Wall clock time and date at job start Tue Mar 31 2020 05:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46941 * 2 1 4 4 C 1.50700 * 109.47193 * 120.00091 * 2 1 3 5 5 O 1.21280 * 120.00079 * 114.89598 * 4 2 1 6 6 N 1.34777 * 119.99782 * 294.89644 * 4 2 1 7 7 C 1.46627 * 134.55102 * 355.47219 * 6 4 2 8 8 C 1.54650 * 85.48197 * 153.44957 * 7 6 4 9 9 H 1.08992 * 114.43743 * 140.46880 * 8 7 6 10 10 C 1.53010 * 110.84029 * 270.85384 * 8 7 6 11 11 C 1.53903 * 108.69859 * 145.03820 * 10 8 7 12 12 N 1.46619 * 107.38442 * 299.55842 * 11 10 8 13 13 C 1.36942 * 119.88546 * 238.54343 * 12 11 10 14 14 H 1.07994 * 119.99466 * 148.22618 * 13 12 11 15 15 C 1.38810 * 120.00028 * 328.21806 * 13 12 11 16 16 N 1.31619 * 120.00142 * 334.77524 * 15 13 12 17 17 Si 1.86796 * 119.99854 * 154.78105 * 15 13 12 18 18 H 1.48497 * 109.47244 * 180.02562 * 17 15 13 19 19 H 1.48501 * 109.47117 * 59.99736 * 17 15 13 20 20 H 1.48500 * 109.46932 * 300.00117 * 17 15 13 21 21 C 1.45677 * 120.21796 * 58.27322 * 12 11 10 22 22 C 1.46820 * 135.01083 * 175.88636 * 6 4 2 23 23 H 1.09007 * 111.56297 * 95.15127 * 22 6 4 24 24 S 1.81403 * 109.47133 * 240.00093 * 2 1 3 25 25 C 1.81398 * 101.91967 * 59.99745 * 24 2 1 26 26 O 1.42096 * 108.57877 * 174.48459 * 24 2 1 27 27 O 1.42101 * 108.57562 * 305.51022 * 24 2 1 28 28 H 1.09003 * 109.47060 * 304.14591 * 1 2 3 29 29 H 1.08995 * 109.47431 * 64.14568 * 1 2 3 30 30 H 1.09009 * 109.47162 * 184.14858 * 1 2 3 31 31 H 1.09000 * 109.47184 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46966 * 299.99940 * 3 2 1 33 33 H 1.09001 * 109.47239 * 60.00169 * 3 2 1 34 34 H 1.09003 * 113.37955 * 39.41900 * 7 6 4 35 35 H 1.08997 * 114.62472 * 267.62344 * 7 6 4 36 36 H 1.09005 * 109.47761 * 263.88259 * 10 8 7 37 37 H 1.09001 * 109.47556 * 23.89715 * 10 8 7 38 38 H 1.09001 * 109.04654 * 180.68784 * 11 10 8 39 39 H 1.09000 * 111.06821 * 59.57109 * 11 10 8 40 40 H 0.97001 * 120.00351 * 354.01344 * 16 15 13 41 41 H 1.09000 * 108.71700 * 82.02066 * 21 12 11 42 42 H 1.09007 * 108.71043 * 200.04051 * 21 12 11 43 43 H 1.08997 * 109.47451 * 60.00262 * 25 24 2 44 44 H 1.09001 * 109.47041 * 179.97438 * 25 24 2 45 45 H 1.08994 * 109.47463 * 300.00098 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.6513 -1.7477 1.1216 6 7 1.7937 -0.1931 2.4519 7 6 1.1746 1.0421 2.9428 8 6 0.8426 0.2260 4.2137 9 1 0.9592 0.7771 5.1468 10 6 -0.5113 -0.4729 4.0736 11 6 -0.4412 -1.8328 4.7909 12 7 0.6117 -2.6179 4.1394 13 6 0.3104 -3.8299 3.5774 14 1 0.8522 -4.1714 2.7079 15 6 -0.6912 -4.6192 4.1255 16 7 -1.0069 -4.4931 5.3970 17 14 -1.5911 -5.8606 3.0584 18 1 -2.6072 -6.5713 3.8755 19 1 -0.6188 -6.8418 2.5134 20 1 -2.2631 -5.1549 1.9378 21 6 1.9761 -2.1104 4.0827 22 6 2.0504 -0.6259 3.8311 23 1 2.9783 -0.2038 4.2173 24 16 2.1346 -0.8551 -1.4812 25 6 1.4228 0.1515 -2.8118 26 8 3.5496 -0.7330 -1.5285 27 8 1.5479 -2.1485 -1.5284 28 1 -0.3633 0.5768 0.8505 29 1 -0.3634 0.4481 -0.9247 30 1 -0.3634 -1.0251 0.0744 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 0.2968 1.3430 2.3709 35 1 1.8718 1.8619 3.1157 36 1 -1.2845 0.1348 4.5437 37 1 -0.7448 -0.6044 3.0170 38 1 -1.3995 -2.3411 4.6840 39 1 -0.2063 -1.7066 5.8477 40 1 -0.4833 -3.9128 5.9715 41 1 2.4705 -2.3300 5.0290 42 1 2.5087 -2.6276 3.2845 43 1 1.7892 1.1747 -2.7292 44 1 1.7158 -0.2621 -3.7767 45 1 0.3360 0.1470 -2.7291 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084698439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:23 Heat of formation + Delta-G solvation = -66.395088 kcal Electronic energy + Delta-G solvation = -29093.434373 eV Core-core repulsion = 25239.594351 eV Total energy + Delta-G solvation = -3853.840022 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.26840 -39.76948 -38.14092 -37.49008 -37.08012 -36.29007 -33.65476 -32.68213 -30.64779 -29.99125 -28.61266 -28.46935 -25.81777 -25.07050 -24.47247 -22.67595 -21.63010 -19.87323 -19.65834 -18.98192 -18.27723 -17.82689 -17.33329 -16.95834 -16.90740 -16.46245 -16.17670 -15.86394 -15.50109 -15.43541 -14.95464 -14.73838 -14.33733 -14.23422 -14.12293 -14.02652 -13.76715 -13.61569 -13.43513 -13.23654 -13.13893 -13.11301 -12.94951 -12.84779 -12.66201 -12.55767 -12.48855 -12.10136 -11.96986 -11.94264 -11.79131 -11.65154 -11.40216 -11.11428 -10.67391 -10.54480 -9.73310 -8.93794 -8.30573 -5.48975 -1.12241 1.41712 1.48390 1.53889 1.63367 1.71376 1.75837 2.55727 2.69416 2.93769 3.10975 3.15707 3.33020 3.50681 3.54126 3.61577 3.84146 3.99126 4.03058 4.14976 4.22244 4.24257 4.36247 4.39424 4.48790 4.54054 4.56866 4.60580 4.63136 4.68045 4.80339 4.88890 4.94413 4.98250 5.06878 5.10924 5.12234 5.15881 5.24288 5.54596 5.82254 6.36452 6.65719 6.91331 7.06670 7.75623 8.11948 8.90954 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013594 B = 0.005330 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.272894 B = 5252.347944 C = 6415.603005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.554 4.554 3 C -0.144 4.144 4 C 0.551 3.449 5 O -0.597 6.597 6 N -0.618 5.618 7 C 0.105 3.895 8 C -0.099 4.099 9 H 0.131 0.869 10 C -0.108 4.108 11 C 0.151 3.849 12 N -0.603 5.603 13 C -0.354 4.354 14 H 0.013 0.987 15 C -0.060 4.060 16 N -0.928 5.928 17 Si 1.102 2.898 18 H -0.275 1.275 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.142 3.858 22 C 0.118 3.882 23 H 0.112 0.888 24 S 2.405 3.595 25 C -0.621 4.621 26 O -0.980 6.980 27 O -0.989 6.989 28 H 0.102 0.898 29 H 0.132 0.868 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.131 0.869 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.132 0.868 36 H 0.094 0.906 37 H 0.049 0.951 38 H 0.041 0.959 39 H 0.022 0.978 40 H 0.256 0.744 41 H 0.010 0.990 42 H 0.026 0.974 43 H 0.176 0.824 44 H 0.149 0.851 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.208 25.468 -11.855 28.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.645 4.645 3 C -0.201 4.201 4 C 0.340 3.660 5 O -0.479 6.479 6 N -0.351 5.351 7 C -0.015 4.015 8 C -0.118 4.118 9 H 0.148 0.852 10 C -0.147 4.147 11 C 0.026 3.974 12 N -0.328 5.328 13 C -0.484 4.484 14 H 0.031 0.969 15 C -0.257 4.257 16 N -0.569 5.569 17 Si 0.926 3.074 18 H -0.200 1.200 19 H -0.216 1.216 20 H -0.207 1.207 21 C 0.015 3.985 22 C 0.014 3.986 23 H 0.129 0.871 24 S 2.591 3.409 25 C -0.775 4.775 26 O -0.977 6.977 27 O -0.986 6.986 28 H 0.121 0.879 29 H 0.150 0.850 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.149 0.851 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.149 0.851 36 H 0.112 0.888 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.040 0.960 40 H 0.066 0.934 41 H 0.028 0.972 42 H 0.044 0.956 43 H 0.194 0.806 44 H 0.167 0.833 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.520 22.969 -12.126 25.978 hybrid contribution 1.513 0.267 0.442 1.599 sum 0.993 23.236 -11.684 26.027 Atomic orbital electron populations 1.21968 0.85958 1.03841 1.08099 1.30276 1.09503 1.11990 1.12761 1.22113 1.02323 0.87018 1.08685 1.19603 0.78322 0.83879 0.84240 1.90820 1.43956 1.26571 1.86529 1.49507 1.59044 1.23191 1.03321 1.23877 0.98692 0.87393 0.91566 1.22932 0.92957 0.95508 1.00407 0.85162 1.21909 0.96465 0.95984 1.00329 1.20986 0.91447 0.91492 0.93437 1.43697 1.03535 1.18215 1.67334 1.19931 1.23040 0.97547 1.07912 0.96888 1.26949 1.00466 1.00739 0.97586 1.70896 1.43726 1.38649 1.03614 0.83046 0.75870 0.74429 0.74017 1.19972 1.21636 1.20724 1.20154 0.87068 0.93928 0.97333 1.22596 1.00760 0.95140 0.80134 0.87091 1.08244 0.75650 0.77284 0.79709 1.30134 1.15796 1.16583 1.15000 1.93482 1.30077 1.87590 1.86536 1.93527 1.79672 1.38980 1.86419 0.87931 0.84960 0.93914 0.91286 0.85108 0.87471 0.87164 0.85076 0.88798 0.93219 0.94037 0.96036 0.93428 0.97195 0.95582 0.80611 0.83257 0.81562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 8.19 71.98 0.59 -2.01 16 2 C -0.55 -13.16 0.64 -11.54 -0.01 -13.16 16 3 C -0.14 -1.64 8.04 71.98 0.58 -1.06 16 4 C 0.55 20.56 6.65 87.66 0.58 21.15 16 5 O -0.60 -30.84 14.84 0.14 0.00 -30.83 16 6 N -0.62 -18.96 3.18 -842.98 -2.68 -21.64 16 7 C 0.10 1.74 5.55 86.56 0.48 2.22 16 8 C -0.10 -2.37 4.36 -10.28 -0.04 -2.41 16 9 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 10 C -0.11 -3.39 5.70 30.90 0.18 -3.21 16 11 C 0.15 6.93 4.76 86.66 0.41 7.34 16 12 N -0.60 -32.55 2.78 -706.25 -1.96 -34.51 16 13 C -0.35 -22.43 9.36 84.03 0.79 -21.64 16 14 H 0.01 0.93 7.92 -2.91 -0.02 0.91 16 15 C -0.06 -3.66 4.62 84.86 0.39 -3.26 16 16 N -0.93 -58.26 12.48 21.65 0.27 -57.99 16 17 Si 1.10 56.24 29.99 68.60 2.06 58.30 16 18 H -0.27 -13.46 7.11 99.48 0.71 -12.75 16 19 H -0.29 -14.60 7.11 99.48 0.71 -13.90 16 20 H -0.28 -13.67 7.11 99.48 0.71 -12.97 16 21 C 0.14 6.82 6.19 85.81 0.53 7.35 16 22 C 0.12 3.91 4.27 43.74 0.19 4.10 16 23 H 0.11 3.02 8.14 -2.38 -0.02 3.00 16 24 S 2.41 68.34 3.66 -56.49 -0.21 68.14 16 25 C -0.62 -5.55 9.72 113.37 1.10 -4.45 16 26 O -0.98 -35.33 17.86 -126.98 -2.27 -37.59 16 27 O -0.99 -40.88 17.73 -124.55 -2.21 -43.09 16 28 H 0.10 1.49 5.87 -2.39 -0.01 1.48 16 29 H 0.13 0.84 6.36 -2.39 -0.02 0.82 16 30 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.07 1.01 8.06 -2.39 -0.02 0.99 16 32 H 0.13 0.09 6.56 -2.39 -0.02 0.08 16 33 H 0.11 0.77 5.49 -2.39 -0.01 0.76 16 34 H 0.11 1.27 5.65 -2.39 -0.01 1.26 16 35 H 0.13 1.11 8.10 -2.39 -0.02 1.09 16 36 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.05 1.70 7.67 -2.39 -0.02 1.69 16 38 H 0.04 2.19 6.36 -2.39 -0.02 2.17 16 39 H 0.02 0.98 8.01 -2.39 -0.02 0.96 16 40 H 0.26 16.22 7.01 -92.71 -0.65 15.57 16 41 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.03 1.48 6.40 -2.38 -0.02 1.46 16 43 H 0.18 0.09 6.87 -2.39 -0.02 0.07 16 44 H 0.15 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.17 0.51 6.77 -2.39 -0.02 0.49 16 Total: -1.00 -107.82 353.82 -0.11 -107.93 By element: Atomic # 1 Polarization: -0.77 SS G_CDS: 1.12 Total: 0.35 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: 5.77 Total: -9.06 kcal Atomic # 7 Polarization: -109.77 SS G_CDS: -4.37 Total: -114.14 kcal Atomic # 8 Polarization: -107.04 SS G_CDS: -4.47 Total: -111.51 kcal Atomic # 14 Polarization: 56.24 SS G_CDS: 2.06 Total: 58.30 kcal Atomic # 16 Polarization: 68.34 SS G_CDS: -0.21 Total: 68.14 kcal Total: -107.82 -0.11 -107.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084698439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.539 kcal (2) G-P(sol) polarization free energy of solvation -107.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -107.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds