Wall clock time and date at job start Tue Mar 31 2020 06:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.00193 * 2 1 4 4 C 1.54337 * 109.98801 * 238.95932 * 2 1 3 5 5 H 1.08992 * 110.67227 * 337.05428 * 4 2 1 6 6 N 1.46507 * 110.84792 * 100.19883 * 4 2 1 7 7 C 1.34768 * 120.00068 * 200.14550 * 6 4 2 8 8 O 1.21284 * 120.00395 * 359.97438 * 7 6 4 9 9 C 1.50703 * 120.00249 * 180.02562 * 7 6 4 10 10 C 1.52993 * 109.47282 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.01410 * 54.30081 * 10 9 7 12 12 C 1.53870 * 110.03074 * 292.91705 * 10 9 7 13 13 C 1.54191 * 108.69376 * 193.57580 * 12 10 9 14 14 S 1.82918 * 105.11076 * 27.83780 * 13 12 10 15 15 O 1.42101 * 109.35390 * 244.51841 * 14 13 12 16 16 O 1.42100 * 109.35353 * 111.31212 * 14 13 12 17 17 C 1.55052 * 110.02762 * 175.68027 * 10 9 7 18 18 C 1.55152 * 103.02236 * 218.66398 * 4 2 1 19 19 C 1.54914 * 101.57996 * 35.30939 * 18 4 2 20 20 N 1.47027 * 109.88296 * 121.09960 * 2 1 3 21 21 C 1.36934 * 125.64140 * 298.38813 * 20 2 1 22 22 H 1.07995 * 120.00501 * 347.64138 * 21 20 2 23 23 C 1.38812 * 119.99564 * 167.63709 * 21 20 2 24 24 N 1.31624 * 120.00240 * 325.95373 * 23 21 20 25 25 Si 1.86803 * 120.00093 * 145.95462 * 23 21 20 26 26 H 1.48494 * 109.47113 * 60.00150 * 25 23 21 27 27 H 1.48497 * 109.47007 * 300.00259 * 25 23 21 28 28 H 1.48500 * 109.46975 * 180.02562 * 25 23 21 29 29 H 1.09001 * 109.46655 * 300.36029 * 1 2 3 30 30 H 1.09000 * 109.47371 * 60.35453 * 1 2 3 31 31 H 1.09002 * 109.47359 * 180.35613 * 1 2 3 32 32 H 0.97002 * 119.99581 * 20.15043 * 6 4 2 33 33 H 1.09004 * 109.46925 * 300.00569 * 9 7 6 34 34 H 1.09000 * 109.46821 * 59.99752 * 9 7 6 35 35 H 1.09005 * 109.64977 * 313.38481 * 12 10 9 36 36 H 1.08999 * 109.64667 * 73.67570 * 12 10 9 37 37 H 1.08998 * 110.27239 * 268.94223 * 13 12 10 38 38 H 1.09004 * 110.42953 * 146.80930 * 13 12 10 39 39 H 1.09002 * 110.78838 * 279.99569 * 17 10 9 40 40 H 1.09003 * 110.79291 * 43.45067 * 17 10 9 41 41 H 1.09000 * 111.00983 * 277.23626 * 18 4 2 42 42 H 1.09003 * 111.00847 * 153.38257 * 18 4 2 43 43 H 1.09002 * 110.36822 * 204.15027 * 19 18 4 44 44 H 1.09009 * 110.45760 * 81.87674 * 19 18 4 45 45 H 0.96996 * 119.99645 * 354.25746 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0575 -0.7479 -1.2427 5 1 1.3066 -1.4405 -1.6225 6 7 2.4636 0.1967 -2.2864 7 6 2.5637 -0.2148 -3.5658 8 8 2.3181 -1.3672 -3.8532 9 6 2.9820 0.7567 -4.6393 10 6 3.0167 0.0399 -5.9905 11 1 2.0574 -0.4406 -6.1826 12 6 4.1429 -1.0085 -6.0021 13 6 4.3784 -1.4648 -7.4560 14 16 3.8827 -0.0392 -8.4893 15 8 2.7577 -0.3988 -9.2794 16 8 5.0348 0.5182 -9.1067 17 6 3.3396 1.0516 -7.1202 18 6 3.2863 -1.5184 -0.6916 19 6 2.8099 -1.8826 0.7368 20 7 2.0300 -0.7142 1.1839 21 6 1.8039 -0.3564 2.4862 22 1 1.3897 0.6143 2.7155 23 6 2.1068 -1.2415 3.5117 24 7 1.9605 -2.5366 3.3280 25 14 2.7222 -0.5947 5.1525 26 1 1.6996 0.3044 5.7451 27 1 3.9843 0.1598 4.9453 28 1 2.9724 -1.7341 6.0714 29 1 -0.3633 0.5194 0.8868 30 1 -0.3634 0.5083 -0.8931 31 1 -0.3634 -1.0276 0.0064 32 1 2.6604 1.1183 -2.0564 33 1 2.2686 1.5798 -4.6824 34 1 3.9735 1.1470 -4.4098 35 1 5.0573 -0.5686 -5.6039 36 1 3.8539 -1.8636 -5.3910 37 1 3.7587 -2.3318 -7.6848 38 1 5.4308 -1.6999 -7.6152 39 1 2.4491 1.6131 -7.4028 40 1 4.1429 1.7242 -6.8193 41 1 4.1669 -0.8770 -0.6580 42 1 3.4806 -2.4157 -1.2792 43 1 3.6655 -2.0413 1.3932 44 1 2.1805 -2.7723 0.7133 45 1 1.5631 -2.8682 2.5076 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088718892.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:17 Heat of formation + Delta-G solvation = -91.799585 kcal Electronic energy + Delta-G solvation = -26602.675065 eV Core-core repulsion = 22747.733421 eV Total energy + Delta-G solvation = -3854.941643 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -40.16783 -38.19458 -37.38940 -36.83870 -36.31374 -34.27102 -32.34906 -31.36761 -30.64004 -29.21023 -28.14525 -25.25096 -24.27368 -23.84984 -21.62081 -20.56719 -20.36125 -19.73629 -19.19233 -17.60001 -17.32401 -17.00539 -16.69720 -16.06157 -16.01266 -15.39191 -14.87681 -14.52301 -14.45143 -14.22082 -13.92343 -13.72117 -13.42104 -13.07607 -13.00616 -12.80939 -12.53046 -12.47434 -12.38269 -12.21634 -11.99645 -11.86247 -11.74710 -11.41610 -11.26875 -11.02340 -10.91624 -10.78823 -10.70734 -10.59787 -10.40738 -10.12970 -10.03792 -9.76893 -9.66196 -8.87025 -8.40736 -7.05990 -6.20478 -3.14760 -0.32653 2.13548 2.56488 3.06476 3.24601 3.46633 3.51560 3.61595 3.69095 3.88734 4.16827 4.20241 4.40168 4.49360 4.54321 4.68055 4.83588 4.90469 5.06700 5.08097 5.19988 5.23489 5.25669 5.30702 5.36349 5.38912 5.61014 5.66288 5.78558 5.90491 5.99987 6.05812 6.14693 6.29127 6.40960 6.45019 6.74223 6.88779 6.94098 6.99576 7.51602 7.72557 8.19435 8.42220 8.94139 9.75589 10.29846 11.14010 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.035773 B = 0.002183 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.533285 B =12824.782277 C =12983.704798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.155 3.845 3 H 0.038 0.962 4 C 0.135 3.865 5 H 0.093 0.907 6 N -0.715 5.715 7 C 0.510 3.490 8 O -0.541 6.541 9 C -0.129 4.129 10 C -0.072 4.072 11 H 0.105 0.895 12 C -0.116 4.116 13 C -0.587 4.587 14 S 2.386 3.614 15 O -0.938 6.938 16 O -0.943 6.943 17 C -0.588 4.588 18 C -0.143 4.143 19 C 0.145 3.855 20 N -0.593 5.593 21 C -0.342 4.342 22 H 0.067 0.933 23 C -0.021 4.021 24 N -0.906 5.906 25 Si 1.056 2.944 26 H -0.293 1.293 27 H -0.294 1.294 28 H -0.286 1.286 29 H 0.056 0.944 30 H 0.037 0.963 31 H 0.050 0.950 32 H 0.399 0.601 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.026 0.974 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.375 7.537 -20.245 22.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.048 3.952 3 H 0.055 0.945 4 C 0.031 3.969 5 H 0.111 0.889 6 N -0.365 5.365 7 C 0.295 3.705 8 O -0.418 6.418 9 C -0.170 4.170 10 C -0.092 4.092 11 H 0.124 0.876 12 C -0.155 4.155 13 C -0.717 4.717 14 S 2.570 3.430 15 O -0.936 6.936 16 O -0.940 6.940 17 C -0.718 4.718 18 C -0.182 4.182 19 C 0.019 3.981 20 N -0.319 5.319 21 C -0.469 4.469 22 H 0.085 0.915 23 C -0.223 4.223 24 N -0.546 5.546 25 Si 0.886 3.114 26 H -0.220 1.220 27 H -0.222 1.222 28 H -0.212 1.212 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.234 0.766 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.100 0.900 36 H 0.130 0.870 37 H 0.156 0.844 38 H 0.155 0.845 39 H 0.158 0.842 40 H 0.158 0.842 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.043 0.957 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.772 6.413 -19.842 21.392 hybrid contribution -0.627 0.870 -0.439 1.159 sum 4.145 7.284 -20.281 21.944 Atomic orbital electron populations 1.22211 0.97698 1.01355 1.00051 1.21038 0.92582 0.95039 0.86568 0.94486 1.22123 0.97078 0.90975 0.86764 0.88907 1.46081 1.69036 1.14227 1.07196 1.20525 0.77445 0.89080 0.83414 1.90688 1.49802 1.19296 1.82038 1.21649 1.04469 0.98606 0.92300 1.21593 1.01444 0.93184 0.92963 0.87643 1.22112 0.98764 1.00925 0.93672 1.30468 1.12391 1.18493 1.10371 1.09114 0.75900 0.79757 0.78214 1.93628 1.51574 1.82430 1.65930 1.93613 1.49614 1.76884 1.73884 1.30755 1.12774 1.12069 1.16156 1.23178 0.97211 0.99756 0.98091 1.21504 0.94985 0.90513 0.91110 1.44635 1.57716 1.28863 1.00707 1.19619 1.45974 1.00416 0.80921 0.91498 1.25650 1.00523 0.94136 1.02032 1.70794 1.42291 1.13876 1.27610 0.83648 0.76658 0.75177 0.75912 1.22040 1.22179 1.21157 0.92467 0.94395 0.93127 0.76631 0.87988 0.88168 0.90007 0.86989 0.84442 0.84455 0.84240 0.84216 0.91573 0.91497 0.92705 0.95656 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.14 37.16 0.34 -2.45 16 2 C 0.16 2.92 3.48 -66.94 -0.23 2.69 16 3 H 0.04 0.67 7.69 -51.93 -0.40 0.28 16 4 C 0.14 2.19 2.76 -66.09 -0.18 2.00 16 5 H 0.09 1.64 7.40 -51.93 -0.38 1.26 16 6 N -0.72 -8.50 5.21 -52.03 -0.27 -8.77 16 7 C 0.51 5.69 7.61 -10.99 -0.08 5.60 16 8 O -0.54 -7.92 13.97 5.55 0.08 -7.84 16 9 C -0.13 -0.84 5.19 -27.89 -0.14 -0.98 16 10 C -0.07 -0.47 2.22 -89.09 -0.20 -0.66 16 11 H 0.11 0.77 7.95 -51.93 -0.41 0.36 16 12 C -0.12 -0.79 5.33 -25.66 -0.14 -0.92 16 13 C -0.59 -3.35 7.26 37.78 0.27 -3.07 16 14 S 2.39 16.78 6.11 -107.50 -0.66 16.13 16 15 O -0.94 -10.25 18.15 -57.71 -1.05 -11.29 16 16 O -0.94 -9.84 18.15 -57.71 -1.05 -10.88 16 17 C -0.59 -2.68 6.67 38.24 0.26 -2.43 16 18 C -0.14 -2.50 6.77 -24.58 -0.17 -2.67 16 19 C 0.14 3.24 5.34 -2.53 -0.01 3.22 16 20 N -0.59 -14.06 3.06 -162.56 -0.50 -14.56 16 21 C -0.34 -9.18 9.56 -15.06 -0.14 -9.33 16 22 H 0.07 1.80 8.02 -52.49 -0.42 1.38 16 23 C -0.02 -0.57 4.95 -17.43 -0.09 -0.66 16 24 N -0.91 -26.66 12.88 55.49 0.71 -25.94 16 25 Si 1.06 24.60 30.03 -169.99 -5.10 19.50 16 26 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 29 H 0.06 1.11 8.02 -51.93 -0.42 0.70 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.40 3.76 8.32 -40.82 -0.34 3.42 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 0.44 8.08 -51.93 -0.42 0.03 16 35 H 0.08 0.43 8.05 -51.93 -0.42 0.01 16 36 H 0.11 1.02 6.54 -51.93 -0.34 0.68 16 37 H 0.14 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.14 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.14 0.38 8.10 -51.93 -0.42 -0.04 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.05 1.35 7.83 -51.93 -0.41 0.94 16 44 H 0.03 0.61 7.02 -51.92 -0.36 0.25 16 45 H 0.27 7.96 6.45 -40.82 -0.26 7.70 16 LS Contribution 369.78 15.07 5.57 5.57 Total: -1.00 -36.94 369.78 -9.96 -46.91 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -7.18 Total: 0.84 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -0.52 Total: -9.65 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -0.05 Total: -49.27 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -2.02 Total: -30.02 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.10 Total: 19.50 kcal Atomic # 16 Polarization: 16.78 SS G_CDS: -0.66 Total: 16.13 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.94 -9.96 -46.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088718892.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.894 kcal (2) G-P(sol) polarization free energy of solvation -36.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds