Wall clock time and date at job start Tue Mar 31 2020 05:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 H 1.08998 * 109.99639 * 305.30502 * 3 2 1 5 5 C 1.54327 * 109.88352 * 184.21114 * 3 2 1 6 6 H 1.09001 * 110.71827 * 336.92513 * 5 3 2 7 7 N 1.46498 * 110.72004 * 100.02551 * 5 3 2 8 8 C 1.34778 * 119.99560 * 205.00279 * 7 5 3 9 9 O 1.21279 * 120.00288 * 359.97438 * 8 7 5 10 10 C 1.50702 * 119.99967 * 180.02562 * 8 7 5 11 11 H 1.09003 * 109.63759 * 300.42531 * 10 8 7 12 12 C 1.53881 * 109.64757 * 60.71753 * 10 8 7 13 13 C 1.55053 * 106.62137 * 167.03772 * 12 10 8 14 14 S 1.83289 * 102.56468 * 317.56639 * 13 12 10 15 15 O 1.42098 * 109.35220 * 269.81312 * 14 13 12 16 16 O 1.42101 * 109.34966 * 136.61359 * 14 13 12 17 17 C 1.54162 * 109.64940 * 179.97438 * 10 8 7 18 18 C 1.55275 * 103.00606 * 218.46739 * 5 3 2 19 19 C 1.54906 * 101.52873 * 35.36155 * 18 5 3 20 20 N 1.47019 * 109.88405 * 66.39930 * 3 2 1 21 21 C 1.36934 * 125.64850 * 298.38166 * 20 3 2 22 22 H 1.08000 * 120.00220 * 334.96590 * 21 20 3 23 23 C 1.38816 * 119.99944 * 154.95907 * 21 20 3 24 24 N 1.31621 * 119.99619 * 159.50700 * 23 21 20 25 25 Si 1.86799 * 120.00104 * 339.51642 * 23 21 20 26 26 H 1.48495 * 109.47349 * 84.72212 * 25 23 21 27 27 H 1.48500 * 109.46876 * 204.72590 * 25 23 21 28 28 H 1.48502 * 109.46858 * 324.71860 * 25 23 21 29 29 H 1.09003 * 109.46886 * 292.25636 * 1 2 3 30 30 H 1.08997 * 109.47027 * 52.25111 * 1 2 3 31 31 H 1.08995 * 109.47053 * 172.25929 * 1 2 3 32 32 H 1.08996 * 109.47261 * 239.99738 * 2 1 3 33 33 H 1.09000 * 109.47219 * 119.99885 * 2 1 3 34 34 H 0.96996 * 120.00624 * 24.99728 * 7 5 3 35 35 H 1.08998 * 110.02988 * 286.32580 * 12 10 8 36 36 H 1.08992 * 110.02540 * 47.74884 * 12 10 8 37 37 H 1.08998 * 110.78472 * 199.30107 * 13 12 10 38 38 H 1.08994 * 110.78955 * 75.83666 * 13 12 10 39 39 H 1.09000 * 110.32116 * 331.14254 * 17 10 8 40 40 H 1.09004 * 110.31904 * 93.33299 * 17 10 8 41 41 H 1.09001 * 110.95957 * 277.33421 * 18 5 3 42 42 H 1.09002 * 111.10252 * 153.44696 * 18 5 3 43 43 H 1.09002 * 110.36649 * 204.23710 * 19 18 5 44 44 H 1.08992 * 110.37342 * 82.02218 * 19 18 5 45 45 H 0.96996 * 119.99607 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6062 1.9912 -0.8359 5 6 3.5796 1.4548 -0.1066 6 1 3.9978 0.5105 0.2419 7 7 4.0017 1.7304 -1.4821 8 6 5.2060 1.3074 -1.9149 9 8 5.9403 0.6990 -1.1656 10 6 5.6406 1.5914 -3.3297 11 1 4.9333 1.1427 -4.0272 12 6 5.6949 3.1121 -3.5589 13 6 6.4540 3.3327 -4.8927 14 16 7.8378 2.1375 -4.7664 15 8 8.9519 2.7701 -4.1518 16 8 7.9980 1.4695 -6.0104 17 6 7.0465 1.0055 -3.5676 18 6 3.9859 2.6187 0.8375 19 6 2.9255 2.4919 1.9595 20 7 1.6849 2.0984 1.2669 21 6 0.4126 2.3086 1.7275 22 1 -0.4106 2.3699 1.0311 23 6 0.1809 2.4428 3.0896 24 7 -0.9172 3.0304 3.5156 25 14 1.4276 1.7898 4.3179 26 1 2.4869 2.8072 4.5365 27 1 0.7478 1.4984 5.6056 28 1 2.0389 0.5445 3.7881 29 1 -0.3633 0.3892 0.9511 30 1 -0.3633 0.6291 -0.8126 31 1 -0.3633 -1.0183 -0.1384 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.4146 2.2173 -2.0813 35 1 4.6847 3.5147 -3.6333 36 1 6.2300 3.5940 -2.7407 37 1 6.8296 4.3538 -4.9597 38 1 5.8160 3.0974 -5.7445 39 1 7.6113 0.9862 -2.6355 40 1 6.9724 0.0021 -3.9870 41 1 3.9041 3.5796 0.3294 42 1 4.9914 2.4714 1.2318 43 1 2.7910 3.4485 2.4643 44 1 3.2202 1.7244 2.6751 45 1 -1.0793 3.1238 4.4673 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087646534.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:17 Heat of formation + Delta-G solvation = -113.193034 kcal Electronic energy + Delta-G solvation = -27234.134626 eV Core-core repulsion = 23378.265293 eV Total energy + Delta-G solvation = -3855.869333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.31859 -39.69387 -38.07177 -37.12649 -36.72310 -35.67618 -34.17340 -33.85832 -31.27319 -30.84877 -28.76669 -27.03414 -25.73566 -23.89503 -23.55748 -22.15902 -21.52460 -20.69459 -19.77058 -18.89924 -18.63355 -17.88649 -17.48757 -17.04889 -16.78044 -16.63606 -16.16443 -16.01098 -15.35811 -15.17483 -14.95949 -14.84994 -14.75835 -14.40630 -14.05367 -13.83537 -13.63775 -13.43082 -13.21625 -13.16759 -13.04298 -13.00665 -12.97739 -12.88468 -12.60579 -12.35205 -12.10604 -12.04066 -12.00323 -11.75846 -11.68152 -11.53763 -11.30795 -11.21192 -10.87492 -10.68058 -10.03095 -8.95328 -8.13850 -5.41695 -0.88697 1.30185 1.39721 1.45939 1.55210 1.61460 2.12088 2.43520 2.64791 3.07334 3.10838 3.27247 3.33567 3.58620 3.65609 3.69879 3.78580 3.86295 4.07542 4.14794 4.20494 4.25413 4.42964 4.49169 4.61078 4.61725 4.68044 4.70571 4.86770 4.87867 4.94230 4.98961 5.02324 5.04717 5.09737 5.17184 5.21203 5.38697 5.60771 5.69983 5.82791 6.18135 6.57069 6.81169 7.25020 7.58315 8.15916 9.05843 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.026269 B = 0.002784 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.628812 B =10055.136435 C =10333.315794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C 0.155 3.845 4 H 0.066 0.934 5 C 0.146 3.854 6 H 0.083 0.917 7 N -0.698 5.698 8 C 0.523 3.477 9 O -0.577 6.577 10 C -0.099 4.099 11 H 0.161 0.839 12 C -0.121 4.121 13 C -0.552 4.552 14 S 2.391 3.609 15 O -0.985 6.985 16 O -0.977 6.977 17 C -0.579 4.579 18 C -0.127 4.127 19 C 0.107 3.893 20 N -0.614 5.614 21 C -0.201 4.201 22 H 0.075 0.925 23 C -0.030 4.030 24 N -0.955 5.955 25 Si 0.928 3.072 26 H -0.277 1.277 27 H -0.314 1.314 28 H -0.275 1.275 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.034 0.966 34 H 0.420 0.580 35 H 0.140 0.860 36 H 0.089 0.911 37 H 0.160 0.840 38 H 0.174 0.826 39 H 0.134 0.866 40 H 0.155 0.845 41 H 0.092 0.908 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.011 0.989 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.659 -0.372 -20.338 23.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C 0.049 3.951 4 H 0.084 0.916 5 C 0.039 3.961 6 H 0.101 0.899 7 N -0.350 5.350 8 C 0.309 3.691 9 O -0.456 6.456 10 C -0.121 4.121 11 H 0.179 0.821 12 C -0.159 4.159 13 C -0.685 4.685 14 S 2.579 3.421 15 O -0.982 6.982 16 O -0.974 6.974 17 C -0.708 4.708 18 C -0.166 4.166 19 C -0.019 4.019 20 N -0.340 5.340 21 C -0.329 4.329 22 H 0.092 0.908 23 C -0.225 4.225 24 N -0.602 5.602 25 Si 0.759 3.241 26 H -0.203 1.203 27 H -0.243 1.243 28 H -0.201 1.201 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.258 0.742 35 H 0.159 0.841 36 H 0.107 0.893 37 H 0.178 0.822 38 H 0.191 0.809 39 H 0.152 0.848 40 H 0.173 0.827 41 H 0.110 0.890 42 H 0.095 0.905 43 H 0.062 0.938 44 H 0.029 0.971 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 13.952 -0.795 -20.120 24.497 hybrid contribution -0.665 -0.360 1.807 1.959 sum 13.287 -1.155 -18.313 22.655 Atomic orbital electron populations 1.21814 0.95937 1.00374 1.02379 1.21864 0.96603 0.97108 1.00533 1.21389 0.91681 0.92572 0.89435 0.91590 1.21754 0.93724 0.98309 0.82268 0.89906 1.45770 1.18515 1.57840 1.12920 1.20737 0.80869 0.77741 0.89758 1.90719 1.54137 1.42433 1.58350 1.21872 0.96733 0.98397 0.95122 0.82111 1.22400 1.06305 0.91893 0.95351 1.30458 1.15663 1.16101 1.06237 1.08811 0.78670 0.79032 0.75550 1.93573 1.50889 1.75573 1.78162 1.93567 1.87041 1.74869 1.41964 1.30459 1.06729 1.15995 1.17668 1.23060 0.97737 0.99671 0.96169 1.21954 0.87185 0.97317 0.95397 1.44876 1.00997 1.66855 1.21269 1.18471 0.84067 1.39850 0.90556 0.90753 1.25591 0.97459 1.01028 0.98404 1.69905 1.29327 1.46441 1.14558 0.86185 0.79296 0.79813 0.78856 1.20313 1.24338 1.20120 0.93177 0.92877 0.93134 0.90487 0.94671 0.74172 0.84145 0.89266 0.82233 0.80854 0.84785 0.82708 0.88962 0.90460 0.93784 0.97095 0.93157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.02 9.01 71.98 0.65 -4.37 16 2 C -0.12 -3.85 5.46 30.59 0.17 -3.68 16 3 C 0.16 4.92 3.00 45.34 0.14 5.05 16 4 H 0.07 1.88 7.72 -2.39 -0.02 1.86 16 5 C 0.15 3.90 2.84 46.22 0.13 4.04 16 6 H 0.08 2.56 7.25 -2.39 -0.02 2.54 16 7 N -0.70 -11.97 5.09 -436.72 -2.22 -14.19 16 8 C 0.52 9.43 7.14 87.66 0.63 10.06 16 9 O -0.58 -16.22 15.08 -3.03 -0.05 -16.27 16 10 C -0.10 -0.81 2.95 -10.85 -0.03 -0.84 16 11 H 0.16 0.11 8.14 -2.39 -0.02 0.09 16 12 C -0.12 -0.46 5.65 31.59 0.18 -0.28 16 13 C -0.55 -1.33 7.31 72.69 0.53 -0.80 16 14 S 2.39 29.23 6.10 -56.49 -0.34 28.89 16 15 O -0.98 -21.66 18.14 -127.49 -2.31 -23.97 16 16 O -0.98 -18.77 18.15 -127.49 -2.31 -21.09 16 17 C -0.58 -6.65 6.48 72.38 0.47 -6.18 16 18 C -0.13 -3.70 6.78 32.03 0.22 -3.49 16 19 C 0.11 4.22 4.75 86.85 0.41 4.64 16 20 N -0.61 -26.00 2.85 -668.27 -1.91 -27.90 16 21 C -0.20 -10.35 7.86 84.03 0.66 -9.69 16 22 H 0.07 4.10 7.27 -2.91 -0.02 4.08 16 23 C -0.03 -1.70 5.44 84.86 0.46 -1.23 16 24 N -0.95 -57.89 13.97 21.65 0.30 -57.59 16 25 Si 0.93 46.16 24.35 68.60 1.67 47.83 16 26 H -0.28 -13.17 6.73 99.48 0.67 -12.50 16 27 H -0.31 -16.12 7.11 99.48 0.71 -15.41 16 28 H -0.28 -13.49 6.79 99.48 0.68 -12.81 16 29 H 0.05 2.15 5.47 -2.39 -0.01 2.14 16 30 H 0.05 1.65 8.13 -2.39 -0.02 1.63 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.42 4.20 8.26 -92.71 -0.77 3.43 16 35 H 0.14 -0.22 8.10 -2.39 -0.02 -0.24 16 36 H 0.09 0.54 8.11 -2.39 -0.02 0.52 16 37 H 0.16 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.17 -0.52 8.14 -2.39 -0.02 -0.54 16 39 H 0.13 2.21 6.99 -2.39 -0.02 2.19 16 40 H 0.15 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.04 1.88 7.29 -2.39 -0.02 1.86 16 44 H 0.01 0.48 5.44 -2.39 -0.01 0.47 16 45 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -84.44 360.63 -2.40 -86.84 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: 0.17 Total: 4.23 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 4.61 Total: -6.78 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -3.83 Total: -99.68 kcal Atomic # 8 Polarization: -56.66 SS G_CDS: -4.67 Total: -61.33 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.67 Total: 47.83 kcal Atomic # 16 Polarization: 29.23 SS G_CDS: -0.34 Total: 28.89 kcal Total: -84.44 -2.40 -86.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087646534.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.355 kcal (2) G-P(sol) polarization free energy of solvation -84.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds