Wall clock time and date at job start Tue Mar 31 2020 05:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 H 1.08998 * 109.99639 * 305.30502 * 3 2 1 5 5 C 1.54327 * 109.88352 * 184.21114 * 3 2 1 6 6 H 1.09001 * 110.71827 * 336.92513 * 5 3 2 7 7 N 1.46498 * 110.72004 * 100.02551 * 5 3 2 8 8 C 1.34778 * 119.99560 * 205.00279 * 7 5 3 9 9 O 1.21279 * 120.00288 * 359.97438 * 8 7 5 10 10 C 1.50702 * 119.99967 * 180.02562 * 8 7 5 11 11 H 1.09003 * 109.63759 * 300.42531 * 10 8 7 12 12 C 1.53881 * 109.64757 * 60.71753 * 10 8 7 13 13 C 1.55053 * 106.62137 * 167.03772 * 12 10 8 14 14 S 1.83289 * 102.56468 * 317.56639 * 13 12 10 15 15 O 1.42098 * 109.35220 * 269.81312 * 14 13 12 16 16 O 1.42101 * 109.34966 * 136.61359 * 14 13 12 17 17 C 1.54162 * 109.64940 * 179.97438 * 10 8 7 18 18 C 1.55275 * 103.00606 * 218.46739 * 5 3 2 19 19 C 1.54906 * 101.52873 * 35.36155 * 18 5 3 20 20 N 1.47019 * 109.88405 * 66.39930 * 3 2 1 21 21 C 1.36934 * 125.64850 * 298.38166 * 20 3 2 22 22 H 1.08000 * 120.00220 * 334.96590 * 21 20 3 23 23 C 1.38816 * 119.99944 * 154.95907 * 21 20 3 24 24 N 1.31621 * 119.99619 * 159.50700 * 23 21 20 25 25 Si 1.86799 * 120.00104 * 339.51642 * 23 21 20 26 26 H 1.48495 * 109.47349 * 84.72212 * 25 23 21 27 27 H 1.48500 * 109.46876 * 204.72590 * 25 23 21 28 28 H 1.48502 * 109.46858 * 324.71860 * 25 23 21 29 29 H 1.09003 * 109.46886 * 292.25636 * 1 2 3 30 30 H 1.08997 * 109.47027 * 52.25111 * 1 2 3 31 31 H 1.08995 * 109.47053 * 172.25929 * 1 2 3 32 32 H 1.08996 * 109.47261 * 239.99738 * 2 1 3 33 33 H 1.09000 * 109.47219 * 119.99885 * 2 1 3 34 34 H 0.96996 * 120.00624 * 24.99728 * 7 5 3 35 35 H 1.08998 * 110.02988 * 286.32580 * 12 10 8 36 36 H 1.08992 * 110.02540 * 47.74884 * 12 10 8 37 37 H 1.08998 * 110.78472 * 199.30107 * 13 12 10 38 38 H 1.08994 * 110.78955 * 75.83666 * 13 12 10 39 39 H 1.09000 * 110.32116 * 331.14254 * 17 10 8 40 40 H 1.09004 * 110.31904 * 93.33299 * 17 10 8 41 41 H 1.09001 * 110.95957 * 277.33421 * 18 5 3 42 42 H 1.09002 * 111.10252 * 153.44696 * 18 5 3 43 43 H 1.09002 * 110.36649 * 204.23710 * 19 18 5 44 44 H 1.08992 * 110.37342 * 82.02218 * 19 18 5 45 45 H 0.96996 * 119.99607 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6062 1.9912 -0.8359 5 6 3.5796 1.4548 -0.1066 6 1 3.9978 0.5105 0.2419 7 7 4.0017 1.7304 -1.4821 8 6 5.2060 1.3074 -1.9149 9 8 5.9403 0.6990 -1.1656 10 6 5.6406 1.5914 -3.3297 11 1 4.9333 1.1427 -4.0272 12 6 5.6949 3.1121 -3.5589 13 6 6.4540 3.3327 -4.8927 14 16 7.8378 2.1375 -4.7664 15 8 8.9519 2.7701 -4.1518 16 8 7.9980 1.4695 -6.0104 17 6 7.0465 1.0055 -3.5676 18 6 3.9859 2.6187 0.8375 19 6 2.9255 2.4919 1.9595 20 7 1.6849 2.0984 1.2669 21 6 0.4126 2.3086 1.7275 22 1 -0.4106 2.3699 1.0311 23 6 0.1809 2.4428 3.0896 24 7 -0.9172 3.0304 3.5156 25 14 1.4276 1.7898 4.3179 26 1 2.4869 2.8072 4.5365 27 1 0.7478 1.4984 5.6056 28 1 2.0389 0.5445 3.7881 29 1 -0.3633 0.3892 0.9511 30 1 -0.3633 0.6291 -0.8126 31 1 -0.3633 -1.0183 -0.1384 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.4146 2.2173 -2.0813 35 1 4.6847 3.5147 -3.6333 36 1 6.2300 3.5940 -2.7407 37 1 6.8296 4.3538 -4.9597 38 1 5.8160 3.0974 -5.7445 39 1 7.6113 0.9862 -2.6355 40 1 6.9724 0.0021 -3.9870 41 1 3.9041 3.5796 0.3294 42 1 4.9914 2.4714 1.2318 43 1 2.7910 3.4485 2.4643 44 1 3.2202 1.7244 2.6751 45 1 -1.0793 3.1238 4.4673 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087646534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:17 Heat of formation + Delta-G solvation = -83.132600 kcal Electronic energy + Delta-G solvation = -27232.831108 eV Core-core repulsion = 23378.265293 eV Total energy + Delta-G solvation = -3854.565815 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -40.37657 -38.36815 -37.40946 -36.47161 -36.12062 -34.40257 -32.61135 -32.18074 -30.54704 -29.52482 -27.43035 -26.12174 -24.31587 -22.95271 -22.23166 -20.98172 -20.45509 -19.43209 -19.21507 -17.89396 -17.36324 -17.08262 -16.31073 -16.13644 -15.97522 -15.31236 -15.10118 -14.89239 -14.60935 -14.14059 -13.99586 -13.66756 -13.21238 -13.06862 -12.88313 -12.68245 -12.57935 -12.52358 -12.43753 -12.37756 -12.27088 -11.97399 -11.67322 -11.50881 -11.19921 -11.16719 -10.97678 -10.77816 -10.72861 -10.50480 -10.38627 -10.19124 -10.02211 -9.89120 -9.42850 -8.99465 -8.66407 -7.09465 -6.03606 -3.38122 -0.37739 2.07482 2.38231 2.97692 3.13372 3.30549 3.44483 3.46771 3.61387 3.77736 4.00758 4.11905 4.32906 4.39486 4.47960 4.66142 4.88266 4.97805 5.01190 5.06308 5.10726 5.15848 5.22175 5.33713 5.44715 5.50038 5.70891 5.79606 5.84687 5.99713 6.06345 6.20094 6.29590 6.44519 6.53294 6.54364 6.64789 6.66590 6.93421 7.25659 7.38330 7.68473 8.05045 8.23642 8.74285 9.59357 10.09161 11.11805 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.026269 B = 0.002784 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.628812 B =10055.136435 C =10333.315794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C 0.158 3.842 4 H 0.046 0.954 5 C 0.131 3.869 6 H 0.098 0.902 7 N -0.711 5.711 8 C 0.523 3.477 9 O -0.532 6.532 10 C -0.105 4.105 11 H 0.121 0.879 12 C -0.116 4.116 13 C -0.587 4.587 14 S 2.390 3.610 15 O -0.933 6.933 16 O -0.939 6.939 17 C -0.579 4.579 18 C -0.140 4.140 19 C 0.114 3.886 20 N -0.598 5.598 21 C -0.237 4.237 22 H 0.094 0.906 23 C 0.027 3.973 24 N -0.906 5.906 25 Si 0.880 3.120 26 H -0.285 1.285 27 H -0.302 1.302 28 H -0.275 1.275 29 H 0.093 0.907 30 H 0.041 0.959 31 H 0.031 0.969 32 H 0.042 0.958 33 H 0.057 0.943 34 H 0.401 0.599 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.155 0.845 40 H 0.143 0.857 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.026 0.974 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.225 -0.717 -17.229 21.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C 0.051 3.949 4 H 0.064 0.936 5 C 0.026 3.974 6 H 0.116 0.884 7 N -0.361 5.361 8 C 0.307 3.693 9 O -0.408 6.408 10 C -0.128 4.128 11 H 0.139 0.861 12 C -0.155 4.155 13 C -0.716 4.716 14 S 2.573 3.427 15 O -0.930 6.930 16 O -0.936 6.936 17 C -0.708 4.708 18 C -0.180 4.180 19 C -0.011 4.011 20 N -0.325 5.325 21 C -0.364 4.364 22 H 0.112 0.888 23 C -0.172 4.172 24 N -0.549 5.549 25 Si 0.710 3.290 26 H -0.212 1.212 27 H -0.230 1.230 28 H -0.200 1.200 29 H 0.112 0.888 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.236 0.764 35 H 0.126 0.874 36 H 0.114 0.886 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.173 0.827 40 H 0.162 0.838 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.043 0.957 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.444 -1.118 -16.950 21.663 hybrid contribution -0.503 -0.226 0.953 1.101 sum 12.941 -1.344 -15.997 20.620 Atomic orbital electron populations 1.21927 0.95262 0.99263 1.04528 1.21905 0.97351 0.97235 0.99957 1.21208 0.89796 0.92627 0.91315 0.93629 1.22211 0.95780 0.99366 0.80027 0.88376 1.46005 1.17971 1.57656 1.14493 1.20017 0.81788 0.79112 0.88423 1.90717 1.52928 1.40502 1.56663 1.21740 0.96685 0.96667 0.97678 0.86139 1.22245 1.04436 0.93475 0.95310 1.30639 1.18435 1.17213 1.05313 1.09075 0.78055 0.78800 0.76796 1.93641 1.47174 1.74705 1.77526 1.93621 1.85897 1.73490 1.40612 1.30521 1.06400 1.15124 1.18772 1.23154 0.99059 0.98227 0.97556 1.21928 0.86353 0.98786 0.94031 1.44758 1.01837 1.65943 1.19914 1.18535 0.82851 1.43697 0.91275 0.88822 1.25142 0.96080 0.99260 0.96763 1.69806 1.27082 1.43235 1.14781 0.86971 0.80882 0.80236 0.80892 1.21178 1.23021 1.20036 0.88789 0.93983 0.94971 0.93933 0.92466 0.76396 0.87409 0.88591 0.84022 0.84073 0.82729 0.83846 0.90891 0.91256 0.92065 0.95677 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.01 37.16 0.33 -2.38 16 2 C -0.12 -2.13 5.46 -26.73 -0.15 -2.27 16 3 C 0.16 2.71 3.00 -66.95 -0.20 2.51 16 4 H 0.05 0.75 7.72 -51.93 -0.40 0.35 16 5 C 0.13 1.95 2.84 -66.03 -0.19 1.76 16 6 H 0.10 1.62 7.25 -51.93 -0.38 1.25 16 7 N -0.71 -7.67 5.09 -51.97 -0.26 -7.93 16 8 C 0.52 5.66 7.14 -10.98 -0.08 5.58 16 9 O -0.53 -7.97 15.08 5.56 0.08 -7.89 16 10 C -0.11 -0.67 2.95 -90.70 -0.27 -0.93 16 11 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 12 C -0.12 -0.53 5.65 -25.19 -0.14 -0.67 16 13 C -0.59 -2.17 7.31 38.24 0.28 -1.89 16 14 S 2.39 16.61 6.10 -107.50 -0.66 15.95 16 15 O -0.93 -10.31 18.14 -57.71 -1.05 -11.36 16 16 O -0.94 -9.60 18.15 -57.71 -1.05 -10.65 16 17 C -0.58 -3.92 6.48 37.76 0.24 -3.68 16 18 C -0.14 -2.23 6.78 -24.52 -0.17 -2.39 16 19 C 0.11 2.32 4.75 -2.53 -0.01 2.31 16 20 N -0.60 -12.96 2.85 -162.58 -0.46 -13.43 16 21 C -0.24 -6.06 7.86 -15.06 -0.12 -6.18 16 22 H 0.09 2.55 7.27 -52.49 -0.38 2.16 16 23 C 0.03 0.74 5.44 -17.43 -0.09 0.64 16 24 N -0.91 -26.56 13.97 55.49 0.78 -25.79 16 25 Si 0.88 21.76 24.35 -169.99 -4.14 17.62 16 26 H -0.28 -6.85 6.73 56.52 0.38 -6.46 16 27 H -0.30 -7.67 7.11 56.52 0.40 -7.26 16 28 H -0.27 -6.74 6.79 56.52 0.38 -6.36 16 29 H 0.09 2.02 5.47 -51.93 -0.28 1.74 16 30 H 0.04 0.70 8.13 -51.93 -0.42 0.28 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.40 3.19 8.26 -40.82 -0.34 2.85 16 35 H 0.11 0.31 8.10 -51.93 -0.42 -0.11 16 36 H 0.10 0.49 8.11 -51.93 -0.42 0.07 16 37 H 0.14 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.14 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.15 1.30 6.99 -51.93 -0.36 0.94 16 40 H 0.14 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.06 1.32 7.29 -51.93 -0.38 0.94 16 44 H 0.03 0.55 5.44 -51.93 -0.28 0.27 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 360.63 15.07 5.43 5.43 Total: -1.00 -36.60 360.63 -8.93 -45.52 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -7.05 Total: 0.09 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -0.55 Total: -7.58 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: 0.05 Total: -47.15 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -2.01 Total: -29.89 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.14 Total: 17.62 kcal Atomic # 16 Polarization: 16.61 SS G_CDS: -0.66 Total: 15.95 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.60 -8.93 -45.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087646534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.608 kcal (2) G-P(sol) polarization free energy of solvation -36.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds