Wall clock time and date at job start Tue Mar 31 2020 07:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47086 * 2 1 4 4 C 1.50704 * 109.46561 * 119.99476 * 2 1 3 5 5 O 1.21284 * 119.99660 * 100.00199 * 4 2 1 6 6 N 1.34773 * 119.99885 * 279.99373 * 4 2 1 7 7 C 1.47386 * 125.73938 * 180.02562 * 6 4 2 8 8 C 1.55410 * 106.73911 * 179.06571 * 7 6 4 9 9 H 1.09004 * 112.75898 * 146.41485 * 8 7 6 10 10 C 1.52911 * 106.57100 * 270.29190 * 8 7 6 11 11 C 1.51878 * 111.49705 * 169.08988 * 10 8 7 12 12 N 1.44348 * 113.47877 * 321.32239 * 11 10 8 13 13 C 1.36938 * 116.42305 * 187.48382 * 12 11 10 14 14 H 1.07997 * 120.00023 * 152.71239 * 13 12 11 15 15 C 1.38817 * 120.00073 * 332.70338 * 13 12 11 16 16 N 1.31615 * 119.99706 * 335.94531 * 15 13 12 17 17 Si 1.86794 * 120.00111 * 155.94334 * 15 13 12 18 18 H 1.48506 * 109.46898 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46930 * 119.99928 * 17 15 13 20 20 H 1.48491 * 109.47312 * 240.00424 * 17 15 13 21 21 C 1.43975 * 127.15201 * 7.50463 * 12 11 10 22 22 C 1.49789 * 116.29820 * 2.85252 * 21 12 11 23 23 H 1.08997 * 109.25283 * 141.40648 * 22 21 12 24 24 C 1.47932 * 125.74312 * 359.70499 * 6 4 2 25 25 S 1.81394 * 109.47090 * 239.99232 * 2 1 3 26 26 C 1.81400 * 101.92230 * 60.00380 * 25 2 1 27 27 O 1.42095 * 108.58242 * 305.51671 * 25 2 1 28 28 O 1.42100 * 108.57728 * 174.48886 * 25 2 1 29 29 H 1.08999 * 109.46866 * 300.00830 * 1 2 3 30 30 H 1.09004 * 109.46894 * 60.00274 * 1 2 3 31 31 H 1.08998 * 109.47086 * 179.97438 * 1 2 3 32 32 H 1.09002 * 110.00466 * 298.39010 * 7 6 4 33 33 H 1.09003 * 110.00358 * 59.74898 * 7 6 4 34 34 H 1.09009 * 109.03602 * 290.44055 * 10 8 7 35 35 H 1.08993 * 109.04168 * 49.30851 * 10 8 7 36 36 H 1.09005 * 108.95199 * 199.97739 * 11 10 8 37 37 H 1.09000 * 108.02011 * 82.01171 * 11 10 8 38 38 H 0.97004 * 120.00086 * 179.97438 * 16 15 13 39 39 H 1.08994 * 108.11659 * 241.07921 * 21 12 11 40 40 H 1.09000 * 108.11837 * 124.61869 * 21 12 11 41 41 H 1.09002 * 110.56082 * 274.13633 * 24 6 4 42 42 H 1.09001 * 110.56681 * 36.99210 * 24 6 4 43 43 H 1.09006 * 109.47336 * 59.99489 * 26 25 2 44 44 H 1.08995 * 109.47377 * 179.97438 * 26 25 2 45 45 H 1.08997 * 109.47278 * 300.00203 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.4063 -1.8616 1.1560 6 7 2.0658 -0.0662 2.4139 7 6 2.5309 -0.6357 3.6913 8 6 2.4024 0.4890 4.7560 9 1 2.1464 0.1069 5.7443 10 6 3.7289 1.2497 4.7490 11 6 3.6378 2.5347 5.5536 12 7 2.3775 3.2214 5.3998 13 6 2.2866 4.4632 5.9697 14 1 1.6088 5.1972 5.5597 15 6 3.0656 4.7785 7.0746 16 7 3.5153 3.8209 7.8576 17 14 3.4756 6.5618 7.4501 18 1 2.8539 7.4389 6.4256 19 1 2.9492 6.9187 8.7920 20 1 4.9490 6.7455 7.4314 21 6 1.2053 2.7440 4.7135 22 6 1.2848 1.3590 4.1487 23 1 0.3263 0.8588 4.2871 24 6 1.6484 1.3336 2.6480 25 16 2.1347 -0.8553 -1.4810 26 6 1.4230 0.1512 -2.8118 27 8 1.5479 -2.1486 -1.5282 28 8 3.5496 -0.7332 -1.5283 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.9077 -1.4856 3.9695 33 1 3.5713 -0.9487 3.6032 34 1 4.5080 0.6098 5.1635 35 1 3.9881 1.5030 3.7211 36 1 4.4415 3.2033 5.2450 37 1 3.7749 2.2843 6.6055 38 1 4.0599 4.0411 8.6295 39 1 0.9877 3.4313 3.8961 40 1 0.3673 2.7784 5.4098 41 1 2.4702 2.0183 2.4386 42 1 0.7784 1.5806 2.0395 43 1 1.7895 1.1745 -2.7292 44 1 1.7160 -0.2625 -3.7767 45 1 0.3362 0.1468 -2.7291 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088015097.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:57 Heat of formation + Delta-G solvation = -67.593498 kcal Electronic energy + Delta-G solvation = -27672.635763 eV Core-core repulsion = 23818.743774 eV Total energy + Delta-G solvation = -3853.891989 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.60759 -38.69055 -37.22005 -36.20668 -35.75775 -34.09870 -32.52498 -31.59344 -30.33669 -29.82289 -27.99631 -25.97547 -25.07989 -23.46919 -22.28944 -21.62032 -19.95710 -18.86135 -18.10128 -17.55637 -17.27769 -16.86700 -16.36261 -16.07169 -15.78274 -15.22710 -14.90248 -14.73694 -14.11044 -13.91746 -13.72930 -13.66564 -13.63227 -13.32012 -13.18346 -12.96366 -12.85086 -12.51368 -12.30167 -12.26023 -12.20686 -12.16199 -11.86420 -11.35974 -11.30385 -11.16776 -10.89004 -10.83032 -10.58485 -10.35043 -10.27469 -10.20861 -9.80771 -9.74919 -9.64046 -8.73719 -8.54575 -6.68455 -5.68513 -3.34291 -0.40860 2.28043 2.41449 2.66486 3.33182 3.42151 3.44059 3.46511 3.67209 3.99190 4.17720 4.38723 4.43095 4.50727 4.61237 4.66227 4.74221 4.94511 4.98541 5.11313 5.24008 5.24904 5.30910 5.39801 5.44096 5.53390 5.65544 5.76412 5.80985 5.96213 5.99936 6.05710 6.26764 6.45567 6.48700 6.58030 6.69604 6.76326 7.23921 7.31584 7.75708 7.81484 7.87054 8.46890 9.22598 9.91777 10.21338 11.17503 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.024505 B = 0.002910 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.354976 B = 9620.010300 C = 9966.967310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.614 4.614 3 H 0.155 0.845 4 C 0.557 3.443 5 O -0.533 6.533 6 N -0.602 5.602 7 C 0.106 3.894 8 C -0.080 4.080 9 H 0.101 0.899 10 C -0.124 4.124 11 C 0.156 3.844 12 N -0.585 5.585 13 C -0.271 4.271 14 H 0.066 0.934 15 C 0.007 3.993 16 N -0.888 5.888 17 Si 0.898 3.102 18 H -0.277 1.277 19 H -0.291 1.291 20 H -0.288 1.288 21 C 0.176 3.824 22 C -0.097 4.097 23 H 0.076 0.924 24 C 0.099 3.901 25 S 2.450 3.550 26 C -0.662 4.662 27 O -0.914 6.914 28 O -0.928 6.928 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.020 0.980 37 H 0.080 0.920 38 H 0.253 0.747 39 H 0.014 0.986 40 H 0.025 0.975 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.954 -5.856 -17.238 19.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.722 4.722 3 H 0.173 0.827 4 C 0.342 3.658 5 O -0.411 6.411 6 N -0.335 5.335 7 C -0.016 4.016 8 C -0.099 4.099 9 H 0.119 0.881 10 C -0.162 4.162 11 C 0.031 3.969 12 N -0.310 5.310 13 C -0.400 4.400 14 H 0.084 0.916 15 C -0.193 4.193 16 N -0.531 5.531 17 Si 0.728 3.272 18 H -0.202 1.202 19 H -0.218 1.218 20 H -0.215 1.215 21 C 0.050 3.950 22 C -0.117 4.117 23 H 0.094 0.906 24 C -0.023 4.023 25 S 2.627 3.373 26 C -0.811 4.811 27 O -0.911 6.911 28 O -0.925 6.925 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.038 0.962 37 H 0.097 0.903 38 H 0.063 0.937 39 H 0.031 0.969 40 H 0.043 0.957 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.149 0.851 44 H 0.151 0.849 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.134 -7.306 -17.279 19.738 hybrid contribution -0.203 1.928 0.331 1.967 sum -6.337 -5.378 -16.948 18.876 Atomic orbital electron populations 1.21652 0.87613 1.05206 1.05188 1.30695 1.09025 1.15630 1.16840 0.82692 1.18680 0.78597 0.85755 0.82729 1.90858 1.48946 1.16454 1.84874 1.48535 1.62834 1.14345 1.07743 1.22552 1.00101 0.96828 0.82084 1.22082 0.96472 0.93743 0.97645 0.88091 1.21749 0.95300 0.98546 1.00608 1.20267 0.86384 0.89327 1.00928 1.42664 1.07596 1.18400 1.62336 1.19139 1.23993 0.88715 1.08178 0.91629 1.24984 1.01741 0.97361 0.95191 1.70000 1.37975 1.30876 1.14292 0.86295 0.78047 0.85139 0.77715 1.20218 1.21779 1.21497 1.19240 0.90816 0.90019 0.94929 1.21655 0.98866 0.98394 0.92743 0.90577 1.22753 1.00118 0.81779 0.97684 1.07423 0.75978 0.76654 0.77280 1.30399 1.14318 1.16802 1.19587 1.93586 1.79153 1.33402 1.84979 1.93600 1.26779 1.86705 1.85391 0.89514 0.90038 0.89653 0.91346 0.90813 0.92028 0.93476 0.96211 0.90261 0.93675 0.96877 0.95741 0.90112 0.90364 0.85073 0.84867 0.84982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 8.83 37.16 0.33 -0.58 16 2 C -0.61 -5.69 2.39 -27.88 -0.07 -5.76 16 3 H 0.16 0.96 7.68 -51.93 -0.40 0.56 16 4 C 0.56 7.93 7.03 -10.99 -0.08 7.85 16 5 O -0.53 -9.64 15.98 -3.36 -0.05 -9.69 16 6 N -0.60 -8.27 3.34 -169.42 -0.57 -8.84 16 7 C 0.11 1.51 6.25 -2.28 -0.01 1.50 16 8 C -0.08 -1.24 3.60 -88.81 -0.32 -1.56 16 9 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 10 C -0.12 -2.17 4.83 -27.35 -0.13 -2.30 16 11 C 0.16 3.50 5.09 -5.76 -0.03 3.48 16 12 N -0.59 -13.63 3.23 -179.51 -0.58 -14.21 16 13 C -0.27 -7.08 9.27 -15.06 -0.14 -7.22 16 14 H 0.07 1.70 7.94 -52.49 -0.42 1.28 16 15 C 0.01 0.19 4.95 -17.43 -0.09 0.11 16 16 N -0.89 -24.68 10.89 55.49 0.60 -24.07 16 17 Si 0.90 20.95 29.62 -169.99 -5.03 15.92 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 C 0.18 3.31 5.75 -6.97 -0.04 3.27 16 22 C -0.10 -1.44 2.85 -90.88 -0.26 -1.69 16 23 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 24 C 0.10 1.24 5.18 -2.50 -0.01 1.23 16 25 S 2.45 24.91 4.32 -107.50 -0.46 24.45 16 26 C -0.66 -2.91 10.17 101.05 1.03 -1.89 16 27 O -0.91 -12.67 17.40 -62.66 -1.09 -13.76 16 28 O -0.93 -13.25 18.10 -57.83 -1.05 -14.29 16 29 H 0.09 0.55 6.54 -51.93 -0.34 0.21 16 30 H 0.08 0.22 6.56 -51.93 -0.34 -0.12 16 31 H 0.08 0.63 8.06 -51.93 -0.42 0.22 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.08 7.78 -51.93 -0.40 0.68 16 34 H 0.06 1.01 8.14 -51.92 -0.42 0.58 16 35 H 0.05 0.80 6.68 -51.93 -0.35 0.45 16 36 H 0.02 0.48 8.11 -51.93 -0.42 0.06 16 37 H 0.08 2.05 5.79 -51.93 -0.30 1.75 16 38 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 39 H 0.01 0.24 7.81 -51.93 -0.41 -0.16 16 40 H 0.02 0.49 8.13 -51.93 -0.42 0.07 16 41 H 0.08 1.09 7.22 -51.93 -0.37 0.72 16 42 H 0.08 0.75 6.06 -51.93 -0.31 0.43 16 43 H 0.13 0.32 8.14 -51.92 -0.42 -0.10 16 44 H 0.13 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.13 0.28 6.87 -51.93 -0.36 -0.07 16 LS Contribution 358.74 15.07 5.41 5.41 Total: -1.00 -36.48 358.74 -9.58 -46.06 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -6.93 Total: -3.40 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 0.18 Total: -3.56 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: -0.54 Total: -47.11 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -2.19 Total: -37.75 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Atomic # 16 Polarization: 24.91 SS G_CDS: -0.46 Total: 24.45 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.48 -9.58 -46.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088015097.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.538 kcal (2) G-P(sol) polarization free energy of solvation -36.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds