Wall clock time and date at job start Tue Mar 31 2020 06:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.99573 * 2 1 4 4 C 1.54336 * 109.99625 * 238.96338 * 2 1 3 5 5 H 1.09001 * 110.51040 * 336.97589 * 4 2 1 6 6 N 1.46499 * 111.00420 * 100.12235 * 4 2 1 7 7 C 1.34771 * 120.00294 * 200.23526 * 6 4 2 8 8 O 1.21281 * 119.99627 * 0.02562 * 7 6 4 9 9 C 1.50700 * 120.00222 * 179.97438 * 7 6 4 10 10 C 1.52995 * 109.47364 * 180.02562 * 9 7 6 11 11 H 1.09004 * 110.00970 * 54.30011 * 10 9 7 12 12 C 1.53875 * 110.02961 * 175.68107 * 10 9 7 13 13 C 1.54166 * 108.70530 * 166.47371 * 12 10 9 14 14 S 1.82917 * 105.08655 * 332.09180 * 13 12 10 15 15 O 1.42093 * 109.35560 * 115.52249 * 14 13 12 16 16 O 1.42109 * 109.35412 * 248.59585 * 14 13 12 17 17 C 1.55046 * 110.02800 * 292.92511 * 10 9 7 18 18 C 1.55153 * 103.02397 * 218.66699 * 4 2 1 19 19 C 1.54909 * 101.58325 * 35.30227 * 18 4 2 20 20 N 1.47021 * 109.88391 * 121.09420 * 2 1 3 21 21 C 1.36930 * 125.64945 * 298.39821 * 20 2 1 22 22 H 1.08005 * 120.00414 * 342.77099 * 21 20 2 23 23 C 1.38811 * 120.00400 * 162.76935 * 21 20 2 24 24 N 1.31620 * 120.00091 * 332.03549 * 23 21 20 25 25 Si 1.86807 * 120.00221 * 152.02475 * 23 21 20 26 26 H 1.48498 * 109.46892 * 270.00316 * 25 23 21 27 27 H 1.48501 * 109.47027 * 150.00560 * 25 23 21 28 28 H 1.48498 * 109.46974 * 30.00517 * 25 23 21 29 29 H 1.09000 * 109.47257 * 300.35834 * 1 2 3 30 30 H 1.09001 * 109.47111 * 60.35829 * 1 2 3 31 31 H 1.09003 * 109.46676 * 180.35763 * 1 2 3 32 32 H 0.97005 * 119.99604 * 20.24279 * 6 4 2 33 33 H 1.09005 * 109.47327 * 300.00847 * 9 7 6 34 34 H 1.09000 * 109.46826 * 60.00154 * 9 7 6 35 35 H 1.09000 * 109.64767 * 286.32414 * 12 10 9 36 36 H 1.08995 * 109.64423 * 46.62177 * 12 10 9 37 37 H 1.09004 * 110.31876 * 90.99530 * 13 12 10 38 38 H 1.09002 * 110.31847 * 213.18903 * 13 12 10 39 39 H 1.08997 * 110.78877 * 316.54041 * 17 10 9 40 40 H 1.08998 * 110.79278 * 80.00351 * 17 10 9 41 41 H 1.09000 * 111.00328 * 277.23147 * 18 4 2 42 42 H 1.08998 * 111.03873 * 153.39486 * 18 4 2 43 43 H 1.08995 * 110.36977 * 204.15832 * 19 18 4 44 44 H 1.08996 * 110.45972 * 81.87753 * 19 18 4 45 45 H 0.97003 * 119.99245 * 353.95151 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0577 -0.7478 -1.2427 5 1 1.3054 -1.4406 -1.6196 6 7 2.4632 0.1938 -2.2892 7 6 2.5610 -0.2209 -3.5678 8 8 2.3129 -1.3735 -3.8521 9 6 2.9775 0.7478 -4.6444 10 6 3.0086 0.0280 -5.9941 11 1 2.0484 -0.4522 -6.1829 12 6 3.3272 1.0292 -7.1182 13 6 3.6868 0.2421 -8.3941 14 16 4.3753 -1.3439 -7.7970 15 8 3.5256 -2.4083 -8.2017 16 8 5.7643 -1.3954 -8.0928 17 6 4.1424 -1.0295 -6.0059 18 6 3.2864 -1.5183 -0.6915 19 6 2.8100 -1.8825 0.7369 20 7 2.0300 -0.7140 1.1839 21 6 1.8038 -0.3564 2.4862 22 1 1.4640 0.6415 2.7210 23 6 2.0112 -1.2764 3.5047 24 7 1.8810 -2.5640 3.2650 25 14 2.4752 -0.6871 5.2156 26 1 3.9537 -0.6044 5.3265 27 1 1.9557 -1.6431 6.2263 28 1 1.8850 0.6545 5.4540 29 1 -0.3634 0.5194 0.8867 30 1 -0.3633 0.5083 -0.8932 31 1 -0.3633 -1.0277 0.0064 32 1 2.6613 1.1158 -2.0618 33 1 2.2643 1.5710 -4.6884 34 1 3.9695 1.1385 -4.4177 35 1 2.4563 1.6566 -7.3079 36 1 4.1699 1.6547 -6.8238 37 1 2.7939 0.0652 -8.9939 38 1 4.4330 0.7838 -8.9754 39 1 5.0527 -0.6256 -5.5628 40 1 3.8299 -1.9377 -5.4905 41 1 4.1670 -0.8768 -0.6578 42 1 3.4814 -2.4155 -1.2789 43 1 3.6655 -2.0411 1.3933 44 1 2.1807 -2.7721 0.7134 45 1 1.5556 -2.8663 2.4027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088718891.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:08 Heat of formation + Delta-G solvation = -92.116325 kcal Electronic energy + Delta-G solvation = -26698.779520 eV Core-core repulsion = 22843.824142 eV Total energy + Delta-G solvation = -3854.955378 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -40.11789 -38.17392 -37.29998 -36.91388 -36.23569 -34.26289 -32.30738 -31.38729 -30.61575 -29.06388 -28.06033 -25.44105 -24.36584 -23.84100 -21.49062 -20.56048 -20.33411 -19.69153 -19.14233 -17.54816 -17.32218 -16.94713 -16.67387 -16.11280 -16.00461 -15.31986 -14.84660 -14.57543 -14.43410 -14.26096 -13.92549 -13.53725 -13.34036 -13.08952 -13.02631 -12.82374 -12.46216 -12.43812 -12.35243 -12.24877 -11.98913 -11.84676 -11.76094 -11.36167 -11.33497 -11.01380 -10.89688 -10.75324 -10.58896 -10.56441 -10.41248 -10.11153 -10.06044 -9.78153 -9.56144 -8.84259 -8.46113 -7.01828 -6.13078 -3.19472 -0.26190 2.22540 2.60126 3.07875 3.30204 3.48419 3.50585 3.65279 3.66983 3.92799 4.12356 4.16255 4.40010 4.44221 4.55025 4.69499 4.88450 4.98928 5.06410 5.12710 5.16499 5.22790 5.24985 5.27414 5.31143 5.40205 5.60976 5.63582 5.64582 5.92463 6.02375 6.08432 6.17422 6.31566 6.43602 6.47570 6.76869 6.90885 6.96452 7.02132 7.54501 7.75009 8.23077 8.44015 8.97540 9.76728 10.30804 11.19290 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.029753 B = 0.002322 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.846894 B =12057.103662 C =12401.150941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.155 3.845 3 H 0.037 0.963 4 C 0.135 3.865 5 H 0.093 0.907 6 N -0.716 5.716 7 C 0.510 3.490 8 O -0.539 6.539 9 C -0.128 4.128 10 C -0.074 4.074 11 H 0.105 0.895 12 C -0.111 4.111 13 C -0.595 4.595 14 S 2.383 3.617 15 O -0.936 6.936 16 O -0.944 6.944 17 C -0.579 4.579 18 C -0.144 4.144 19 C 0.145 3.855 20 N -0.594 5.594 21 C -0.335 4.335 22 H 0.065 0.935 23 C -0.024 4.024 24 N -0.916 5.916 25 Si 1.067 2.933 26 H -0.293 1.293 27 H -0.290 1.290 28 H -0.293 1.293 29 H 0.056 0.944 30 H 0.037 0.963 31 H 0.050 0.950 32 H 0.399 0.601 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.153 0.847 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.054 0.946 44 H 0.028 0.972 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.236 10.990 -21.805 24.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.047 3.953 3 H 0.054 0.946 4 C 0.030 3.970 5 H 0.111 0.889 6 N -0.366 5.366 7 C 0.295 3.705 8 O -0.416 6.416 9 C -0.169 4.169 10 C -0.094 4.094 11 H 0.123 0.877 12 C -0.150 4.150 13 C -0.724 4.724 14 S 2.567 3.433 15 O -0.933 6.933 16 O -0.941 6.941 17 C -0.709 4.709 18 C -0.183 4.183 19 C 0.019 3.981 20 N -0.320 5.320 21 C -0.463 4.463 22 H 0.083 0.917 23 C -0.227 4.227 24 N -0.556 5.556 25 Si 0.897 3.103 26 H -0.221 1.221 27 H -0.216 1.216 28 H -0.219 1.219 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.233 0.767 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.154 0.846 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.171 0.829 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.046 0.954 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.853 8.897 -20.882 23.023 hybrid contribution -0.776 1.698 -0.931 2.086 sum 3.077 10.595 -21.813 24.445 Atomic orbital electron populations 1.22195 0.97651 1.01370 1.00006 1.21054 0.92579 0.95005 0.86634 0.94576 1.22111 0.97081 0.91043 0.86726 0.88926 1.46066 1.69161 1.14197 1.07183 1.20493 0.77464 0.89090 0.83418 1.90694 1.49567 1.19240 1.82138 1.21616 1.04383 0.98498 0.92443 1.21611 0.99130 0.94036 0.94603 0.87671 1.21987 1.04476 0.98282 0.90208 1.30495 1.13500 1.21125 1.07274 1.09224 0.75697 0.78163 0.80184 1.93631 1.68425 1.50727 1.80533 1.93610 1.30600 1.86703 1.83159 1.30759 1.06952 1.09928 1.23241 1.23188 0.97197 0.99786 0.98170 1.21532 0.94882 0.90673 0.91040 1.44610 1.57478 1.29210 1.00727 1.19706 1.48017 0.97401 0.81131 0.91685 1.25746 1.00079 0.93970 1.02859 1.70749 1.44486 1.14703 1.25671 0.83478 0.76603 0.74547 0.75630 1.22088 1.21640 1.21926 0.92443 0.94444 0.93120 0.76696 0.88018 0.88173 0.88751 0.89465 0.84561 0.84468 0.84644 0.82903 0.91626 0.91490 0.92788 0.95402 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.14 37.16 0.34 -2.47 16 2 C 0.15 2.95 3.49 -66.95 -0.23 2.72 16 3 H 0.04 0.67 7.70 -51.93 -0.40 0.27 16 4 C 0.14 2.24 2.76 -66.09 -0.18 2.06 16 5 H 0.09 1.69 7.39 -51.93 -0.38 1.30 16 6 N -0.72 -8.72 5.21 -52.03 -0.27 -8.99 16 7 C 0.51 5.89 7.61 -10.99 -0.08 5.81 16 8 O -0.54 -8.31 14.12 5.56 0.08 -8.23 16 9 C -0.13 -0.81 5.18 -27.89 -0.14 -0.96 16 10 C -0.07 -0.47 2.21 -89.09 -0.20 -0.66 16 11 H 0.11 0.76 7.95 -51.93 -0.41 0.35 16 12 C -0.11 -0.39 5.75 -25.67 -0.15 -0.54 16 13 C -0.59 -2.51 7.26 37.77 0.27 -2.23 16 14 S 2.38 19.38 6.10 -107.50 -0.66 18.72 16 15 O -0.94 -11.63 18.14 -57.73 -1.05 -12.68 16 16 O -0.94 -10.90 18.15 -57.73 -1.05 -11.95 16 17 C -0.58 -4.39 6.09 38.24 0.23 -4.16 16 18 C -0.14 -2.60 6.77 -24.58 -0.17 -2.76 16 19 C 0.14 3.30 5.30 -2.53 -0.01 3.28 16 20 N -0.59 -14.27 3.02 -162.57 -0.49 -14.76 16 21 C -0.33 -9.06 9.62 -15.06 -0.14 -9.20 16 22 H 0.07 1.76 7.97 -52.48 -0.42 1.34 16 23 C -0.02 -0.68 5.09 -17.43 -0.09 -0.77 16 24 N -0.92 -27.25 12.93 55.49 0.72 -26.54 16 25 Si 1.07 24.93 30.00 -169.99 -5.10 19.83 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 29 H 0.06 1.13 8.02 -51.93 -0.42 0.71 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.40 3.81 8.33 -40.82 -0.34 3.47 16 33 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.10 0.44 8.10 -51.93 -0.42 0.01 16 35 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.09 0.18 8.10 -51.93 -0.42 -0.24 16 37 H 0.14 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.14 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.14 0.79 8.07 -51.93 -0.42 0.37 16 40 H 0.15 1.51 6.87 -51.93 -0.36 1.15 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.05 1.35 7.95 -51.93 -0.41 0.93 16 44 H 0.03 0.69 6.80 -51.93 -0.35 0.34 16 45 H 0.27 8.07 6.05 -40.82 -0.25 7.82 16 LS Contribution 369.72 15.07 5.57 5.57 Total: -1.00 -38.01 369.72 -9.98 -47.99 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -7.18 Total: 0.93 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -0.55 Total: -9.90 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: -0.04 Total: -50.29 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -2.02 Total: -32.86 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -5.10 Total: 19.83 kcal Atomic # 16 Polarization: 19.38 SS G_CDS: -0.66 Total: 18.72 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -38.01 -9.98 -47.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088718891.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.123 kcal (2) G-P(sol) polarization free energy of solvation -38.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds