Wall clock time and date at job start Tue Mar 31 2020 05:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46941 * 2 1 4 4 C 1.50700 * 109.47193 * 120.00091 * 2 1 3 5 5 O 1.21280 * 120.00079 * 114.89598 * 4 2 1 6 6 N 1.34777 * 119.99782 * 294.89644 * 4 2 1 7 7 C 1.46627 * 134.55102 * 355.47219 * 6 4 2 8 8 C 1.54650 * 85.48197 * 153.44957 * 7 6 4 9 9 H 1.08992 * 114.43743 * 140.46880 * 8 7 6 10 10 C 1.53010 * 110.84029 * 270.85384 * 8 7 6 11 11 C 1.53903 * 108.69859 * 145.03820 * 10 8 7 12 12 N 1.46619 * 107.38442 * 299.55842 * 11 10 8 13 13 C 1.36942 * 119.88546 * 238.54343 * 12 11 10 14 14 H 1.07994 * 119.99466 * 148.22618 * 13 12 11 15 15 C 1.38810 * 120.00028 * 328.21806 * 13 12 11 16 16 N 1.31619 * 120.00142 * 334.77524 * 15 13 12 17 17 Si 1.86796 * 119.99854 * 154.78105 * 15 13 12 18 18 H 1.48497 * 109.47244 * 180.02562 * 17 15 13 19 19 H 1.48501 * 109.47117 * 59.99736 * 17 15 13 20 20 H 1.48500 * 109.46932 * 300.00117 * 17 15 13 21 21 C 1.45677 * 120.21796 * 58.27322 * 12 11 10 22 22 C 1.46820 * 135.01083 * 175.88636 * 6 4 2 23 23 H 1.09007 * 111.56297 * 95.15127 * 22 6 4 24 24 S 1.81403 * 109.47133 * 240.00093 * 2 1 3 25 25 C 1.81398 * 101.91967 * 59.99745 * 24 2 1 26 26 O 1.42096 * 108.57877 * 174.48459 * 24 2 1 27 27 O 1.42101 * 108.57562 * 305.51022 * 24 2 1 28 28 H 1.09003 * 109.47060 * 304.14591 * 1 2 3 29 29 H 1.08995 * 109.47431 * 64.14568 * 1 2 3 30 30 H 1.09009 * 109.47162 * 184.14858 * 1 2 3 31 31 H 1.09000 * 109.47184 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46966 * 299.99940 * 3 2 1 33 33 H 1.09001 * 109.47239 * 60.00169 * 3 2 1 34 34 H 1.09003 * 113.37955 * 39.41900 * 7 6 4 35 35 H 1.08997 * 114.62472 * 267.62344 * 7 6 4 36 36 H 1.09005 * 109.47761 * 263.88259 * 10 8 7 37 37 H 1.09001 * 109.47556 * 23.89715 * 10 8 7 38 38 H 1.09001 * 109.04654 * 180.68784 * 11 10 8 39 39 H 1.09000 * 111.06821 * 59.57109 * 11 10 8 40 40 H 0.97001 * 120.00351 * 354.01344 * 16 15 13 41 41 H 1.09000 * 108.71700 * 82.02066 * 21 12 11 42 42 H 1.09007 * 108.71043 * 200.04051 * 21 12 11 43 43 H 1.08997 * 109.47451 * 60.00262 * 25 24 2 44 44 H 1.09001 * 109.47041 * 179.97438 * 25 24 2 45 45 H 1.08994 * 109.47463 * 300.00098 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.6513 -1.7477 1.1216 6 7 1.7937 -0.1931 2.4519 7 6 1.1746 1.0421 2.9428 8 6 0.8426 0.2260 4.2137 9 1 0.9592 0.7771 5.1468 10 6 -0.5113 -0.4729 4.0736 11 6 -0.4412 -1.8328 4.7909 12 7 0.6117 -2.6179 4.1394 13 6 0.3104 -3.8299 3.5774 14 1 0.8522 -4.1714 2.7079 15 6 -0.6912 -4.6192 4.1255 16 7 -1.0069 -4.4931 5.3970 17 14 -1.5911 -5.8606 3.0584 18 1 -2.6072 -6.5713 3.8755 19 1 -0.6188 -6.8418 2.5134 20 1 -2.2631 -5.1549 1.9378 21 6 1.9761 -2.1104 4.0827 22 6 2.0504 -0.6259 3.8311 23 1 2.9783 -0.2038 4.2173 24 16 2.1346 -0.8551 -1.4812 25 6 1.4228 0.1515 -2.8118 26 8 3.5496 -0.7330 -1.5285 27 8 1.5479 -2.1485 -1.5284 28 1 -0.3633 0.5768 0.8505 29 1 -0.3634 0.4481 -0.9247 30 1 -0.3634 -1.0251 0.0744 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 0.2968 1.3430 2.3709 35 1 1.8718 1.8619 3.1157 36 1 -1.2845 0.1348 4.5437 37 1 -0.7448 -0.6044 3.0170 38 1 -1.3995 -2.3411 4.6840 39 1 -0.2063 -1.7066 5.8477 40 1 -0.4833 -3.9128 5.9715 41 1 2.4705 -2.3300 5.0290 42 1 2.5087 -2.6276 3.2845 43 1 1.7892 1.1747 -2.7292 44 1 1.7158 -0.2621 -3.7767 45 1 0.3360 0.1470 -2.7291 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084698439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:23 Heat of formation + Delta-G solvation = -32.332649 kcal Electronic energy + Delta-G solvation = -29091.957315 eV Core-core repulsion = 25239.594351 eV Total energy + Delta-G solvation = -3852.362964 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.01303 -38.40025 -37.00121 -35.98855 -35.67764 -35.16092 -31.75888 -31.00709 -29.79629 -28.68643 -27.81536 -26.97369 -24.19868 -23.63835 -23.14689 -21.12314 -20.32950 -18.66270 -17.96192 -17.54605 -17.00804 -16.59730 -16.10268 -15.88446 -15.67731 -15.20448 -14.57897 -14.25906 -14.19133 -13.70458 -13.53878 -13.50023 -13.44961 -13.28174 -13.09230 -12.89386 -12.59902 -12.50583 -12.26738 -12.00774 -11.97750 -11.87522 -11.81993 -11.64673 -11.27007 -11.06182 -10.87398 -10.64602 -10.62995 -10.45697 -10.10447 -9.92635 -9.90854 -9.45772 -9.16116 -8.50844 -8.25936 -6.78294 -5.98938 -3.17644 -0.17739 2.60201 2.68216 2.80364 3.60259 3.60416 3.65159 3.79589 3.85599 4.11272 4.28582 4.45066 4.47057 4.54684 4.67826 4.81174 4.96009 5.03598 5.06670 5.11426 5.20498 5.22247 5.27443 5.38179 5.43759 5.45121 5.57747 5.64816 5.67309 5.80037 5.85724 5.92835 6.04240 6.30039 6.36974 6.45973 6.69212 6.88472 7.01525 7.17717 7.86464 8.19021 8.23303 8.68898 9.22324 9.93804 10.33526 11.28704 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013594 B = 0.005330 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.272894 B = 5252.347944 C = 6415.603005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.571 4.571 3 C -0.141 4.141 4 C 0.575 3.425 5 O -0.520 6.520 6 N -0.613 5.613 7 C 0.089 3.911 8 C -0.107 4.107 9 H 0.090 0.910 10 C -0.119 4.119 11 C 0.151 3.849 12 N -0.588 5.588 13 C -0.343 4.343 14 H 0.055 0.945 15 C -0.021 4.021 16 N -0.916 5.916 17 Si 1.059 2.941 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.293 1.293 21 C 0.140 3.860 22 C 0.133 3.867 23 H 0.081 0.919 24 S 2.450 3.550 25 C -0.666 4.666 26 O -0.926 6.926 27 O -0.911 6.911 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.023 0.977 40 H 0.267 0.733 41 H 0.020 0.980 42 H 0.075 0.925 43 H 0.129 0.871 44 H 0.132 0.868 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.815 19.534 -10.512 22.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.660 4.660 3 C -0.199 4.199 4 C 0.361 3.639 5 O -0.396 6.396 6 N -0.347 5.347 7 C -0.034 4.034 8 C -0.126 4.126 9 H 0.108 0.892 10 C -0.158 4.158 11 C 0.025 3.975 12 N -0.312 5.312 13 C -0.473 4.473 14 H 0.073 0.927 15 C -0.223 4.223 16 N -0.556 5.556 17 Si 0.889 3.111 18 H -0.212 1.212 19 H -0.218 1.218 20 H -0.220 1.220 21 C 0.014 3.986 22 C 0.030 3.970 23 H 0.099 0.901 24 S 2.626 3.374 25 C -0.815 4.815 26 O -0.923 6.923 27 O -0.908 6.908 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.041 0.959 40 H 0.077 0.923 41 H 0.037 0.963 42 H 0.093 0.907 43 H 0.148 0.852 44 H 0.150 0.850 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.485 17.002 -10.840 20.219 hybrid contribution 0.859 2.092 0.002 2.262 sum 2.344 19.095 -10.839 22.081 Atomic orbital electron populations 1.21805 0.87691 1.05792 1.04280 1.30447 1.08471 1.10198 1.16932 1.21869 1.02790 0.90292 1.04968 1.18490 0.79084 0.84300 0.82033 1.90854 1.40560 1.23067 1.85142 1.49282 1.59682 1.21398 1.04347 1.23531 0.96979 0.88612 0.94276 1.22966 0.96860 0.95979 0.96781 0.89233 1.22083 0.93023 0.98908 1.01822 1.21005 0.94473 0.88992 0.93078 1.43557 1.01665 1.18698 1.67246 1.20010 1.22825 0.95319 1.09110 0.92691 1.25798 0.99943 0.99367 0.97162 1.70793 1.43547 1.37987 1.03307 0.83605 0.76544 0.75981 0.74941 1.21199 1.21829 1.22048 1.20194 0.89023 0.89820 0.99600 1.22518 0.97285 0.99048 0.78150 0.90118 1.07548 0.76061 0.76535 0.77246 1.30474 1.14439 1.16763 1.19821 1.93556 1.26702 1.86661 1.85387 1.93617 1.79105 1.33153 1.84878 0.89688 0.90639 0.89294 0.90123 0.90421 0.89626 0.90069 0.89912 0.92692 0.91771 0.90191 0.95884 0.92268 0.96262 0.90723 0.85234 0.84974 0.84976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.19 37.16 0.30 -1.18 16 2 C -0.57 -7.28 0.64 -91.77 -0.06 -7.34 16 3 C -0.14 -1.17 8.04 37.16 0.30 -0.88 16 4 C 0.57 10.38 6.65 -10.99 -0.07 10.31 16 5 O -0.52 -12.09 14.84 2.24 0.03 -12.05 16 6 N -0.61 -9.76 3.18 -180.38 -0.57 -10.34 16 7 C 0.09 0.99 5.55 -3.65 -0.02 0.97 16 8 C -0.11 -1.48 4.36 -90.09 -0.39 -1.88 16 9 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 10 C -0.12 -2.00 5.70 -26.26 -0.15 -2.15 16 11 C 0.15 3.37 4.76 -3.51 -0.02 3.35 16 12 N -0.59 -14.89 2.78 -174.58 -0.49 -15.38 16 13 C -0.34 -10.06 9.36 -15.06 -0.14 -10.20 16 14 H 0.06 1.73 7.92 -52.49 -0.42 1.32 16 15 C -0.02 -0.61 4.62 -17.43 -0.08 -0.69 16 16 N -0.92 -27.65 12.48 55.49 0.69 -26.96 16 17 Si 1.06 26.63 29.99 -169.99 -5.10 21.53 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 C 0.14 3.14 6.19 -5.61 -0.03 3.11 16 22 C 0.13 2.25 4.27 -69.59 -0.30 1.96 16 23 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 24 S 2.45 34.34 3.66 -107.50 -0.39 33.95 16 25 C -0.67 -4.76 9.72 101.05 0.98 -3.78 16 26 O -0.93 -15.75 17.86 -58.24 -1.04 -16.79 16 27 O -0.91 -17.15 17.73 -60.78 -1.08 -18.23 16 28 H 0.08 0.83 5.87 -51.93 -0.30 0.52 16 29 H 0.07 0.48 6.36 -51.93 -0.33 0.15 16 30 H 0.09 1.23 8.14 -51.92 -0.42 0.80 16 31 H 0.08 0.72 8.06 -51.93 -0.42 0.30 16 32 H 0.08 0.35 6.56 -51.93 -0.34 0.01 16 33 H 0.08 0.61 5.49 -51.93 -0.29 0.33 16 34 H 0.08 0.76 5.65 -51.93 -0.29 0.47 16 35 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 1.15 7.67 -51.93 -0.40 0.76 16 38 H 0.08 2.04 6.36 -51.93 -0.33 1.71 16 39 H 0.02 0.52 8.01 -51.93 -0.42 0.10 16 40 H 0.27 8.06 7.01 -40.82 -0.29 7.78 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 1.90 6.40 -51.92 -0.33 1.57 16 43 H 0.13 0.56 6.87 -51.93 -0.36 0.21 16 44 H 0.13 0.81 8.14 -51.92 -0.42 0.39 16 45 H 0.13 0.67 6.77 -51.93 -0.35 0.32 16 LS Contribution 353.82 15.07 5.33 5.33 Total: -1.00 -40.00 353.82 -8.90 -48.90 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -6.61 Total: -1.57 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 0.32 Total: -8.40 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: -0.37 Total: -52.67 kcal Atomic # 8 Polarization: -44.99 SS G_CDS: -2.08 Total: -47.07 kcal Atomic # 14 Polarization: 26.63 SS G_CDS: -5.10 Total: 21.53 kcal Atomic # 16 Polarization: 34.34 SS G_CDS: -0.39 Total: 33.95 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -40.00 -8.90 -48.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084698439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.571 kcal (2) G-P(sol) polarization free energy of solvation -40.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds