Wall clock time and date at job start Tue Mar 31 2020 05:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46757 * 2 1 4 4 H 1.08994 * 109.87866 * 299.96902 * 3 2 1 5 5 C 1.54323 * 109.88295 * 178.95195 * 3 2 1 6 6 H 1.09003 * 110.72095 * 336.75517 * 5 3 2 7 7 N 1.46501 * 110.72032 * 100.02698 * 5 3 2 8 8 C 1.34776 * 120.00162 * 205.00320 * 7 5 3 9 9 O 1.21276 * 120.00384 * 0.02562 * 8 7 5 10 10 C 1.50703 * 119.99684 * 179.97438 * 8 7 5 11 11 H 1.09001 * 110.01388 * 59.30002 * 10 8 7 12 12 C 1.53872 * 110.03032 * 297.91772 * 10 8 7 13 13 C 1.54188 * 108.69290 * 193.57704 * 12 10 8 14 14 S 1.82926 * 105.11049 * 27.83733 * 13 12 10 15 15 O 1.42098 * 109.35175 * 244.51962 * 14 13 12 16 16 O 1.42096 * 109.47616 * 111.34786 * 14 13 12 17 17 C 1.55056 * 110.02716 * 180.67895 * 10 8 7 18 18 C 1.55401 * 102.83151 * 218.48288 * 5 3 2 19 19 C 1.54910 * 101.66476 * 35.34127 * 18 5 3 20 20 N 1.47023 * 109.88426 * 60.98809 * 3 2 1 21 21 C 1.36941 * 125.64754 * 298.32163 * 20 3 2 22 22 H 1.07996 * 119.99635 * 340.46183 * 21 20 3 23 23 C 1.38808 * 119.99690 * 160.45514 * 21 20 3 24 24 N 1.31623 * 119.99575 * 160.85353 * 23 21 20 25 25 Si 1.86797 * 120.00636 * 340.85408 * 23 21 20 26 26 H 1.48506 * 109.46713 * 85.36906 * 25 23 21 27 27 H 1.48496 * 109.47382 * 205.37239 * 25 23 21 28 28 H 1.48499 * 109.47205 * 325.37588 * 25 23 21 29 29 H 1.09002 * 109.46937 * 172.65933 * 1 2 3 30 30 H 1.09000 * 109.47422 * 292.65894 * 1 2 3 31 31 H 1.09004 * 109.47357 * 52.66810 * 1 2 3 32 32 H 1.08997 * 109.47465 * 240.00359 * 2 1 3 33 33 H 1.09000 * 109.47280 * 119.99668 * 2 1 3 34 34 H 0.97000 * 120.00025 * 25.00295 * 7 5 3 35 35 H 1.09003 * 109.65031 * 313.38302 * 12 10 8 36 36 H 1.09002 * 109.64584 * 73.67734 * 12 10 8 37 37 H 1.08998 * 110.27606 * 268.94168 * 13 12 10 38 38 H 1.09002 * 110.43136 * 146.80615 * 13 12 10 39 39 H 1.08997 * 110.78797 * 279.99952 * 17 10 8 40 40 H 1.09003 * 110.78712 * 43.25990 * 17 10 8 41 41 H 1.08998 * 110.89135 * 277.26616 * 18 5 3 42 42 H 1.09005 * 111.06931 * 153.48660 * 18 5 3 43 43 H 1.09001 * 110.36101 * 204.23724 * 19 18 5 44 44 H 1.08998 * 110.46291 * 81.95940 * 19 18 5 45 45 H 0.97007 * 120.00104 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6807 1.9626 -0.8879 5 6 3.5828 1.4538 0.0265 6 1 3.9683 0.5224 0.4413 7 7 4.1226 1.6879 -1.3151 8 6 5.3592 1.2537 -1.6293 9 8 6.0250 0.6686 -0.8015 10 6 5.9142 1.4941 -3.0096 11 1 5.9467 2.5635 -3.2176 12 6 5.0449 0.7793 -4.0590 13 6 5.8095 0.7508 -5.3976 14 16 7.5795 0.7765 -4.9363 15 8 8.1712 1.9797 -5.4068 16 8 8.1708 -0.4753 -5.2564 17 6 7.3367 0.8876 -3.1231 18 6 3.9031 2.6481 0.9678 19 6 2.7488 2.5543 1.9967 20 7 1.5743 2.1375 1.2091 21 6 0.2664 2.3612 1.5474 22 1 -0.5029 2.3122 0.7910 23 6 -0.0706 2.6507 2.8624 24 7 -1.2225 3.2262 3.1351 25 14 1.1106 2.2238 4.2451 26 1 2.0943 3.3236 4.4129 27 1 0.3501 2.0429 5.5077 28 1 1.8265 0.9657 3.9138 29 1 -0.3633 -1.0193 -0.1313 30 1 -0.3634 0.3959 0.9483 31 1 -0.3634 0.6232 -0.8171 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.5900 2.1555 -1.9774 35 1 4.8405 -0.2404 -3.7326 36 1 4.1051 1.3172 -4.1842 37 1 5.5609 1.6289 -5.9935 38 1 5.5757 -0.1593 -5.9501 39 1 8.0765 1.5498 -2.6735 40 1 7.3739 -0.1001 -2.6635 41 1 3.8663 3.5922 0.4242 42 1 4.8704 2.5164 1.4528 43 1 2.5713 3.5262 2.4572 44 1 2.9777 1.8100 2.7594 45 1 -1.4582 3.4283 4.0542 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087646533.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:12 Heat of formation + Delta-G solvation = -80.145291 kcal Electronic energy + Delta-G solvation = -27217.023358 eV Core-core repulsion = 23362.587083 eV Total energy + Delta-G solvation = -3854.436275 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -40.35142 -38.38723 -37.42984 -36.49866 -36.14226 -34.41668 -32.61165 -32.17769 -30.57576 -29.51661 -27.42720 -26.15275 -24.32852 -22.99173 -22.28128 -20.94621 -20.48778 -19.46352 -19.24949 -17.87432 -17.35954 -17.05961 -16.39413 -16.08966 -15.96615 -15.18386 -15.12243 -14.96394 -14.80758 -14.09299 -13.97612 -13.68704 -13.26199 -13.07003 -12.91575 -12.75034 -12.57599 -12.55291 -12.44035 -12.38007 -12.24032 -11.97224 -11.62527 -11.45795 -11.24486 -11.21153 -11.03947 -10.80478 -10.74359 -10.46995 -10.33773 -10.14313 -10.00464 -9.85169 -9.35057 -8.99942 -8.71654 -7.13251 -6.00655 -3.33451 -0.40041 2.05465 2.37676 2.96369 3.12730 3.29740 3.44098 3.44834 3.57722 3.75406 4.02698 4.11154 4.31402 4.37868 4.47743 4.62748 4.87018 4.94866 5.04934 5.05289 5.10066 5.17117 5.21656 5.33726 5.42401 5.50124 5.70356 5.78530 5.83370 5.99906 6.06190 6.18907 6.28701 6.44259 6.50839 6.53932 6.64571 6.66424 6.92316 7.30247 7.37960 7.63114 8.04773 8.23966 8.74331 9.60391 10.07556 11.14679 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.027649 B = 0.002767 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.451835 B =10115.127787 C =10539.467213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C 0.160 3.840 4 H 0.046 0.954 5 C 0.131 3.869 6 H 0.099 0.901 7 N -0.711 5.711 8 C 0.527 3.473 9 O -0.531 6.531 10 C -0.114 4.114 11 H 0.123 0.877 12 C -0.108 4.108 13 C -0.591 4.591 14 S 2.389 3.611 15 O -0.936 6.936 16 O -0.937 6.937 17 C -0.567 4.567 18 C -0.140 4.140 19 C 0.107 3.893 20 N -0.600 5.600 21 C -0.235 4.235 22 H 0.099 0.901 23 C 0.021 3.979 24 N -0.910 5.910 25 Si 0.884 3.116 26 H -0.286 1.286 27 H -0.304 1.304 28 H -0.274 1.274 29 H 0.030 0.970 30 H 0.097 0.903 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.055 0.945 34 H 0.401 0.599 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.150 0.850 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.031 0.969 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.068 -3.861 -16.273 21.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C 0.052 3.948 4 H 0.064 0.936 5 C 0.027 3.973 6 H 0.117 0.883 7 N -0.362 5.362 8 C 0.311 3.689 9 O -0.407 6.407 10 C -0.137 4.137 11 H 0.140 0.860 12 C -0.147 4.147 13 C -0.720 4.720 14 S 2.572 3.428 15 O -0.933 6.933 16 O -0.934 6.934 17 C -0.696 4.696 18 C -0.179 4.179 19 C -0.019 4.019 20 N -0.326 5.326 21 C -0.361 4.361 22 H 0.116 0.884 23 C -0.177 4.177 24 N -0.554 5.554 25 Si 0.715 3.285 26 H -0.213 1.213 27 H -0.232 1.232 28 H -0.200 1.200 29 H 0.049 0.951 30 H 0.115 0.885 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.236 0.764 35 H 0.112 0.888 36 H 0.121 0.879 37 H 0.159 0.841 38 H 0.160 0.840 39 H 0.161 0.839 40 H 0.168 0.832 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.049 0.951 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.155 -4.244 -16.087 21.844 hybrid contribution -0.427 0.062 1.107 1.188 sum 13.728 -4.182 -14.980 20.745 Atomic orbital electron populations 1.21995 0.95131 0.99151 1.04840 1.21912 0.97510 0.97148 0.99889 1.21148 0.89300 0.92366 0.91954 0.93637 1.22217 0.94506 0.99418 0.81191 0.88293 1.46008 1.16213 1.58753 1.15202 1.19877 0.81678 0.78875 0.88453 1.90727 1.58439 1.41201 1.50325 1.22050 0.93105 1.03237 0.95277 0.85953 1.21908 0.99700 1.03701 0.89403 1.30505 1.23247 1.12360 1.05916 1.09079 0.78833 0.75322 0.79529 1.93633 1.74440 1.46747 1.78480 1.93628 1.74480 1.42975 1.82284 1.30606 1.02999 1.11910 1.24120 1.23170 0.98835 0.98075 0.97860 1.22033 0.86821 0.99053 0.93971 1.44771 1.01877 1.63853 1.22081 1.18619 0.81469 1.42247 0.93810 0.88353 1.24999 0.95989 0.99750 0.96993 1.69790 1.23043 1.43003 1.19548 0.87010 0.80080 0.79157 0.82275 1.21347 1.23180 1.19957 0.95129 0.88462 0.93911 0.93900 0.92618 0.76372 0.88833 0.87913 0.84113 0.83960 0.83854 0.83220 0.90927 0.91286 0.91914 0.95142 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 8.64 37.16 0.32 -2.43 16 2 C -0.13 -2.08 5.51 -26.73 -0.15 -2.23 16 3 C 0.16 2.72 3.05 -66.95 -0.20 2.52 16 4 H 0.05 0.74 7.71 -51.93 -0.40 0.34 16 5 C 0.13 1.95 2.86 -65.96 -0.19 1.76 16 6 H 0.10 1.61 7.26 -51.93 -0.38 1.23 16 7 N -0.71 -7.65 5.12 -51.90 -0.27 -7.92 16 8 C 0.53 5.68 7.14 -10.98 -0.08 5.60 16 9 O -0.53 -7.88 15.43 5.56 0.09 -7.79 16 10 C -0.11 -0.74 2.96 -90.23 -0.27 -1.00 16 11 H 0.12 0.51 8.14 -51.93 -0.42 0.08 16 12 C -0.11 -0.47 5.67 -25.66 -0.15 -0.62 16 13 C -0.59 -2.14 7.26 37.78 0.27 -1.86 16 14 S 2.39 15.98 6.10 -107.50 -0.66 15.32 16 15 O -0.94 -9.44 18.15 -57.73 -1.05 -10.48 16 16 O -0.94 -9.90 18.15 -57.73 -1.05 -10.95 16 17 C -0.57 -3.79 6.20 38.24 0.24 -3.55 16 18 C -0.14 -2.24 6.78 -24.45 -0.17 -2.41 16 19 C 0.11 2.17 4.70 -2.53 -0.01 2.16 16 20 N -0.60 -12.98 2.94 -162.57 -0.48 -13.46 16 21 C -0.23 -6.00 7.79 -15.06 -0.12 -6.12 16 22 H 0.10 2.66 6.98 -52.49 -0.37 2.29 16 23 C 0.02 0.58 5.46 -17.43 -0.10 0.49 16 24 N -0.91 -26.76 13.97 55.49 0.78 -25.98 16 25 Si 0.88 21.78 24.25 -169.99 -4.12 17.66 16 26 H -0.29 -6.86 6.55 56.52 0.37 -6.49 16 27 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 28 H -0.27 -6.65 6.38 56.52 0.36 -6.29 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.10 2.11 5.38 -51.93 -0.28 1.83 16 31 H 0.04 0.73 8.12 -51.93 -0.42 0.31 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.40 3.21 8.35 -40.82 -0.34 2.87 16 35 H 0.09 0.43 8.09 -51.93 -0.42 0.00 16 36 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.14 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.14 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.14 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.15 1.09 7.64 -51.93 -0.40 0.70 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.06 1.37 6.56 -51.93 -0.34 1.03 16 44 H 0.03 0.66 5.36 -51.93 -0.28 0.39 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 359.34 15.07 5.42 5.42 Total: -1.00 -36.56 359.34 -8.99 -45.55 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -7.06 Total: 0.35 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -0.59 Total: -7.70 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 0.03 Total: -47.36 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -2.01 Total: -29.23 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.12 Total: 17.66 kcal Atomic # 16 Polarization: 15.98 SS G_CDS: -0.66 Total: 15.32 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.56 -8.99 -45.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087646533.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.599 kcal (2) G-P(sol) polarization free energy of solvation -36.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds