Wall clock time and date at job start Tue Mar 31 2020 06:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.00193 * 2 1 4 4 C 1.54337 * 109.98801 * 238.95932 * 2 1 3 5 5 H 1.08992 * 110.67227 * 337.05428 * 4 2 1 6 6 N 1.46507 * 110.84792 * 100.19883 * 4 2 1 7 7 C 1.34768 * 120.00068 * 200.14550 * 6 4 2 8 8 O 1.21284 * 120.00395 * 359.97438 * 7 6 4 9 9 C 1.50703 * 120.00249 * 180.02562 * 7 6 4 10 10 C 1.52993 * 109.47282 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.01410 * 54.30081 * 10 9 7 12 12 C 1.53870 * 110.03074 * 292.91705 * 10 9 7 13 13 C 1.54191 * 108.69376 * 193.57580 * 12 10 9 14 14 S 1.82918 * 105.11076 * 27.83780 * 13 12 10 15 15 O 1.42101 * 109.35390 * 244.51841 * 14 13 12 16 16 O 1.42100 * 109.35353 * 111.31212 * 14 13 12 17 17 C 1.55052 * 110.02762 * 175.68027 * 10 9 7 18 18 C 1.55152 * 103.02236 * 218.66398 * 4 2 1 19 19 C 1.54914 * 101.57996 * 35.30939 * 18 4 2 20 20 N 1.47027 * 109.88296 * 121.09960 * 2 1 3 21 21 C 1.36934 * 125.64140 * 298.38813 * 20 2 1 22 22 H 1.07995 * 120.00501 * 347.64138 * 21 20 2 23 23 C 1.38812 * 119.99564 * 167.63709 * 21 20 2 24 24 N 1.31624 * 120.00240 * 325.95373 * 23 21 20 25 25 Si 1.86803 * 120.00093 * 145.95462 * 23 21 20 26 26 H 1.48494 * 109.47113 * 60.00150 * 25 23 21 27 27 H 1.48497 * 109.47007 * 300.00259 * 25 23 21 28 28 H 1.48500 * 109.46975 * 180.02562 * 25 23 21 29 29 H 1.09001 * 109.46655 * 300.36029 * 1 2 3 30 30 H 1.09000 * 109.47371 * 60.35453 * 1 2 3 31 31 H 1.09002 * 109.47359 * 180.35613 * 1 2 3 32 32 H 0.97002 * 119.99581 * 20.15043 * 6 4 2 33 33 H 1.09004 * 109.46925 * 300.00569 * 9 7 6 34 34 H 1.09000 * 109.46821 * 59.99752 * 9 7 6 35 35 H 1.09005 * 109.64977 * 313.38481 * 12 10 9 36 36 H 1.08999 * 109.64667 * 73.67570 * 12 10 9 37 37 H 1.08998 * 110.27239 * 268.94223 * 13 12 10 38 38 H 1.09004 * 110.42953 * 146.80930 * 13 12 10 39 39 H 1.09002 * 110.78838 * 279.99569 * 17 10 9 40 40 H 1.09003 * 110.79291 * 43.45067 * 17 10 9 41 41 H 1.09000 * 111.00983 * 277.23626 * 18 4 2 42 42 H 1.09003 * 111.00847 * 153.38257 * 18 4 2 43 43 H 1.09002 * 110.36822 * 204.15027 * 19 18 4 44 44 H 1.09009 * 110.45760 * 81.87674 * 19 18 4 45 45 H 0.96996 * 119.99645 * 354.25746 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0575 -0.7479 -1.2427 5 1 1.3066 -1.4405 -1.6225 6 7 2.4636 0.1967 -2.2864 7 6 2.5637 -0.2148 -3.5658 8 8 2.3181 -1.3672 -3.8532 9 6 2.9820 0.7567 -4.6393 10 6 3.0167 0.0399 -5.9905 11 1 2.0574 -0.4406 -6.1826 12 6 4.1429 -1.0085 -6.0021 13 6 4.3784 -1.4648 -7.4560 14 16 3.8827 -0.0392 -8.4893 15 8 2.7577 -0.3988 -9.2794 16 8 5.0348 0.5182 -9.1067 17 6 3.3396 1.0516 -7.1202 18 6 3.2863 -1.5184 -0.6916 19 6 2.8099 -1.8826 0.7368 20 7 2.0300 -0.7142 1.1839 21 6 1.8039 -0.3564 2.4862 22 1 1.3897 0.6143 2.7155 23 6 2.1068 -1.2415 3.5117 24 7 1.9605 -2.5366 3.3280 25 14 2.7222 -0.5947 5.1525 26 1 1.6996 0.3044 5.7451 27 1 3.9843 0.1598 4.9453 28 1 2.9724 -1.7341 6.0714 29 1 -0.3633 0.5194 0.8868 30 1 -0.3634 0.5083 -0.8931 31 1 -0.3634 -1.0276 0.0064 32 1 2.6604 1.1183 -2.0564 33 1 2.2686 1.5798 -4.6824 34 1 3.9735 1.1470 -4.4098 35 1 5.0573 -0.5686 -5.6039 36 1 3.8539 -1.8636 -5.3910 37 1 3.7587 -2.3318 -7.6848 38 1 5.4308 -1.6999 -7.6152 39 1 2.4491 1.6131 -7.4028 40 1 4.1429 1.7242 -6.8193 41 1 4.1669 -0.8770 -0.6580 42 1 3.4806 -2.4157 -1.2792 43 1 3.6655 -2.0413 1.3932 44 1 2.1805 -2.7723 0.7133 45 1 1.5631 -2.8682 2.5076 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088718892.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:17 Heat of formation + Delta-G solvation = -120.433154 kcal Electronic energy + Delta-G solvation = -26603.916709 eV Core-core repulsion = 22747.733421 eV Total energy + Delta-G solvation = -3856.183288 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.14982 -39.53538 -38.06878 -37.56494 -36.98556 -35.67969 -33.95233 -32.25386 -31.97345 -30.47611 -29.14832 -26.54300 -25.70540 -25.00984 -22.58385 -21.81121 -21.61214 -20.90060 -19.79423 -19.27055 -18.26952 -17.64930 -17.61542 -17.05307 -16.67928 -16.25244 -16.04740 -15.85842 -15.57157 -15.31367 -14.97525 -14.90918 -14.64779 -14.47697 -14.28147 -13.63318 -13.43472 -13.34006 -13.19095 -13.08413 -13.06591 -12.95278 -12.69439 -12.57062 -12.47998 -12.27948 -12.20759 -12.09117 -11.89169 -11.73223 -11.68545 -11.60089 -11.54879 -11.30904 -10.68769 -10.43217 -10.00387 -9.03647 -8.35616 -5.25001 -0.84696 1.59221 1.63618 1.66521 1.72621 1.85340 2.17756 2.66450 2.70219 3.09126 3.15987 3.36241 3.46437 3.66597 3.73509 3.74903 3.79820 3.97547 4.03635 4.08446 4.14393 4.33515 4.37674 4.48406 4.50115 4.54437 4.71682 4.74999 4.80880 4.83453 4.87548 4.93064 4.94072 5.04478 5.08843 5.20151 5.23414 5.26963 5.33455 5.59915 5.72796 6.31170 6.64297 6.89142 7.34691 7.72792 8.31044 8.98938 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.035773 B = 0.002183 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.533285 B =12824.782277 C =12983.704798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.150 3.850 3 H 0.057 0.943 4 C 0.155 3.845 5 H 0.076 0.924 6 N -0.707 5.707 7 C 0.507 3.493 8 O -0.579 6.579 9 C -0.121 4.121 10 C -0.078 4.078 11 H 0.092 0.908 12 C -0.121 4.121 13 C -0.578 4.578 14 S 2.388 3.612 15 O -0.986 6.986 16 O -0.981 6.981 17 C -0.559 4.559 18 C -0.126 4.126 19 C 0.148 3.852 20 N -0.613 5.613 21 C -0.339 4.339 22 H 0.066 0.934 23 C -0.079 4.079 24 N -0.940 5.940 25 Si 1.109 2.891 26 H -0.275 1.275 27 H -0.280 1.280 28 H -0.297 1.297 29 H 0.039 0.961 30 H 0.075 0.925 31 H 0.027 0.973 32 H 0.416 0.584 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.136 0.864 38 H 0.152 0.848 39 H 0.160 0.840 40 H 0.171 0.829 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.023 0.977 44 H -0.003 1.003 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.263 10.657 -21.072 24.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.043 3.957 3 H 0.075 0.925 4 C 0.048 3.952 5 H 0.094 0.906 6 N -0.359 5.359 7 C 0.295 3.705 8 O -0.459 6.459 9 C -0.161 4.161 10 C -0.098 4.098 11 H 0.111 0.889 12 C -0.159 4.159 13 C -0.709 4.709 14 S 2.577 3.423 15 O -0.983 6.983 16 O -0.978 6.978 17 C -0.691 4.691 18 C -0.165 4.165 19 C 0.022 3.978 20 N -0.339 5.339 21 C -0.468 4.468 22 H 0.084 0.916 23 C -0.275 4.275 24 N -0.582 5.582 25 Si 0.934 3.066 26 H -0.201 1.201 27 H -0.207 1.207 28 H -0.224 1.224 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.047 0.953 32 H 0.253 0.747 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.121 0.879 36 H 0.105 0.895 37 H 0.155 0.845 38 H 0.170 0.830 39 H 0.178 0.822 40 H 0.189 0.811 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.042 0.958 44 H 0.015 0.985 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.661 9.587 -20.750 23.548 hybrid contribution -0.951 -0.104 -0.200 0.977 sum 4.711 9.483 -20.949 23.473 Atomic orbital electron populations 1.22105 0.97168 1.00184 1.01004 1.21260 0.92950 0.95581 0.85868 0.92504 1.21586 0.95671 0.91056 0.86873 0.90596 1.45896 1.69208 1.14233 1.06583 1.21423 0.76097 0.89369 0.83602 1.90698 1.51203 1.21442 1.82511 1.21740 1.06983 0.97715 0.89668 1.21620 1.00796 0.93594 0.93812 0.88933 1.22158 0.99873 1.00433 0.93457 1.30379 1.13331 1.17737 1.09477 1.08801 0.74481 0.80184 0.78812 1.93566 1.52841 1.83446 1.68477 1.93561 1.50773 1.77710 1.75754 1.30584 1.14590 1.11173 1.12787 1.23016 0.98250 1.00557 0.94684 1.21361 0.93299 0.89580 0.93556 1.44874 1.58403 1.29323 1.01315 1.19864 1.44384 0.99916 0.82593 0.91610 1.26970 1.01097 0.93921 1.05503 1.70917 1.44997 1.15082 1.27239 0.82940 0.77011 0.74572 0.72119 1.20051 1.20677 1.22351 0.94210 0.90649 0.95338 0.74663 0.84974 0.84877 0.87904 0.89487 0.84527 0.83000 0.82230 0.81137 0.90064 0.90892 0.95833 0.98513 0.93756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.12 9.14 71.98 0.66 -4.46 16 2 C 0.15 5.42 3.48 45.34 0.16 5.57 16 3 H 0.06 1.88 7.69 -2.39 -0.02 1.86 16 4 C 0.15 4.74 2.76 46.18 0.13 4.87 16 5 H 0.08 2.64 7.40 -2.39 -0.02 2.62 16 6 N -0.71 -14.26 5.21 -436.90 -2.27 -16.54 16 7 C 0.51 9.58 7.61 87.66 0.67 10.25 16 8 O -0.58 -16.00 13.97 -3.04 -0.04 -16.04 16 9 C -0.12 -0.94 5.19 29.85 0.16 -0.78 16 10 C -0.08 -0.73 2.22 -9.80 -0.02 -0.75 16 11 H 0.09 1.15 7.95 -2.39 -0.02 1.13 16 12 C -0.12 -1.33 5.33 31.29 0.17 -1.16 16 13 C -0.58 -5.77 7.26 72.39 0.53 -5.25 16 14 S 2.39 30.42 6.11 -56.49 -0.34 30.08 16 15 O -0.99 -21.47 18.15 -127.49 -2.31 -23.79 16 16 O -0.98 -19.43 18.15 -127.49 -2.31 -21.75 16 17 C -0.56 -2.77 6.67 72.68 0.48 -2.28 16 18 C -0.13 -4.30 6.77 31.99 0.22 -4.09 16 19 C 0.15 6.84 5.34 86.86 0.46 7.31 16 20 N -0.61 -29.28 3.06 -668.23 -2.04 -31.33 16 21 C -0.34 -18.34 9.56 84.03 0.80 -17.54 16 22 H 0.07 3.51 8.02 -2.91 -0.02 3.49 16 23 C -0.08 -4.41 4.95 84.86 0.42 -3.99 16 24 N -0.94 -57.44 12.88 21.65 0.28 -57.16 16 25 Si 1.11 50.04 30.03 68.60 2.06 52.11 16 26 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 27 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 28 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 29 H 0.04 1.51 8.02 -2.39 -0.02 1.49 16 30 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.42 5.81 8.32 -92.71 -0.77 5.04 16 33 H 0.13 0.35 8.14 -2.38 -0.02 0.33 16 34 H 0.13 0.27 8.08 -2.39 -0.02 0.25 16 35 H 0.10 0.69 8.05 -2.38 -0.02 0.67 16 36 H 0.09 1.48 6.54 -2.39 -0.02 1.47 16 37 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.15 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.16 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.17 -0.08 8.10 -2.39 -0.02 -0.10 16 41 H 0.08 2.54 8.14 -2.39 -0.02 2.53 16 42 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.02 1.20 7.83 -2.39 -0.02 1.18 16 44 H 0.00 -0.15 7.02 -2.38 -0.02 -0.16 16 45 H 0.25 15.80 6.45 -92.71 -0.60 15.20 16 Total: -1.00 -84.81 369.78 -1.78 -86.58 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.39 Total: 10.15 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: 4.83 Total: -12.31 kcal Atomic # 7 Polarization: -100.99 SS G_CDS: -4.04 Total: -105.03 kcal Atomic # 8 Polarization: -56.90 SS G_CDS: -4.67 Total: -61.57 kcal Atomic # 14 Polarization: 50.04 SS G_CDS: 2.06 Total: 52.11 kcal Atomic # 16 Polarization: 30.42 SS G_CDS: -0.34 Total: 30.08 kcal Total: -84.81 -1.78 -86.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088718892.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.851 kcal (2) G-P(sol) polarization free energy of solvation -84.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds