Wall clock time and date at job start Tue Mar 31 2020 06:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 110.00057 * 2 1 4 4 C 1.54328 * 109.88166 * 238.89708 * 2 1 3 5 5 H 1.08997 * 110.72155 * 336.75683 * 4 2 1 6 6 N 1.46505 * 110.86937 * 99.95749 * 4 2 1 7 7 C 1.34773 * 120.00300 * 202.45323 * 6 4 2 8 8 O 1.21283 * 119.99710 * 359.97438 * 7 6 4 9 9 C 1.50696 * 120.00081 * 179.97438 * 7 6 4 10 10 H 1.08998 * 109.55388 * 325.00027 * 9 7 6 11 11 C 1.53042 * 109.54842 * 85.19424 * 9 7 6 12 12 C 1.52570 * 109.99322 * 183.40277 * 11 9 7 13 13 C 1.52595 * 110.72976 * 290.15697 * 12 11 9 14 14 C 1.53037 * 109.98203 * 69.95088 * 13 12 11 15 15 S 1.81667 * 108.99865 * 296.34956 * 14 13 12 16 16 O 1.42100 * 108.66466 * 299.96893 * 15 14 13 17 17 O 1.42100 * 108.74335 * 168.66352 * 15 14 13 18 18 C 1.55149 * 102.94477 * 218.39185 * 4 2 1 19 19 C 1.54905 * 101.58313 * 35.50467 * 18 4 2 20 20 N 1.47030 * 109.88177 * 121.09622 * 2 1 3 21 21 C 1.36936 * 125.64558 * 298.31787 * 20 2 1 22 22 H 1.08003 * 119.99973 * 341.53925 * 21 20 2 23 23 C 1.38814 * 120.00106 * 161.53178 * 21 20 2 24 24 N 1.31620 * 119.99890 * 157.60279 * 23 21 20 25 25 Si 1.86803 * 119.99847 * 337.60961 * 23 21 20 26 26 H 1.48498 * 109.47047 * 84.53788 * 25 23 21 27 27 H 1.48503 * 109.46914 * 204.53779 * 25 23 21 28 28 H 1.48496 * 109.46978 * 324.53983 * 25 23 21 29 29 H 1.09001 * 109.46992 * 181.09734 * 1 2 3 30 30 H 1.08998 * 109.47110 * 301.09765 * 1 2 3 31 31 H 1.08996 * 109.46909 * 61.09623 * 1 2 3 32 32 H 0.97004 * 119.99462 * 22.45264 * 6 4 2 33 33 H 1.08995 * 109.38300 * 303.65967 * 11 9 7 34 34 H 1.08997 * 109.38425 * 63.34491 * 11 9 7 35 35 H 1.08998 * 109.23165 * 169.81267 * 12 11 9 36 36 H 1.09003 * 109.13961 * 50.44412 * 12 11 9 37 37 H 1.08993 * 109.38290 * 309.79478 * 13 12 11 38 38 H 1.08999 * 109.38243 * 190.10700 * 13 12 11 39 39 H 1.09000 * 109.54322 * 176.49505 * 14 13 12 40 40 H 1.09000 * 109.54990 * 56.21460 * 14 13 12 41 41 H 1.09001 * 111.00680 * 153.58405 * 18 4 2 42 42 H 1.09005 * 111.00593 * 277.39284 * 18 4 2 43 43 H 1.08999 * 110.36869 * 81.82603 * 19 18 4 44 44 H 1.09006 * 110.36965 * 204.04281 * 19 18 4 45 45 H 0.96994 * 119.99461 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7497 -1.2427 5 1 1.3051 -1.4461 -1.6181 6 7 2.4549 0.1928 -2.2905 7 6 2.5064 -0.2101 -3.5755 8 8 2.2219 -1.3531 -3.8645 9 6 2.9174 0.7596 -4.6534 10 1 2.5494 1.7557 -4.4075 11 6 4.4437 0.7895 -4.7604 12 6 4.8742 1.8297 -5.7902 13 6 4.5059 1.3782 -7.2005 14 6 2.9871 1.4208 -7.3833 15 16 2.2208 0.2300 -6.2454 16 8 2.7122 -1.0687 -6.5475 17 8 0.8179 0.4553 -6.2254 18 6 3.2875 -1.5144 -0.6923 19 6 2.8145 -1.8795 0.7368 20 7 2.0300 -0.7141 1.1840 21 6 1.8050 -0.3556 2.4863 22 1 1.4856 0.6488 2.7224 23 6 1.9872 -1.2830 3.5029 24 7 2.2086 -0.8745 4.7344 25 14 1.9185 -3.1107 3.1232 26 1 3.2490 -3.5679 2.6479 27 1 1.5481 -3.8580 4.3519 28 1 0.9037 -3.3592 2.0679 29 1 -0.3633 -1.0275 0.0197 30 1 -0.3633 0.5308 0.8800 31 1 -0.3633 0.4967 -0.8996 32 1 2.6828 1.1069 -2.0593 33 1 4.8696 1.0418 -3.7894 34 1 4.8041 -0.1922 -5.0677 35 1 5.9532 1.9708 -5.7285 36 1 4.3755 2.7745 -5.5737 37 1 4.8609 0.3599 -7.3586 38 1 4.9765 2.0408 -7.9269 39 1 2.7360 1.1572 -8.4107 40 1 2.6211 2.4236 -7.1629 41 1 3.4852 -2.4112 -1.2795 42 1 4.1656 -0.8692 -0.6610 43 1 2.1885 -2.7715 0.7130 44 1 3.6716 -2.0358 1.3919 45 1 2.3363 -1.5226 5.4447 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088618778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:24 Heat of formation + Delta-G solvation = -81.601030 kcal Electronic energy + Delta-G solvation = -27552.578586 eV Core-core repulsion = 23698.079185 eV Total energy + Delta-G solvation = -3854.499401 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -40.24411 -38.20663 -37.56864 -36.89867 -36.19443 -34.33326 -32.70026 -31.96540 -30.75639 -29.51175 -28.37104 -25.21626 -24.31069 -23.91644 -21.62732 -21.48947 -20.60138 -19.85695 -19.01674 -17.70834 -17.32689 -16.85500 -16.58915 -16.00578 -15.92286 -15.42179 -15.09187 -14.89021 -14.58308 -14.31853 -14.14435 -13.75168 -13.53170 -13.30429 -13.02132 -12.83230 -12.43731 -12.26436 -12.24450 -12.17484 -12.10106 -11.95882 -11.81397 -11.61742 -11.49628 -11.24868 -11.05636 -10.92016 -10.81781 -10.64806 -10.51097 -10.22656 -10.03568 -9.96975 -9.46994 -9.00012 -8.71091 -7.12806 -5.98273 -3.29618 -0.40047 2.26441 2.37892 2.79312 3.34289 3.48368 3.49333 3.51193 3.58856 3.99634 4.03591 4.15778 4.28858 4.37374 4.49135 4.52749 4.68557 4.86144 4.89398 4.99572 5.07168 5.16754 5.22476 5.24768 5.28690 5.41488 5.47218 5.54486 5.62254 5.79020 5.87416 5.98399 6.13526 6.21433 6.34908 6.37399 6.58079 6.68484 6.72448 6.91799 7.32144 7.65067 7.97203 8.27160 8.78183 9.64645 10.11416 11.17541 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.026612 B = 0.002994 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.917755 B = 9349.905034 C = 9482.063646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.156 3.844 3 H 0.047 0.953 4 C 0.130 3.870 5 H 0.101 0.899 6 N -0.700 5.700 7 C 0.539 3.461 8 O -0.523 6.523 9 C -0.607 4.607 10 H 0.155 0.845 11 C -0.100 4.100 12 C -0.139 4.139 13 C -0.113 4.113 14 C -0.611 4.611 15 S 2.444 3.556 16 O -0.906 6.906 17 O -0.932 6.932 18 C -0.140 4.140 19 C 0.111 3.889 20 N -0.601 5.601 21 C -0.240 4.240 22 H 0.093 0.907 23 C 0.024 3.976 24 N -0.908 5.908 25 Si 0.881 3.119 26 H -0.285 1.285 27 H -0.302 1.302 28 H -0.275 1.275 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.403 0.597 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.029 0.971 44 H 0.064 0.936 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.218 9.099 -24.863 27.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.049 3.951 3 H 0.065 0.935 4 C 0.025 3.975 5 H 0.119 0.881 6 N -0.350 5.350 7 C 0.322 3.678 8 O -0.399 6.399 9 C -0.716 4.716 10 H 0.172 0.828 11 C -0.138 4.138 12 C -0.176 4.176 13 C -0.151 4.151 14 C -0.740 4.740 15 S 2.620 3.380 16 O -0.903 6.903 17 O -0.929 6.929 18 C -0.180 4.180 19 C -0.014 4.014 20 N -0.327 5.327 21 C -0.367 4.367 22 H 0.110 0.890 23 C -0.175 4.175 24 N -0.551 5.551 25 Si 0.711 3.289 26 H -0.212 1.212 27 H -0.230 1.230 28 H -0.201 1.201 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.238 0.762 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.155 0.845 40 H 0.152 0.848 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.046 0.954 44 H 0.082 0.918 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.424 7.578 -24.928 26.613 hybrid contribution 0.426 0.200 0.306 0.562 sum 5.850 7.778 -24.622 26.475 Atomic orbital electron populations 1.22224 0.97010 1.01796 1.00647 1.21074 0.93010 0.95195 0.85830 0.93550 1.22279 0.97420 0.91144 0.86648 0.88129 1.45901 1.67897 1.15330 1.05898 1.19110 0.77972 0.87343 0.83364 1.90889 1.48582 1.18551 1.81918 1.30708 1.09626 1.10803 1.20484 0.82762 1.21298 0.88027 1.01963 1.02516 1.21717 1.03760 0.99025 0.93111 1.21322 0.90982 1.04509 0.98286 1.30369 1.08225 1.18266 1.17119 1.07766 0.75747 0.76965 0.77491 1.93598 1.81562 1.33385 1.81734 1.93598 1.27271 1.86535 1.85492 1.23143 0.97401 1.00236 0.97200 1.21967 0.95327 0.91174 0.92965 1.44821 1.57519 1.28901 1.01448 1.18567 1.42736 0.96794 0.78557 0.88960 1.24980 0.99995 0.97686 0.94806 1.69830 1.50621 1.34026 1.00645 0.87021 0.78310 0.87360 0.76233 1.21163 1.23014 1.20101 0.92885 0.91866 0.93926 0.76186 0.88788 0.88933 0.89085 0.90386 0.89437 0.89276 0.84507 0.84786 0.90994 0.90862 0.95367 0.91832 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.13 37.16 0.34 -2.48 16 2 C 0.16 2.89 3.48 -66.95 -0.23 2.66 16 3 H 0.05 0.81 7.71 -51.93 -0.40 0.41 16 4 C 0.13 2.13 2.80 -66.10 -0.18 1.95 16 5 H 0.10 1.81 7.33 -51.93 -0.38 1.42 16 6 N -0.70 -8.91 5.19 -52.03 -0.27 -9.18 16 7 C 0.54 7.21 6.96 -10.99 -0.08 7.14 16 8 O -0.52 -9.33 15.15 -9.59 -0.15 -9.48 16 9 C -0.61 -5.13 2.80 -27.86 -0.08 -5.20 16 10 H 0.15 0.70 8.14 -51.93 -0.42 0.27 16 11 C -0.10 -0.62 5.00 -26.93 -0.13 -0.75 16 12 C -0.14 -0.49 5.62 -27.16 -0.15 -0.64 16 13 C -0.11 -0.45 5.73 -26.92 -0.15 -0.60 16 14 C -0.61 -2.93 6.35 37.18 0.24 -2.69 16 15 S 2.44 24.87 4.31 -107.50 -0.46 24.41 16 16 O -0.91 -12.78 17.07 -64.34 -1.10 -13.88 16 17 O -0.93 -12.93 18.11 -57.82 -1.05 -13.98 16 18 C -0.14 -2.42 6.77 -24.59 -0.17 -2.58 16 19 C 0.11 2.39 4.69 -2.53 -0.01 2.38 16 20 N -0.60 -13.91 2.94 -162.57 -0.48 -14.39 16 21 C -0.24 -6.55 10.19 -15.06 -0.15 -6.70 16 22 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 23 C 0.02 0.69 5.43 -17.43 -0.09 0.60 16 24 N -0.91 -27.57 13.97 55.49 0.78 -26.79 16 25 Si 0.88 22.52 24.27 -169.99 -4.13 18.39 16 26 H -0.28 -7.01 6.48 56.52 0.37 -6.64 16 27 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 28 H -0.28 -7.01 6.66 56.52 0.38 -6.63 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 1.20 8.04 -51.93 -0.42 0.78 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.40 3.85 8.35 -40.82 -0.34 3.51 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.68 8.03 -51.93 -0.42 0.26 16 35 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.08 0.16 8.09 -51.93 -0.42 -0.26 16 37 H 0.09 0.39 8.02 -51.93 -0.42 -0.02 16 38 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.14 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.13 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.03 0.65 5.58 -51.93 -0.29 0.36 16 44 H 0.06 1.45 6.63 -51.93 -0.34 1.10 16 45 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 361.79 15.07 5.45 5.45 Total: -1.00 -38.22 361.79 -9.54 -47.76 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -7.27 Total: -1.39 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -0.87 Total: -6.94 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: 0.03 Total: -50.36 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -2.29 Total: -37.33 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.13 Total: 18.39 kcal Atomic # 16 Polarization: 24.87 SS G_CDS: -0.46 Total: 24.41 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -38.22 -9.54 -47.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088618778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.842 kcal (2) G-P(sol) polarization free energy of solvation -38.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds