Wall clock time and date at job start Tue Mar 31 2020 05:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00218 * 2 1 4 4 H 1.48501 * 109.46922 * 90.00236 * 3 2 1 5 5 H 1.48496 * 109.47354 * 210.00432 * 3 2 1 6 6 H 1.48501 * 109.47428 * 330.00540 * 3 2 1 7 7 C 1.38812 * 119.99535 * 180.28285 * 2 1 3 8 8 H 1.07999 * 120.00285 * 359.97438 * 7 2 1 9 9 N 1.36935 * 119.99632 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 H 1.09005 * 112.85148 * 336.19457 * 10 9 7 12 12 C 1.53780 * 113.61763 * 107.50645 * 10 9 7 13 13 C 1.53774 * 87.08427 * 139.98115 * 12 10 9 14 14 H 1.09002 * 113.61738 * 89.11855 * 13 12 10 15 15 C 1.53000 * 113.61399 * 220.02016 * 13 12 10 16 16 N 1.46508 * 109.46878 * 272.49708 * 15 13 12 17 17 C 1.34774 * 119.99763 * 180.02562 * 16 15 13 18 18 O 1.21283 * 120.00393 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99985 * 180.02562 * 17 16 15 20 20 H 1.08997 * 109.38487 * 60.20376 * 19 17 16 21 21 C 1.52591 * 109.38500 * 179.97438 * 19 17 16 22 22 C 1.52588 * 110.64055 * 190.14630 * 21 19 17 23 23 C 1.53044 * 109.98211 * 290.00825 * 22 21 19 24 24 S 1.81674 * 108.99761 * 63.65310 * 23 22 21 25 25 O 1.42098 * 108.66503 * 60.02678 * 24 23 22 26 26 O 1.42101 * 108.66177 * 191.37235 * 24 23 22 27 27 C 1.53033 * 109.38091 * 300.52123 * 19 17 16 28 28 C 1.53777 * 87.08108 * 334.56566 * 13 12 10 29 29 H 0.97005 * 119.99717 * 359.71788 * 1 2 3 30 30 H 0.97004 * 120.00593 * 359.97438 * 9 7 2 31 31 H 1.09001 * 113.61264 * 254.53115 * 12 10 9 32 32 H 1.09001 * 113.61258 * 25.42731 * 12 10 9 33 33 H 1.08996 * 109.47152 * 32.49468 * 15 13 12 34 34 H 1.08997 * 109.47566 * 152.49852 * 15 13 12 35 35 H 0.96996 * 120.00200 * 359.97438 * 16 15 13 36 36 H 1.08996 * 109.24205 * 310.44022 * 21 19 17 37 37 H 1.08998 * 109.24003 * 69.84321 * 21 19 17 38 38 H 1.08991 * 109.39054 * 50.16660 * 22 21 19 39 39 H 1.09000 * 109.38386 * 169.86008 * 22 21 19 40 40 H 1.08997 * 109.54703 * 183.50247 * 23 22 21 41 41 H 1.08999 * 109.55140 * 303.70061 * 23 22 21 42 42 H 1.08999 * 109.55411 * 296.04526 * 27 19 17 43 43 H 1.08998 * 109.55229 * 56.34284 * 27 19 17 44 44 H 1.08991 * 113.61586 * 270.88305 * 28 13 12 45 45 H 1.09004 * 113.69110 * 139.99082 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5478 1.4401 -0.7001 6 1 1.4478 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0059 8 1 1.4702 -2.1375 -0.0101 9 7 3.3796 -1.2022 -0.0065 10 6 4.1120 -2.4709 -0.0122 11 1 3.5279 -3.2988 0.3900 12 6 4.7866 -2.7868 -1.3575 13 6 5.9842 -3.3072 -0.5454 14 1 5.9125 -4.3645 -0.2902 15 6 7.3409 -2.9298 -1.1437 16 7 7.7429 -3.9446 -2.1210 17 6 8.9125 -3.8204 -2.7789 18 8 9.6320 -2.8683 -2.5625 19 6 9.3259 -4.8640 -3.7846 20 1 8.5824 -4.9144 -4.5800 21 6 10.6790 -4.4857 -4.3799 22 6 11.0099 -5.3775 -5.5730 23 6 11.3065 -6.8010 -5.0955 24 16 9.8090 -7.4938 -4.3352 25 8 8.7720 -7.5111 -5.3066 26 8 10.1551 -8.6973 -3.6636 27 6 9.4203 -6.2260 -3.0933 28 6 5.5262 -2.3685 0.5832 29 1 -0.4850 0.8401 0.0041 30 1 3.8647 -0.3622 -0.0031 31 1 4.2772 -3.5621 -1.9299 32 1 5.0131 -1.9011 -1.9510 33 1 7.2635 -1.9609 -1.6370 34 1 8.0856 -2.8748 -0.3498 35 1 7.1677 -4.7062 -2.2938 36 1 10.6501 -3.4460 -4.7058 37 1 11.4511 -4.6018 -3.6194 38 1 10.1623 -5.3949 -6.2579 39 1 11.8832 -4.9803 -6.0904 40 1 11.6022 -7.4165 -5.9451 41 1 12.1128 -6.7794 -4.3625 42 1 10.2085 -6.1994 -2.3409 43 1 8.4680 -6.4607 -2.6180 44 1 5.9550 -1.3685 0.5204 45 1 5.6136 -2.8048 1.5783 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086214263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:42 Heat of formation + Delta-G solvation = -113.794431 kcal Electronic energy + Delta-G solvation = -26027.671519 eV Core-core repulsion = 22171.776108 eV Total energy + Delta-G solvation = -3855.895412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.23391 -39.99843 -38.23358 -37.34410 -37.07048 -36.13757 -35.07761 -33.18716 -32.61048 -28.92214 -28.63338 -26.48079 -25.91778 -24.99528 -22.72385 -22.21952 -21.28635 -20.62602 -19.83228 -19.36977 -18.57687 -17.53668 -17.35679 -17.19600 -16.72931 -16.48124 -16.41125 -16.13666 -15.84175 -15.50548 -15.10230 -14.90376 -14.70213 -14.39816 -14.10212 -13.97283 -13.85143 -13.26395 -13.25075 -13.19431 -13.09187 -13.05838 -12.88109 -12.70140 -12.43086 -12.36176 -12.14685 -12.00914 -11.89182 -11.87570 -11.68977 -11.59421 -11.29081 -11.12947 -10.89074 -10.63024 -10.08476 -9.27352 -8.03514 -5.35951 -0.95204 1.36716 1.39577 1.46814 1.49305 1.76073 2.16164 2.47183 2.72017 2.94562 3.26769 3.46833 3.49976 3.58904 3.62164 3.71305 3.78325 3.83914 3.91194 4.08227 4.14731 4.27429 4.29418 4.37443 4.39659 4.55552 4.61723 4.70694 4.78594 4.82587 4.94501 4.96655 5.03001 5.07797 5.17568 5.21326 5.29550 5.33698 5.43898 5.65070 5.77506 6.22491 6.51427 7.07407 7.19738 7.85763 8.03283 9.18071 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.023594 B = 0.002143 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.443715 B =13061.856619 C =13472.427607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.068 4.068 3 Si 0.955 3.045 4 H -0.278 1.278 5 H -0.254 1.254 6 H -0.297 1.297 7 C -0.231 4.231 8 H 0.059 0.941 9 N -0.744 5.744 10 C 0.144 3.856 11 H 0.077 0.923 12 C -0.156 4.156 13 C -0.099 4.099 14 H 0.120 0.880 15 C 0.136 3.864 16 N -0.717 5.717 17 C 0.521 3.479 18 O -0.576 6.576 19 C -0.095 4.095 20 H 0.130 0.870 21 C -0.126 4.126 22 C -0.110 4.110 23 C -0.587 4.587 24 S 2.427 3.573 25 O -0.972 6.972 26 O -0.982 6.982 27 C -0.598 4.598 28 C -0.135 4.135 29 H 0.257 0.743 30 H 0.365 0.635 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.414 0.586 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.110 0.890 40 H 0.153 0.847 41 H 0.160 0.840 42 H 0.160 0.840 43 H 0.152 0.848 44 H 0.077 0.923 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.620 -15.179 -9.993 34.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.259 4.259 3 Si 0.782 3.218 4 H -0.204 1.204 5 H -0.178 1.178 6 H -0.224 1.224 7 C -0.362 4.362 8 H 0.077 0.923 9 N -0.385 5.385 10 C 0.035 3.965 11 H 0.095 0.905 12 C -0.197 4.197 13 C -0.118 4.118 14 H 0.138 0.862 15 C 0.012 3.988 16 N -0.369 5.369 17 C 0.307 3.693 18 O -0.456 6.456 19 C -0.117 4.117 20 H 0.148 0.852 21 C -0.163 4.163 22 C -0.148 4.148 23 C -0.719 4.719 24 S 2.614 3.386 25 O -0.969 6.969 26 O -0.979 6.979 27 C -0.728 4.728 28 C -0.175 4.175 29 H 0.066 0.934 30 H 0.198 0.802 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.251 0.749 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.128 0.872 40 H 0.171 0.829 41 H 0.178 0.822 42 H 0.178 0.822 43 H 0.170 0.830 44 H 0.095 0.905 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 29.411 -15.410 -10.001 34.677 hybrid contribution -0.311 1.584 0.285 1.639 sum 29.101 -13.826 -9.716 33.651 Atomic orbital electron populations 1.69889 1.07120 1.26612 1.59899 1.25529 0.96138 1.01290 1.02920 0.85410 0.78541 0.79736 0.78072 1.20403 1.17834 1.22434 1.19125 0.82879 0.93429 1.40816 0.92344 1.42795 1.02419 1.04080 1.89248 1.21949 0.90948 0.87942 0.95641 0.90501 1.23754 0.97121 1.00429 0.98386 1.22486 0.91888 1.00868 0.96523 0.86241 1.21266 0.95374 0.91025 0.91103 1.46000 1.21421 1.27505 1.41937 1.20741 0.80691 0.86516 0.81394 1.90711 1.53864 1.34448 1.66548 1.21119 1.02112 0.90994 0.97431 0.85201 1.21599 0.94457 1.01823 0.98460 1.21342 1.05379 0.90184 0.97880 1.30129 1.19131 1.07933 1.14706 1.07587 0.78234 0.76183 0.76646 1.93563 1.56219 1.87254 1.59880 1.93566 1.84897 1.43635 1.75785 1.30322 1.14910 1.10011 1.17518 1.23352 0.95623 0.99840 0.98658 0.93411 0.80168 0.91694 0.91698 0.92975 0.91173 0.74896 0.89713 0.89202 0.89389 0.87166 0.82921 0.82233 0.82166 0.83018 0.90461 0.89967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.27 13.97 21.65 0.30 -62.97 16 2 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 3 Si 0.95 45.62 27.74 68.60 1.90 47.53 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.25 -10.97 6.52 99.48 0.65 -10.32 16 6 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 7 C -0.23 -13.06 10.45 84.03 0.88 -12.18 16 8 H 0.06 3.60 8.06 -2.91 -0.02 3.57 16 9 N -0.74 -33.85 5.20 -320.44 -1.67 -35.52 16 10 C 0.14 4.98 4.48 45.52 0.20 5.19 16 11 H 0.08 2.75 8.10 -2.38 -0.02 2.73 16 12 C -0.16 -4.42 7.43 31.12 0.23 -4.19 16 13 C -0.10 -2.00 3.75 -10.27 -0.04 -2.04 16 14 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 15 C 0.14 2.69 5.51 86.38 0.48 3.17 16 16 N -0.72 -11.21 5.42 -463.05 -2.51 -13.72 16 17 C 0.52 9.00 7.15 87.66 0.63 9.63 16 18 O -0.58 -14.73 15.79 -3.04 -0.05 -14.78 16 19 C -0.09 -0.90 2.35 -11.66 -0.03 -0.93 16 20 H 0.13 0.97 8.01 -2.39 -0.02 0.95 16 21 C -0.13 -0.97 4.38 30.32 0.13 -0.83 16 22 C -0.11 -0.40 5.73 30.47 0.17 -0.23 16 23 C -0.59 -1.50 6.35 72.00 0.46 -1.04 16 24 S 2.43 22.68 5.31 -56.49 -0.30 22.38 16 25 O -0.97 -16.53 17.93 -127.40 -2.28 -18.81 16 26 O -0.98 -17.26 18.10 -127.40 -2.31 -19.56 16 27 C -0.60 -3.62 5.55 71.99 0.40 -3.22 16 28 C -0.14 -3.47 7.39 31.12 0.23 -3.24 16 29 H 0.26 15.76 8.31 -92.70 -0.77 14.99 16 30 H 0.37 16.06 5.78 -92.71 -0.54 15.52 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 2.03 7.90 -2.39 -0.02 2.01 16 33 H 0.05 1.26 7.84 -2.39 -0.02 1.24 16 34 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.41 4.30 7.81 -92.71 -0.72 3.58 16 36 H 0.08 0.92 7.72 -2.39 -0.02 0.91 16 37 H 0.09 0.56 8.09 -2.39 -0.02 0.54 16 38 H 0.09 0.36 8.01 -2.39 -0.02 0.34 16 39 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 40 H 0.15 0.01 8.14 -2.39 -0.02 -0.01 16 41 H 0.16 -0.29 8.14 -2.39 -0.02 -0.31 16 42 H 0.16 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.15 0.56 7.43 -2.39 -0.02 0.54 16 44 H 0.08 2.04 8.08 -2.39 -0.02 2.02 16 45 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -86.25 372.49 -3.02 -89.27 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -0.32 Total: 19.61 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: 4.21 Total: -13.42 kcal Atomic # 7 Polarization: -108.33 SS G_CDS: -3.88 Total: -112.21 kcal Atomic # 8 Polarization: -48.51 SS G_CDS: -4.64 Total: -53.15 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.90 Total: 47.53 kcal Atomic # 16 Polarization: 22.68 SS G_CDS: -0.30 Total: 22.38 kcal Total: -86.25 -3.02 -89.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086214263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.528 kcal (2) G-P(sol) polarization free energy of solvation -86.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds