Wall clock time and date at job start Tue Mar 31 2020 05:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46757 * 2 1 4 4 H 1.08994 * 109.87866 * 299.96902 * 3 2 1 5 5 C 1.54323 * 109.88295 * 178.95195 * 3 2 1 6 6 H 1.09003 * 110.72095 * 336.75517 * 5 3 2 7 7 N 1.46501 * 110.72032 * 100.02698 * 5 3 2 8 8 C 1.34776 * 120.00162 * 205.00320 * 7 5 3 9 9 O 1.21276 * 120.00384 * 0.02562 * 8 7 5 10 10 C 1.50703 * 119.99684 * 179.97438 * 8 7 5 11 11 H 1.09001 * 110.01388 * 59.30002 * 10 8 7 12 12 C 1.53872 * 110.03032 * 297.91772 * 10 8 7 13 13 C 1.54188 * 108.69290 * 193.57704 * 12 10 8 14 14 S 1.82926 * 105.11049 * 27.83733 * 13 12 10 15 15 O 1.42098 * 109.35175 * 244.51962 * 14 13 12 16 16 O 1.42096 * 109.47616 * 111.34786 * 14 13 12 17 17 C 1.55056 * 110.02716 * 180.67895 * 10 8 7 18 18 C 1.55401 * 102.83151 * 218.48288 * 5 3 2 19 19 C 1.54910 * 101.66476 * 35.34127 * 18 5 3 20 20 N 1.47023 * 109.88426 * 60.98809 * 3 2 1 21 21 C 1.36941 * 125.64754 * 298.32163 * 20 3 2 22 22 H 1.07996 * 119.99635 * 340.46183 * 21 20 3 23 23 C 1.38808 * 119.99690 * 160.45514 * 21 20 3 24 24 N 1.31623 * 119.99575 * 160.85353 * 23 21 20 25 25 Si 1.86797 * 120.00636 * 340.85408 * 23 21 20 26 26 H 1.48506 * 109.46713 * 85.36906 * 25 23 21 27 27 H 1.48496 * 109.47382 * 205.37239 * 25 23 21 28 28 H 1.48499 * 109.47205 * 325.37588 * 25 23 21 29 29 H 1.09002 * 109.46937 * 172.65933 * 1 2 3 30 30 H 1.09000 * 109.47422 * 292.65894 * 1 2 3 31 31 H 1.09004 * 109.47357 * 52.66810 * 1 2 3 32 32 H 1.08997 * 109.47465 * 240.00359 * 2 1 3 33 33 H 1.09000 * 109.47280 * 119.99668 * 2 1 3 34 34 H 0.97000 * 120.00025 * 25.00295 * 7 5 3 35 35 H 1.09003 * 109.65031 * 313.38302 * 12 10 8 36 36 H 1.09002 * 109.64584 * 73.67734 * 12 10 8 37 37 H 1.08998 * 110.27606 * 268.94168 * 13 12 10 38 38 H 1.09002 * 110.43136 * 146.80615 * 13 12 10 39 39 H 1.08997 * 110.78797 * 279.99952 * 17 10 8 40 40 H 1.09003 * 110.78712 * 43.25990 * 17 10 8 41 41 H 1.08998 * 110.89135 * 277.26616 * 18 5 3 42 42 H 1.09005 * 111.06931 * 153.48660 * 18 5 3 43 43 H 1.09001 * 110.36101 * 204.23724 * 19 18 5 44 44 H 1.08998 * 110.46291 * 81.95940 * 19 18 5 45 45 H 0.97007 * 120.00104 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6807 1.9626 -0.8879 5 6 3.5828 1.4538 0.0265 6 1 3.9683 0.5224 0.4413 7 7 4.1226 1.6879 -1.3151 8 6 5.3592 1.2537 -1.6293 9 8 6.0250 0.6686 -0.8015 10 6 5.9142 1.4941 -3.0096 11 1 5.9467 2.5635 -3.2176 12 6 5.0449 0.7793 -4.0590 13 6 5.8095 0.7508 -5.3976 14 16 7.5795 0.7765 -4.9363 15 8 8.1712 1.9797 -5.4068 16 8 8.1708 -0.4753 -5.2564 17 6 7.3367 0.8876 -3.1231 18 6 3.9031 2.6481 0.9678 19 6 2.7488 2.5543 1.9967 20 7 1.5743 2.1375 1.2091 21 6 0.2664 2.3612 1.5474 22 1 -0.5029 2.3122 0.7910 23 6 -0.0706 2.6507 2.8624 24 7 -1.2225 3.2262 3.1351 25 14 1.1106 2.2238 4.2451 26 1 2.0943 3.3236 4.4129 27 1 0.3501 2.0429 5.5077 28 1 1.8265 0.9657 3.9138 29 1 -0.3633 -1.0193 -0.1313 30 1 -0.3634 0.3959 0.9483 31 1 -0.3634 0.6232 -0.8171 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.5900 2.1555 -1.9774 35 1 4.8405 -0.2404 -3.7326 36 1 4.1051 1.3172 -4.1842 37 1 5.5609 1.6289 -5.9935 38 1 5.5757 -0.1593 -5.9501 39 1 8.0765 1.5498 -2.6735 40 1 7.3739 -0.1001 -2.6635 41 1 3.8663 3.5922 0.4242 42 1 4.8704 2.5164 1.4528 43 1 2.5713 3.5262 2.4572 44 1 2.9777 1.8100 2.7594 45 1 -1.4582 3.4283 4.0542 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087646533.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:11 Heat of formation + Delta-G solvation = -110.139811 kcal Electronic energy + Delta-G solvation = -27218.324018 eV Core-core repulsion = 23362.587083 eV Total energy + Delta-G solvation = -3855.736935 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.29832 -39.70624 -38.07881 -37.13723 -36.73564 -35.68449 -34.15129 -33.86096 -31.28390 -30.84917 -28.77429 -27.05495 -25.73341 -23.91100 -23.64308 -22.11361 -21.53297 -20.70964 -19.79773 -18.90205 -18.61632 -17.82087 -17.61371 -17.03038 -16.71138 -16.62533 -16.24245 -15.84885 -15.31571 -15.26967 -15.03471 -14.87455 -14.75364 -14.43879 -14.07042 -13.82845 -13.57668 -13.53371 -13.23981 -13.19326 -13.07089 -13.01739 -13.00793 -12.79412 -12.58324 -12.36412 -12.01779 -11.95028 -11.92287 -11.79616 -11.67056 -11.53522 -11.25037 -11.23444 -10.86209 -10.71261 -10.02889 -8.99520 -8.10547 -5.36754 -0.89965 1.30285 1.40248 1.45315 1.54525 1.60469 2.11083 2.44305 2.64743 3.07746 3.11701 3.21901 3.33642 3.59993 3.66761 3.68686 3.76844 3.90865 4.04967 4.12728 4.15636 4.25106 4.42888 4.48259 4.56087 4.62767 4.69436 4.74809 4.84453 4.89142 4.93078 4.99455 5.01707 5.06088 5.10476 5.16223 5.22225 5.39251 5.61025 5.71312 5.81713 6.18411 6.56554 6.80985 7.24270 7.59728 8.14650 9.08840 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.027649 B = 0.002767 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.451835 B =10115.127787 C =10539.467213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C 0.156 3.844 4 H 0.065 0.935 5 C 0.147 3.853 6 H 0.087 0.913 7 N -0.699 5.699 8 C 0.529 3.471 9 O -0.574 6.574 10 C -0.110 4.110 11 H 0.154 0.846 12 C -0.112 4.112 13 C -0.559 4.559 14 S 2.396 3.604 15 O -0.974 6.974 16 O -0.984 6.984 17 C -0.569 4.569 18 C -0.128 4.128 19 C 0.099 3.901 20 N -0.616 5.616 21 C -0.197 4.197 22 H 0.081 0.919 23 C -0.039 4.039 24 N -0.960 5.960 25 Si 0.932 3.068 26 H -0.278 1.278 27 H -0.317 1.317 28 H -0.271 1.271 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.038 0.962 34 H 0.419 0.581 35 H 0.094 0.906 36 H 0.133 0.867 37 H 0.168 0.832 38 H 0.161 0.839 39 H 0.145 0.855 40 H 0.140 0.860 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.019 0.981 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.902 -4.051 -19.100 23.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C 0.050 3.950 4 H 0.083 0.917 5 C 0.041 3.959 6 H 0.105 0.895 7 N -0.351 5.351 8 C 0.315 3.685 9 O -0.453 6.453 10 C -0.132 4.132 11 H 0.172 0.828 12 C -0.150 4.150 13 C -0.692 4.692 14 S 2.584 3.416 15 O -0.971 6.971 16 O -0.981 6.981 17 C -0.699 4.699 18 C -0.167 4.167 19 C -0.026 4.026 20 N -0.342 5.342 21 C -0.326 4.326 22 H 0.098 0.902 23 C -0.233 4.233 24 N -0.608 5.608 25 Si 0.763 3.237 26 H -0.205 1.205 27 H -0.247 1.247 28 H -0.197 1.197 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.057 0.943 34 H 0.258 0.742 35 H 0.113 0.887 36 H 0.151 0.849 37 H 0.186 0.814 38 H 0.179 0.821 39 H 0.163 0.837 40 H 0.158 0.842 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.062 0.938 44 H 0.036 0.964 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 15.075 -4.443 -18.970 24.634 hybrid contribution -0.706 0.072 1.876 2.006 sum 14.369 -4.371 -17.094 22.755 Atomic orbital electron populations 1.21865 0.96155 1.00168 1.02437 1.21869 0.96414 0.96901 1.00861 1.21351 0.90966 0.92354 0.90302 0.91720 1.21772 0.92693 0.98316 0.83135 0.89514 1.45786 1.16575 1.58931 1.13855 1.20525 0.80912 0.77454 0.89587 1.90726 1.59490 1.43014 1.52080 1.22155 0.92581 1.05461 0.93043 0.82848 1.22047 1.00321 1.04071 0.88586 1.30315 1.17971 1.14736 1.06185 1.08669 0.80464 0.73449 0.78982 1.93580 1.76740 1.47751 1.79060 1.93565 1.76981 1.44594 1.82930 1.30572 1.03765 1.11603 1.23959 1.23078 0.97189 0.99461 0.96989 1.22048 0.88040 0.97531 0.94982 1.44896 1.00949 1.64836 1.23479 1.18575 0.82911 1.38231 0.92856 0.90186 1.25475 0.97233 1.01526 0.99021 1.69896 1.25233 1.46359 1.19348 0.86214 0.78507 0.79166 0.79772 1.20502 1.24672 1.19674 0.93205 0.92958 0.93286 0.90141 0.94336 0.74243 0.88737 0.84929 0.81426 0.82069 0.83723 0.84156 0.89382 0.90398 0.93797 0.96384 0.93283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.07 8.64 71.98 0.62 -4.44 16 2 C -0.12 -3.70 5.51 30.59 0.17 -3.53 16 3 C 0.16 4.89 3.05 45.34 0.14 5.03 16 4 H 0.07 1.83 7.71 -2.39 -0.02 1.81 16 5 C 0.15 3.89 2.86 46.27 0.13 4.02 16 6 H 0.09 2.60 7.26 -2.39 -0.02 2.58 16 7 N -0.70 -11.98 5.12 -436.51 -2.24 -14.22 16 8 C 0.53 9.47 7.14 87.66 0.63 10.09 16 9 O -0.57 -15.79 15.43 -3.02 -0.05 -15.84 16 10 C -0.11 -0.96 2.96 -10.54 -0.03 -0.99 16 11 H 0.15 0.45 8.14 -2.39 -0.02 0.43 16 12 C -0.11 -0.38 5.67 31.29 0.18 -0.20 16 13 C -0.56 -1.34 7.26 72.38 0.53 -0.81 16 14 S 2.40 27.66 6.10 -56.49 -0.34 27.32 16 15 O -0.97 -18.28 18.15 -127.47 -2.31 -20.60 16 16 O -0.98 -20.27 18.15 -127.47 -2.31 -22.58 16 17 C -0.57 -6.50 6.20 72.69 0.45 -6.04 16 18 C -0.13 -3.76 6.78 32.07 0.22 -3.55 16 19 C 0.10 3.93 4.70 86.85 0.41 4.34 16 20 N -0.62 -26.01 2.94 -668.26 -1.96 -27.97 16 21 C -0.20 -10.15 7.79 84.03 0.65 -9.50 16 22 H 0.08 4.38 6.98 -2.91 -0.02 4.36 16 23 C -0.04 -2.19 5.46 84.86 0.46 -1.72 16 24 N -0.96 -58.47 13.97 21.65 0.30 -58.17 16 25 Si 0.93 46.19 24.25 68.60 1.66 47.85 16 26 H -0.28 -13.21 6.55 99.48 0.65 -12.56 16 27 H -0.32 -16.28 7.11 99.48 0.71 -15.57 16 28 H -0.27 -13.06 6.38 99.48 0.63 -12.43 16 29 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.05 2.26 5.38 -2.39 -0.01 2.25 16 31 H 0.05 1.57 8.12 -2.38 -0.02 1.55 16 32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.42 4.34 8.35 -92.71 -0.77 3.57 16 35 H 0.09 0.39 8.09 -2.39 -0.02 0.37 16 36 H 0.13 -0.20 8.14 -2.39 -0.02 -0.22 16 37 H 0.17 -0.31 8.14 -2.39 -0.02 -0.33 16 38 H 0.16 -0.01 8.14 -2.39 -0.02 -0.03 16 39 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.14 1.92 7.64 -2.39 -0.02 1.90 16 41 H 0.09 2.33 8.14 -2.39 -0.02 2.32 16 42 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 43 H 0.04 1.90 6.56 -2.39 -0.02 1.88 16 44 H 0.02 0.78 5.36 -2.39 -0.01 0.77 16 45 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 Total: -1.00 -83.46 359.34 -2.60 -86.05 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: 0.10 Total: 5.46 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 4.55 Total: -7.31 kcal Atomic # 7 Polarization: -96.46 SS G_CDS: -3.90 Total: -100.35 kcal Atomic # 8 Polarization: -54.34 SS G_CDS: -4.67 Total: -59.02 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.66 Total: 47.85 kcal Atomic # 16 Polarization: 27.66 SS G_CDS: -0.34 Total: 27.32 kcal Total: -83.46 -2.60 -86.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087646533.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.086 kcal (2) G-P(sol) polarization free energy of solvation -83.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds