -2.6754 41 1 8.9623 -1.6612 -1.2038 42 1 3.6602 -2.2964 1.0363 43 1 4.2425 -0.6085 1.0628 44 1 2.3374 1.0060 2.2765 45 1 2.3887 0.3460 6.7404 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082800544.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:59 Heat of formation + Delta-G solvation = -72.677825 kcal Electronic energy + Delta-G solvation = -28245.484074 eV Core-core repulsion = 24391.371613 eV Total energy + Delta-G solvation = -3854.112462 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -40.47849 -38.01177 -37.14052 -36.60658 -35.94505 -34.32236 -33.07003 -31.99298 -31.11226 -28.10878 -27.25766 -26.49788 -24.66677 -23.63248 -22.29506 -21.23478 -20.36171 -19.98106 -18.59617 -17.68483 -16.99788 -16.82988 -16.42952 -16.08766 -15.51090 -15.03872 -14.96564 -14.58256 -14.39136 -14.18412 -13.78279 -13.67847 -13.33367 -13.09249 -12.90963 -12.89308 -12.64515 -12.50932 -12.18190 -12.14286 -12.03934 -12.01564 -11.75455 -11.66131 -11.45094 -11.33406 -11.15617 -10.90974 -10.72926 -10.69029 -10.48446 -10.35889 -10.10332 -9.77507 -9.67828 -9.11876 -8.50299 -7.51283 -5.94826 -3.33386 -0.14744 2.36748 2.49903 2.88866 3.22879 3.26625 3.33458 3.44951 3.83352 4.06574 4.25482 4.32014 4.39636 4.42156 4.61742 4.72600 4.77552 4.92948 4.93812 5.14613 5.17729 5.29145 5.38041 5.41238 5.42854 5.46914 5.51144 5.59850 5.63217 5.66354 5.72569 5.78651 5.85872 6.00742 6.07103 6.22452 6.28995 6.34873 6.40564 6.63152 7.52597 7.78729 8.07264 8.23563 8.99754 9.71983 9.89782 11.22643 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.015859 B = 0.004016 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.100636 B = 6971.110394 C = 7782.098692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.118 4.118 3 H 0.081 0.919 4 C 0.113 3.887 5 N -0.603 5.603 6 C 0.551 3.449 7 O -0.510 6.510 8 C -0.552 4.552 9 C -0.133 4.133 10 C -0.117 4.117 11 C -0.119 4.119 12 C -0.592 4.592 13 S 2.406 3.594 14 O -0.892 6.892 15 O -0.934 6.934 16 C 0.060 3.940 17 C 0.181 3.819 18 H 0.078 0.922 19 N -0.734 5.734 20 C -0.255 4.255 21 H 0.093 0.907 22 C 0.012 3.988 23 N -0.927 5.927 24 Si 0.883 3.117 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.277 1.277 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.364 0.636 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.877 -0.992 -13.487 15.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.138 4.138 3 H 0.099 0.901 4 C -0.010 4.010 5 N -0.336 5.336 6 C 0.336 3.664 7 O -0.386 6.386 8 C -0.642 4.642 9 C -0.191 4.191 10 C -0.155 4.155 11 C -0.157 4.157 12 C -0.722 4.722 13 S 2.585 3.415 14 O -0.889 6.889 15 O -0.931 6.931 16 C -0.065 4.065 17 C 0.069 3.931 18 H 0.096 0.904 19 N -0.376 5.376 20 C -0.385 4.385 21 H 0.110 0.890 22 C -0.184 4.184 23 N -0.574 5.574 24 Si 0.713 3.287 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.204 1.204 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.119 0.881 39 H 0.105 0.895 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.197 0.803 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.814 -1.718 -14.686 16.723 hybrid contribution 0.337 1.884 0.929 2.127 sum 8.151 0.166 -13.757 15.991 Atomic orbital electron populations 1.21611 0.93541 1.02225 1.01795 1.22697 0.96659 0.99625 0.94828 0.90056 1.22321 0.82330 0.98447 0.97869 1.48330 1.11792 1.65566 1.07931 1.18847 0.83066 0.78619 0.85915 1.90967 1.81210 1.53304 1.13119 1.30402 1.09790 1.05763 1.18290 1.21771 1.04646 0.91525 1.01145 1.22350 0.99373 0.96063 0.97755 1.22201 0.97049 0.97667 0.98830 1.30699 1.14644 1.15697 1.11137 1.09075 0.78333 0.76979 0.77158 1.93708 1.75633 1.82723 1.36789 1.93591 1.77658 1.34979 1.86832 1.23674 1.03020 1.02126 0.77700 1.21244 0.91897 0.93897 0.86038 0.90399 1.42704 1.88010 1.05008 1.01839 1.19056 1.43567 0.94629 0.81212 0.88971 1.24666 1.01343 0.97381 0.95060 1.69692 1.56045 1.34600 0.97017 0.86604 0.78034 0.87118 0.76987 1.20902 1.21648 1.20371 0.92423 0.91506 0.93007 0.90487 0.91184 0.89651 0.88738 0.91066 0.88338 0.87496 0.88072 0.89528 0.84447 0.84450 0.90828 0.90306 0.80255 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 9.29 37.16 0.35 -1.29 16 2 C -0.12 -1.59 3.27 -88.47 -0.29 -1.88 16 3 H 0.08 1.13 8.01 -51.93 -0.42 0.71 16 4 C 0.11 1.49 6.40 -2.53 -0.02 1.47 16 5 N -0.60 -8.41 3.29 -170.51 -0.56 -8.97 16 6 C 0.55 8.09 6.60 -10.98 -0.07 8.02 16 7 O -0.51 -9.20 14.18 -18.62 -0.26 -9.46 16 8 C -0.55 -6.46 0.74 -91.15 -0.07 -6.53 16 9 C -0.13 -1.43 7.76 37.16 0.29 -1.14 16 10 C -0.12 -1.11 5.05 -25.65 -0.13 -1.24 16 11 C -0.12 -0.96 6.47 -25.19 -0.16 -1.13 16 12 C -0.59 -4.58 7.31 38.24 0.28 -4.30 16 13 S 2.41 28.93 5.78 -107.50 -0.62 28.31 16 14 O -0.89 -14.47 15.22 -67.20 -1.02 -15.49 16 15 O -0.93 -12.97 17.01 -57.71 -0.98 -13.95 16 16 C 0.06 0.86 5.26 -3.05 -0.02 0.84 16 17 C 0.18 2.91 3.07 -66.09 -0.20 2.71 16 18 H 0.08 1.30 7.96 -51.93 -0.41 0.89 16 19 N -0.73 -14.88 4.97 -51.65 -0.26 -15.13 16 20 C -0.26 -6.37 10.44 -15.06 -0.16 -6.52 16 21 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 22 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 23 N -0.93 -27.04 13.97 55.49 0.78 -26.27 16 24 Si 0.88 20.24 27.74 -169.99 -4.71 15.53 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.28 -5.91 6.52 56.52 0.37 -5.54 16 28 H 0.06 0.67 8.11 -51.93 -0.42 0.25 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 1.02 7.99 -51.93 -0.42 0.60 16 32 H 0.07 0.86 8.04 -51.93 -0.42 0.44 16 33 H 0.08 0.78 7.71 -51.93 -0.40 0.38 16 34 H 0.09 1.00 4.89 -51.93 -0.25 0.75 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.10 0.74 7.86 -51.93 -0.41 0.33 16 37 H 0.11 1.14 4.89 -51.93 -0.25 0.89 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.14 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.14 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.07 1.01 5.44 -51.93 -0.28 0.73 16 43 H 0.08 1.16 5.51 -51.93 -0.29 0.87 16 44 H 0.36 7.36 5.62 -40.82 -0.23 7.13 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 355.44 15.07 5.36 5.36 Total: -1.00 -34.32 355.44 -9.34 -43.66 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -6.75 Total: 7.17 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -0.30 Total: -10.75 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: -0.04 Total: -50.37 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -2.27 Total: -38.90 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.71 Total: 15.53 kcal Atomic # 16 Polarization: 28.93 SS G_CDS: -0.62 Total: 28.31 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.32 -9.34 -43.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082800544.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.020 kcal (2) G-P(sol) polarization free energy of solvation -34.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds