Wall clock time and date at job start Tue Mar 31 2020 07:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47533 * 2 1 4 4 C 1.50704 * 109.47064 * 239.99969 * 2 1 3 5 5 O 1.21279 * 120.00202 * 265.00481 * 4 2 1 6 6 N 1.34775 * 119.99762 * 85.00247 * 4 2 1 7 7 C 1.47759 * 125.82180 * 179.71672 * 6 4 2 8 8 C 1.56200 * 104.00666 * 154.06284 * 7 6 4 9 9 H 1.09001 * 113.91385 * 161.26259 * 8 7 6 10 10 C 1.52884 * 106.67458 * 286.46162 * 8 7 6 11 11 C 1.51602 * 111.55531 * 168.35289 * 10 8 7 12 12 N 1.44321 * 113.11356 * 320.91619 * 11 10 8 13 13 C 1.36941 * 116.35550 * 187.26070 * 12 11 10 14 14 H 1.07995 * 120.00556 * 152.59986 * 13 12 11 15 15 C 1.38820 * 119.99667 * 332.59787 * 13 12 11 16 16 N 1.31614 * 119.99769 * 335.12611 * 15 13 12 17 17 Si 1.86794 * 119.99878 * 155.12134 * 15 13 12 18 18 H 1.48502 * 109.47031 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.47153 * 120.00051 * 17 15 13 20 20 H 1.48498 * 109.47298 * 240.00187 * 17 15 13 21 21 C 1.43995 * 127.29397 * 7.27803 * 12 11 10 22 22 C 1.49953 * 116.09528 * 2.48915 * 21 12 11 23 23 H 1.08998 * 108.82954 * 141.04708 * 22 21 12 24 24 C 1.47624 * 125.81935 * 0.02607 * 6 4 2 25 25 S 1.81403 * 109.47106 * 120.00248 * 2 1 3 26 26 C 1.81393 * 101.92157 * 304.99915 * 25 2 1 27 27 O 1.42104 * 108.57454 * 59.48646 * 25 2 1 28 28 O 1.42098 * 108.57760 * 190.50945 * 25 2 1 29 29 H 1.09002 * 109.47370 * 299.99829 * 1 2 3 30 30 H 1.08998 * 109.47310 * 59.99538 * 1 2 3 31 31 H 1.08999 * 109.47533 * 180.02562 * 1 2 3 32 32 H 1.08994 * 110.49914 * 272.80562 * 7 6 4 33 33 H 1.08999 * 110.49856 * 35.48704 * 7 6 4 34 34 H 1.09003 * 109.06295 * 47.81334 * 10 8 7 35 35 H 1.09004 * 109.05922 * 288.89016 * 10 8 7 36 36 H 1.08998 * 108.74878 * 199.97834 * 11 10 8 37 37 H 1.08994 * 108.65887 * 81.79104 * 11 10 8 38 38 H 0.97007 * 119.99744 * 180.02562 * 16 15 13 39 39 H 1.08995 * 108.16034 * 240.76176 * 21 12 11 40 40 H 1.08998 * 108.15371 * 124.19960 * 21 12 11 41 41 H 1.09007 * 110.08167 * 299.81754 * 24 6 4 42 42 H 1.08999 * 110.08062 * 61.37965 * 24 6 4 43 43 H 1.08995 * 109.47435 * 179.97438 * 26 25 2 44 44 H 1.08997 * 109.47112 * 299.99947 * 26 25 2 45 45 H 1.09005 * 109.47438 * 60.00188 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.3206 -1.8872 -1.1761 6 7 2.1610 -0.0380 -2.3914 7 6 2.6442 -0.6024 -3.6686 8 6 1.9852 0.3047 -4.7561 9 1 2.4695 0.2486 -5.7311 10 6 0.5050 -0.0745 -4.8056 11 6 -0.2989 0.9233 -5.6157 12 7 0.1190 2.2891 -5.4083 13 6 -0.6584 3.2571 -5.9861 14 1 -0.7038 4.2444 -5.5509 15 6 -1.3883 2.9692 -7.1313 16 7 -0.9990 2.0014 -7.9338 17 14 -2.9229 3.9554 -7.5332 18 1 -3.1433 4.9791 -6.4803 19 1 -2.7503 4.6263 -8.8469 20 1 -4.0948 3.0453 -7.5924 21 6 1.2619 2.7480 -4.6623 22 6 2.1417 1.6819 -4.0812 23 1 3.1819 1.9932 -4.1770 24 6 1.8494 1.3895 -2.6022 25 16 2.1346 -0.8552 1.4811 26 6 1.2998 0.0575 2.8079 27 8 1.6407 -2.1876 1.4678 28 8 3.5341 -0.6351 1.5913 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.7310 -0.5422 -3.7256 33 1 2.3117 -1.6344 -3.7801 34 1 0.1118 -0.1074 -3.7895 35 1 0.4054 -1.0619 -5.2565 36 1 -1.3496 0.8327 -5.3403 37 1 -0.1922 0.6808 -6.6729 38 1 -1.5088 1.8005 -8.7342 39 1 0.9050 3.3761 -3.8462 40 1 1.8700 3.3687 -5.3204 41 1 0.7984 1.5793 -2.3838 42 1 2.4820 2.0085 -1.9661 43 1 1.5821 -0.3642 3.7725 44 1 1.5949 1.1060 2.7690 45 1 0.2202 -0.0211 2.6795 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088015098.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:03 Heat of formation + Delta-G solvation = -66.329183 kcal Electronic energy + Delta-G solvation = -27880.801237 eV Core-core repulsion = 24026.964073 eV Total energy + Delta-G solvation = -3853.837164 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.61461 -38.65657 -37.20220 -36.19160 -35.73416 -34.02001 -32.49110 -31.58724 -30.38603 -29.78767 -27.98909 -25.92370 -25.04793 -23.54837 -22.12373 -21.62021 -19.92442 -18.83992 -18.12978 -17.59236 -17.13840 -16.93414 -16.39759 -15.97219 -15.88708 -15.20250 -14.92486 -14.52785 -14.15274 -13.89884 -13.79532 -13.61733 -13.58161 -13.24680 -13.05155 -12.87438 -12.75816 -12.51130 -12.34949 -12.29751 -12.18859 -12.12896 -11.83446 -11.36511 -11.29325 -11.19888 -10.85405 -10.82206 -10.62583 -10.34138 -10.28008 -10.15054 -9.81827 -9.71190 -9.63361 -8.72562 -8.53065 -6.68495 -5.69392 -3.34582 -0.38797 2.30572 2.43235 2.69701 3.32478 3.41567 3.43462 3.47481 3.69991 4.01812 4.21444 4.40837 4.43204 4.56347 4.63978 4.67908 4.76540 4.97853 5.02658 5.19949 5.25199 5.28529 5.31226 5.43979 5.47568 5.56912 5.72180 5.75303 5.84916 5.89079 6.03921 6.12315 6.23651 6.46747 6.51363 6.59448 6.69805 6.77224 7.23143 7.34283 7.75343 7.85296 7.86669 8.46570 9.22130 9.91580 10.21073 11.16651 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.022757 B = 0.003118 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.119126 B = 8978.363026 C = 9445.589348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.611 4.611 3 H 0.153 0.847 4 C 0.556 3.444 5 O -0.530 6.530 6 N -0.601 5.601 7 C 0.104 3.896 8 C -0.082 4.082 9 H 0.104 0.896 10 C -0.121 4.121 11 C 0.156 3.844 12 N -0.585 5.585 13 C -0.271 4.271 14 H 0.066 0.934 15 C 0.007 3.993 16 N -0.887 5.887 17 Si 0.897 3.103 18 H -0.277 1.277 19 H -0.291 1.291 20 H -0.289 1.289 21 C 0.176 3.824 22 C -0.100 4.100 23 H 0.075 0.925 24 C 0.104 3.896 25 S 2.447 3.553 26 C -0.661 4.661 27 O -0.909 6.909 28 O -0.933 6.933 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.017 0.983 37 H 0.082 0.918 38 H 0.253 0.747 39 H 0.013 0.987 40 H 0.025 0.975 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.132 0.868 44 H 0.130 0.870 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.707 -1.481 17.430 18.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.719 4.719 3 H 0.171 0.829 4 C 0.341 3.659 5 O -0.407 6.407 6 N -0.334 5.334 7 C -0.018 4.018 8 C -0.101 4.101 9 H 0.122 0.878 10 C -0.159 4.159 11 C 0.031 3.969 12 N -0.310 5.310 13 C -0.401 4.401 14 H 0.083 0.917 15 C -0.193 4.193 16 N -0.530 5.530 17 Si 0.727 3.273 18 H -0.202 1.202 19 H -0.218 1.218 20 H -0.215 1.215 21 C 0.050 3.950 22 C -0.119 4.119 23 H 0.094 0.906 24 C -0.019 4.019 25 S 2.624 3.376 26 C -0.810 4.810 27 O -0.906 6.906 28 O -0.930 6.930 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.035 0.965 37 H 0.099 0.901 38 H 0.063 0.937 39 H 0.031 0.969 40 H 0.043 0.957 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.151 0.849 44 H 0.149 0.851 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.406 -2.950 17.466 18.520 hybrid contribution -1.409 1.476 -0.346 2.070 sum 3.997 -1.474 17.120 17.642 Atomic orbital electron populations 1.21644 0.87430 1.05231 1.05400 1.30660 1.09171 1.15358 1.16742 0.82913 1.18688 0.78265 0.86097 0.82812 1.90872 1.50961 1.14617 1.84283 1.48534 1.63737 1.11819 1.09283 1.22822 0.98399 0.98830 0.81723 1.22305 0.97315 0.93064 0.97416 0.87772 1.21604 0.93963 0.99898 1.00459 1.20244 0.93824 0.81989 1.00849 1.42686 1.26209 1.02821 1.59272 1.19141 1.20961 0.94397 1.05600 0.91663 1.24971 1.00682 0.98546 0.95063 1.70001 1.38046 1.33066 1.11903 0.86314 0.83660 0.79533 0.77801 1.20223 1.21768 1.21516 1.19331 0.88473 0.92818 0.94381 1.21524 1.00862 0.97000 0.92510 0.90627 1.22331 1.01354 0.80321 0.97869 1.07495 0.76084 0.76655 0.77376 1.30393 1.15391 1.15829 1.19433 1.93605 1.81518 1.30608 1.84916 1.93591 1.27722 1.86451 1.85230 0.89996 0.89349 0.89696 0.91183 0.89963 0.93455 0.92399 0.96498 0.90128 0.93673 0.96892 0.95714 0.90361 0.91270 0.84907 0.85134 0.84853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.88 37.16 0.33 -0.78 16 2 C -0.61 -5.95 2.66 -27.88 -0.07 -6.03 16 3 H 0.15 0.97 7.33 -51.92 -0.38 0.59 16 4 C 0.56 8.08 6.98 -10.98 -0.08 8.00 16 5 O -0.53 -9.67 15.74 -9.37 -0.15 -9.82 16 6 N -0.60 -8.36 2.80 -169.40 -0.47 -8.83 16 7 C 0.10 1.46 6.25 -1.64 -0.01 1.45 16 8 C -0.08 -1.26 3.77 -88.36 -0.33 -1.59 16 9 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 10 C -0.12 -2.15 4.98 -27.50 -0.14 -2.28 16 11 C 0.16 3.51 5.13 -5.91 -0.03 3.48 16 12 N -0.59 -13.60 3.23 -179.59 -0.58 -14.18 16 13 C -0.27 -7.09 9.26 -15.05 -0.14 -7.23 16 14 H 0.07 1.69 7.94 -52.49 -0.42 1.27 16 15 C 0.01 0.20 4.94 -17.43 -0.09 0.11 16 16 N -0.89 -24.65 10.92 55.49 0.61 -24.04 16 17 Si 0.90 20.92 29.62 -169.99 -5.04 15.88 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 C 0.18 3.32 5.67 -6.89 -0.04 3.28 16 22 C -0.10 -1.47 2.68 -91.23 -0.24 -1.72 16 23 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 24 C 0.10 1.31 4.88 -3.13 -0.02 1.29 16 25 S 2.45 25.12 4.52 -107.50 -0.49 24.63 16 26 C -0.66 -3.07 10.01 101.05 1.01 -2.06 16 27 O -0.91 -13.07 17.21 -64.29 -1.11 -14.18 16 28 O -0.93 -12.82 18.10 -57.83 -1.05 -13.86 16 29 H 0.08 0.32 6.39 -51.93 -0.33 -0.01 16 30 H 0.09 0.78 7.28 -51.93 -0.38 0.40 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 1.21 7.93 -51.93 -0.41 0.80 16 34 H 0.05 0.82 6.77 -51.93 -0.35 0.47 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 37 H 0.08 2.09 5.75 -51.93 -0.30 1.79 16 38 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 39 H 0.01 0.24 7.78 -51.93 -0.40 -0.16 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 1.01 6.97 -51.93 -0.36 0.65 16 42 H 0.07 0.70 7.90 -51.93 -0.41 0.29 16 43 H 0.13 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.13 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.13 0.37 6.78 -51.92 -0.35 0.02 16 LS Contribution 359.95 15.07 5.42 5.42 Total: -1.00 -36.31 359.95 -9.73 -46.03 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -7.04 Total: -2.99 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 0.16 Total: -4.07 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -0.45 Total: -47.05 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -2.30 Total: -37.86 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.04 Total: 15.88 kcal Atomic # 16 Polarization: 25.12 SS G_CDS: -0.49 Total: 24.63 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.31 -9.73 -46.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088015098.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.298 kcal (2) G-P(sol) polarization free energy of solvation -36.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds