Wall clock time and date at job start Tue Mar 31 2020 06:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.99364 * 2 1 4 4 C 1.54317 * 109.88564 * 238.90651 * 2 1 3 5 5 H 1.08999 * 110.87340 * 336.81995 * 4 2 1 6 6 N 1.46496 * 110.72590 * 100.02384 * 4 2 1 7 7 C 1.34777 * 120.00266 * 199.97934 * 6 4 2 8 8 O 1.21274 * 120.00135 * 0.27234 * 7 6 4 9 9 C 1.50706 * 119.99766 * 179.97438 * 7 6 4 10 10 H 1.09002 * 109.55190 * 335.18945 * 9 7 6 11 11 C 1.53032 * 109.54927 * 214.99587 * 9 7 6 12 12 C 1.52580 * 109.98719 * 176.49869 * 11 9 7 13 13 C 1.52583 * 110.64516 * 69.98843 * 12 11 9 14 14 C 1.53035 * 109.98554 * 290.01315 * 13 12 11 15 15 S 1.81674 * 108.99692 * 63.64908 * 14 13 12 16 16 O 1.42105 * 108.66269 * 191.37451 * 15 14 13 17 17 O 1.42095 * 108.66753 * 60.02853 * 15 14 13 18 18 C 1.55156 * 102.94192 * 218.38740 * 4 2 1 19 19 C 1.54908 * 101.58270 * 35.49905 * 18 4 2 20 20 N 1.47016 * 109.88470 * 121.09005 * 2 1 3 21 21 C 1.36939 * 125.65182 * 298.32837 * 20 2 1 22 22 H 1.07999 * 119.99797 * 0.02562 * 21 20 2 23 23 C 1.38811 * 120.00061 * 180.02562 * 21 20 2 24 24 N 1.31612 * 120.00068 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 120.00054 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46671 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.47178 * 119.99880 * 25 23 21 28 28 H 1.48491 * 109.47201 * 240.00247 * 25 23 21 29 29 H 1.09005 * 109.46447 * 181.09477 * 1 2 3 30 30 H 1.08994 * 109.47049 * 301.09663 * 1 2 3 31 31 H 1.08993 * 109.47102 * 61.09904 * 1 2 3 32 32 H 0.96999 * 119.99691 * 19.96920 * 6 4 2 33 33 H 1.09006 * 109.38624 * 296.65921 * 11 9 7 34 34 H 1.09009 * 109.38600 * 56.44291 * 11 9 7 35 35 H 1.09011 * 109.24077 * 190.28715 * 12 11 9 36 36 H 1.09000 * 109.24371 * 309.68446 * 12 11 9 37 37 H 1.09008 * 109.38540 * 50.17187 * 13 12 11 38 38 H 1.08997 * 109.38875 * 169.85233 * 13 12 11 39 39 H 1.09002 * 109.55002 * 183.49663 * 14 13 12 40 40 H 1.08999 * 109.55065 * 303.69702 * 14 13 12 41 41 H 1.09001 * 111.00644 * 153.57348 * 18 4 2 42 42 H 1.09004 * 111.00469 * 277.38736 * 18 4 2 43 43 H 1.09002 * 110.36919 * 81.83096 * 19 18 4 44 44 H 1.08995 * 110.36720 * 204.04277 * 19 18 4 45 45 H 0.97001 * 120.00396 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7494 -1.2427 5 1 1.3066 -1.4458 -1.6211 6 7 2.4556 0.1961 -2.2875 7 6 2.5560 -0.2160 -3.5668 8 8 2.3099 -1.3683 -3.8538 9 6 2.9676 0.7569 -4.6416 10 1 2.7205 1.7716 -4.3293 11 6 2.2294 0.4270 -5.9409 12 6 2.5725 1.4581 -7.0119 13 6 4.0194 1.2979 -7.4691 14 6 4.9718 1.7320 -6.3526 15 16 4.7567 0.6251 -4.9282 16 8 5.4381 1.1822 -3.8125 17 8 5.0554 -0.7031 -5.3352 18 6 3.2877 -1.5141 -0.6923 19 6 2.8147 -1.8793 0.7368 20 7 2.0301 -0.7139 1.1839 21 6 1.8050 -0.3555 2.4863 22 1 1.2142 0.5202 2.7109 23 6 2.3363 -1.1176 3.5176 24 7 3.0568 -2.1844 3.2439 25 14 2.0287 -0.6290 5.2942 26 1 1.1948 0.5992 5.3325 27 1 1.3200 -1.7299 5.9948 28 1 3.3262 -0.3681 5.9676 29 1 -0.3632 -1.0276 0.0196 30 1 -0.3633 0.5307 0.8799 31 1 -0.3633 0.4966 -0.8996 32 1 2.6484 1.1187 -2.0586 33 1 2.5265 -0.5639 -6.2843 34 1 1.1545 0.4398 -5.7597 35 1 1.9088 1.3233 -7.8662 36 1 2.4333 2.4594 -6.6044 37 1 4.2065 0.2534 -7.7185 38 1 4.1907 1.9150 -8.3510 39 1 6.0007 1.6737 -6.7076 40 1 4.7451 2.7566 -6.0577 41 1 3.4854 -2.4109 -1.2795 42 1 4.1657 -0.8688 -0.6609 43 1 2.1888 -2.7714 0.7130 44 1 3.6718 -2.0355 1.3918 45 1 3.4277 -2.7172 3.9646 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088618779.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:31 Heat of formation + Delta-G solvation = -82.704343 kcal Electronic energy + Delta-G solvation = -27575.799786 eV Core-core repulsion = 23721.252541 eV Total energy + Delta-G solvation = -3854.547244 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.05385 -37.99885 -37.38695 -36.81952 -36.25406 -34.14112 -32.57425 -31.85311 -30.38181 -28.99881 -28.11896 -25.18817 -24.05178 -23.86924 -21.43751 -20.97342 -20.19160 -19.82761 -19.04954 -17.63173 -17.16007 -16.84617 -16.68058 -15.95806 -15.83603 -15.24170 -14.73629 -14.55872 -14.30887 -14.17817 -14.00446 -13.76478 -13.40623 -13.33424 -12.80862 -12.37717 -12.26327 -12.24423 -12.15893 -12.04989 -11.99433 -11.78905 -11.59374 -11.40552 -11.14061 -10.96847 -10.86723 -10.86103 -10.63954 -10.56045 -10.41198 -10.06386 -9.84787 -9.74110 -9.56101 -8.76185 -8.63887 -6.87443 -5.64671 -3.08010 -0.43985 2.26619 2.55122 2.89627 3.40208 3.43593 3.45381 3.48097 3.58225 4.00334 4.08474 4.21561 4.31353 4.45752 4.48664 4.63151 4.79456 4.95163 5.06196 5.24536 5.31584 5.34838 5.41737 5.48722 5.52150 5.58040 5.62076 5.78141 5.79505 6.09898 6.22313 6.26637 6.31020 6.51048 6.57276 6.73640 6.82817 7.05625 7.48627 7.56633 7.63230 7.86758 8.14425 8.36025 9.20872 9.81726 10.45392 11.38682 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.025807 B = 0.002986 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.704476 B = 9373.904181 C = 9714.578744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.156 3.844 3 H 0.038 0.962 4 C 0.132 3.868 5 H 0.095 0.905 6 N -0.705 5.705 7 C 0.527 3.473 8 O -0.512 6.512 9 C -0.600 4.600 10 H 0.153 0.847 11 C -0.093 4.093 12 C -0.140 4.140 13 C -0.113 4.113 14 C -0.604 4.604 15 S 2.423 3.577 16 O -0.925 6.925 17 O -0.912 6.912 18 C -0.158 4.158 19 C 0.153 3.847 20 N -0.595 5.595 21 C -0.221 4.221 22 H 0.078 0.922 23 C -0.010 4.010 24 N -0.919 5.919 25 Si 0.914 3.086 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.290 1.290 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.037 0.963 32 H 0.402 0.598 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.016 0.984 44 H 0.111 0.889 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.233 10.964 -23.197 25.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.055 0.945 4 C 0.028 3.972 5 H 0.113 0.887 6 N -0.356 5.356 7 C 0.308 3.692 8 O -0.387 6.387 9 C -0.709 4.709 10 H 0.171 0.829 11 C -0.132 4.132 12 C -0.177 4.177 13 C -0.152 4.152 14 C -0.733 4.733 15 S 2.601 3.399 16 O -0.922 6.922 17 O -0.909 6.909 18 C -0.198 4.198 19 C 0.028 3.972 20 N -0.320 5.320 21 C -0.349 4.349 22 H 0.096 0.904 23 C -0.206 4.206 24 N -0.568 5.568 25 Si 0.745 3.255 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.217 1.217 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.237 0.763 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.156 0.844 40 H 0.154 0.846 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.034 0.966 44 H 0.128 0.872 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.712 9.546 -22.680 24.617 hybrid contribution -0.701 1.365 0.704 1.689 sum 0.011 10.911 -21.975 24.535 Atomic orbital electron populations 1.22246 0.97791 1.01510 0.99909 1.20979 0.92619 0.94859 0.86809 0.94488 1.22282 0.97960 0.90705 0.86210 0.88654 1.46122 1.68260 1.14532 1.06694 1.19085 0.79645 0.87771 0.82650 1.90766 1.48383 1.18020 1.81562 1.30478 1.27519 1.08630 1.04319 0.82883 1.21224 1.02135 1.00915 0.88877 1.21740 0.96432 0.99913 0.99657 1.21336 0.92776 1.03789 0.97251 1.30287 1.09381 1.16404 1.17262 1.08300 0.76857 0.77204 0.77540 1.93643 1.69378 1.80101 1.49094 1.93630 1.81126 1.33315 1.82809 1.23475 0.96779 0.99618 0.99934 1.21951 0.97430 0.88344 0.89425 1.44492 1.59239 1.28242 1.00037 1.19058 1.27206 1.08220 0.80431 0.90387 1.24798 1.00307 0.97386 0.98078 1.69802 1.39010 1.17863 1.30092 0.86002 0.77344 0.77495 0.84642 1.20569 1.21787 1.21739 0.92845 0.92610 0.94392 0.76346 0.88508 0.89114 0.89198 0.90556 0.89406 0.89277 0.84446 0.84639 0.91669 0.91577 0.96644 0.87182 0.93693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.14 37.16 0.34 -2.49 16 2 C 0.16 3.13 3.48 -66.96 -0.23 2.90 16 3 H 0.04 0.72 7.69 -51.93 -0.40 0.32 16 4 C 0.13 2.47 2.76 -66.10 -0.18 2.28 16 5 H 0.10 1.85 7.40 -51.93 -0.38 1.46 16 6 N -0.71 -10.63 5.20 -52.04 -0.27 -10.90 16 7 C 0.53 7.77 6.83 -10.98 -0.08 7.69 16 8 O -0.51 -9.43 16.06 5.56 0.09 -9.34 16 9 C -0.60 -5.71 2.81 -27.86 -0.08 -5.79 16 10 H 0.15 0.83 8.11 -51.93 -0.42 0.41 16 11 C -0.09 -0.72 4.61 -26.93 -0.12 -0.84 16 12 C -0.14 -0.61 5.63 -27.16 -0.15 -0.76 16 13 C -0.11 -0.52 5.73 -26.93 -0.15 -0.68 16 14 C -0.60 -3.22 6.35 37.18 0.24 -2.99 16 15 S 2.42 25.83 4.67 -107.50 -0.50 25.33 16 16 O -0.93 -12.90 18.10 -57.81 -1.05 -13.95 16 17 O -0.91 -13.38 17.92 -57.81 -1.04 -14.41 16 18 C -0.16 -3.32 6.77 -24.58 -0.17 -3.49 16 19 C 0.15 3.82 5.89 -2.53 -0.01 3.81 16 20 N -0.59 -14.96 3.13 -162.58 -0.51 -15.47 16 21 C -0.22 -6.03 9.89 -15.06 -0.15 -6.18 16 22 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 23 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 24 N -0.92 -26.85 10.09 55.49 0.56 -26.29 16 25 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.40 4.97 8.29 -40.82 -0.34 4.64 16 33 H 0.10 0.89 7.84 -51.93 -0.41 0.49 16 34 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 35 H 0.09 0.28 8.14 -51.92 -0.42 -0.14 16 36 H 0.08 0.21 8.09 -51.93 -0.42 -0.21 16 37 H 0.09 0.46 8.01 -51.92 -0.42 0.04 16 38 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.14 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.14 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.11 3.07 5.87 -51.93 -0.30 2.76 16 45 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 368.31 15.07 5.55 5.55 Total: -1.00 -36.87 368.31 -10.32 -47.19 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -7.28 Total: 2.24 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -0.85 Total: -6.91 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: -0.22 Total: -52.66 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -1.99 Total: -37.71 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 25.83 SS G_CDS: -0.50 Total: 25.33 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.87 -10.32 -47.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088618779.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.517 kcal (2) G-P(sol) polarization free energy of solvation -36.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds