Wall clock time and date at job start Tue Mar 31 2020 06:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.87003 * 2 1 4 4 C 1.54327 * 109.87889 * 238.83036 * 2 1 3 5 5 H 1.09002 * 110.71986 * 336.75670 * 4 2 1 6 6 N 1.46497 * 110.72020 * 100.02372 * 4 2 1 7 7 C 1.34774 * 120.00364 * 204.99673 * 6 4 2 8 8 O 1.21282 * 119.99673 * 0.02562 * 7 6 4 9 9 C 1.50702 * 120.00368 * 180.02562 * 7 6 4 10 10 C 1.53001 * 109.47026 * 180.02562 * 9 7 6 11 11 H 1.09007 * 110.70275 * 55.70560 * 10 9 7 12 12 C 1.55051 * 110.78769 * 179.02057 * 10 9 7 13 13 C 1.54051 * 106.53840 * 160.52703 * 12 10 9 14 14 C 1.54164 * 108.85429 * 313.11403 * 13 12 10 15 15 S 1.82919 * 105.08902 * 27.78561 * 14 13 12 16 16 O 1.42101 * 109.35271 * 244.48071 * 15 14 13 17 17 O 1.42097 * 109.35401 * 111.27712 * 15 14 13 18 18 C 1.55158 * 102.94116 * 218.38889 * 4 2 1 19 19 C 1.54903 * 101.58055 * 35.50174 * 18 4 2 20 20 N 1.47016 * 109.88261 * 121.02298 * 2 1 3 21 21 C 1.36939 * 125.65098 * 298.31448 * 20 2 1 22 22 H 1.08002 * 119.99844 * 341.49965 * 21 20 2 23 23 C 1.38807 * 120.00220 * 161.49033 * 21 20 2 24 24 N 1.31619 * 120.00244 * 157.61411 * 23 21 20 25 25 Si 1.86806 * 119.99966 * 337.61332 * 23 21 20 26 26 H 1.48497 * 109.47000 * 84.53743 * 25 23 21 27 27 H 1.48500 * 109.47414 * 204.54010 * 25 23 21 28 28 H 1.48499 * 109.47120 * 324.53683 * 25 23 21 29 29 H 1.09005 * 109.46367 * 300.43213 * 1 2 3 30 30 H 1.08999 * 109.47297 * 180.43543 * 1 2 3 31 31 H 1.08995 * 109.47388 * 60.42953 * 1 2 3 32 32 H 0.97004 * 120.00105 * 25.00149 * 6 4 2 33 33 H 1.08996 * 109.47139 * 300.00625 * 9 7 6 34 34 H 1.08998 * 109.46726 * 60.00593 * 9 7 6 35 35 H 1.08997 * 110.03372 * 279.99534 * 12 10 9 36 36 H 1.09002 * 110.02196 * 41.41678 * 12 10 9 37 37 H 1.08994 * 109.66758 * 193.15220 * 13 12 10 38 38 H 1.08995 * 109.36038 * 72.88290 * 13 12 10 39 39 H 1.09010 * 110.31381 * 268.88453 * 14 13 12 40 40 H 1.08994 * 110.32155 * 146.69326 * 14 13 12 41 41 H 1.08995 * 110.99954 * 277.42611 * 18 4 2 42 42 H 1.08999 * 111.00096 * 153.57399 * 18 4 2 43 43 H 1.09000 * 110.36814 * 204.15140 * 19 18 4 44 44 H 1.09003 * 110.46002 * 81.87945 * 19 18 4 45 45 H 0.96996 * 120.00123 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7512 -1.2418 5 1 1.3050 -1.4480 -1.6164 6 7 2.4553 0.1930 -2.2878 7 6 2.4580 -0.1930 -3.5791 8 8 2.1284 -1.3220 -3.8751 9 6 2.8706 0.7782 -4.6551 10 6 2.7849 0.0931 -6.0205 11 1 1.7856 -0.3090 -6.1878 12 6 3.1801 1.0742 -7.1542 13 6 3.5435 0.2091 -8.3760 14 6 4.4795 -0.9281 -7.9205 15 16 4.0497 -1.2252 -6.1675 16 8 5.1646 -0.9017 -5.3480 17 8 3.4232 -2.4947 -6.0449 18 6 3.2876 -1.5152 -0.6905 19 6 2.8145 -1.8784 0.7391 20 7 2.0300 -0.7125 1.1848 21 6 1.8052 -0.3524 2.4867 22 1 1.4865 0.6524 2.7216 23 6 1.9866 -1.2788 3.5043 24 7 2.2079 -0.8691 4.7354 25 14 1.9166 -3.1069 3.1266 26 1 3.2469 -3.5655 2.6521 27 1 1.5455 -3.8526 4.3561 28 1 0.9018 -3.3559 2.0715 29 1 -0.3632 0.5206 0.8862 30 1 -0.3634 -1.0276 0.0078 31 1 -0.3634 0.5071 -0.8937 32 1 2.7187 1.0961 -2.0511 33 1 2.2055 1.6416 -4.6397 34 1 3.8948 1.1052 -4.4760 35 1 2.3409 1.7279 -7.3918 36 1 4.0421 1.6682 -6.8501 37 1 4.0481 0.8223 -9.1226 38 1 2.6340 -0.2136 -8.8027 39 1 5.5211 -0.6187 -8.0077 40 1 4.2997 -1.8259 -8.5118 41 1 4.1653 -0.8697 -0.6595 42 1 3.4851 -2.4127 -1.2766 43 1 3.6716 -2.0320 1.3947 44 1 2.1891 -2.7710 0.7182 45 1 2.3351 -1.5165 5.4465 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088773192.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:53 Heat of formation + Delta-G solvation = -80.376958 kcal Electronic energy + Delta-G solvation = -27331.525909 eV Core-core repulsion = 23477.079588 eV Total energy + Delta-G solvation = -3854.446321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -40.06613 -38.08309 -37.20166 -36.88669 -36.01909 -34.21890 -32.76372 -32.02763 -30.69436 -29.45543 -27.72720 -25.27593 -24.12867 -23.79983 -21.81455 -21.23538 -20.45566 -19.61035 -18.85638 -17.51790 -17.07955 -16.96021 -16.68546 -16.07784 -15.86382 -15.17832 -15.00258 -14.73760 -14.56132 -14.32577 -14.04147 -13.58361 -13.41666 -13.10058 -12.90596 -12.71996 -12.43172 -12.35748 -12.20570 -12.13292 -12.08435 -12.04892 -11.80383 -11.55774 -11.46436 -11.18121 -10.88485 -10.86793 -10.77112 -10.47804 -10.38906 -10.14207 -9.96947 -9.86409 -9.41981 -8.87515 -8.65161 -7.07341 -5.93915 -3.24840 -0.18808 2.36235 2.51828 3.03074 3.36083 3.39257 3.52332 3.55010 3.71020 3.97262 4.05908 4.19898 4.29491 4.47135 4.57135 4.63537 4.73901 4.89163 4.97218 5.06911 5.15347 5.16913 5.25218 5.27023 5.30367 5.34244 5.34778 5.47848 5.63335 5.87610 5.96037 6.04601 6.19419 6.29141 6.43013 6.45448 6.65684 6.75706 6.80113 6.96668 7.49067 7.70586 8.14892 8.31691 8.82947 9.69438 10.17005 11.21955 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.027819 B = 0.002919 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.279799 B = 9590.107849 C =10049.265860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.156 3.844 3 H 0.047 0.953 4 C 0.131 3.869 5 H 0.100 0.900 6 N -0.708 5.708 7 C 0.496 3.504 8 O -0.535 6.535 9 C -0.122 4.122 10 C -0.536 4.536 11 H 0.152 0.848 12 C -0.119 4.119 13 C -0.113 4.113 14 C -0.610 4.610 15 S 2.392 3.608 16 O -0.934 6.934 17 O -0.913 6.913 18 C -0.143 4.143 19 C 0.111 3.889 20 N -0.601 5.601 21 C -0.238 4.238 22 H 0.092 0.908 23 C 0.023 3.977 24 N -0.908 5.908 25 Si 0.881 3.119 26 H -0.284 1.284 27 H -0.303 1.303 28 H -0.276 1.276 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.040 0.960 32 H 0.403 0.597 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.028 0.972 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.810 7.081 -28.900 29.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.064 0.936 4 C 0.026 3.974 5 H 0.118 0.882 6 N -0.358 5.358 7 C 0.282 3.718 8 O -0.413 6.413 9 C -0.163 4.163 10 C -0.646 4.646 11 H 0.169 0.831 12 C -0.158 4.158 13 C -0.152 4.152 14 C -0.738 4.738 15 S 2.572 3.428 16 O -0.931 6.931 17 O -0.910 6.910 18 C -0.182 4.182 19 C -0.014 4.014 20 N -0.327 5.327 21 C -0.365 4.365 22 H 0.110 0.890 23 C -0.175 4.175 24 N -0.552 5.552 25 Si 0.711 3.289 26 H -0.211 1.211 27 H -0.231 1.231 28 H -0.201 1.201 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.237 0.763 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.119 0.881 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.153 0.847 40 H 0.154 0.846 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.046 0.954 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.922 5.589 -28.173 28.871 hybrid contribution -0.291 -0.133 -0.532 0.621 sum 2.631 5.456 -28.706 29.338 Atomic orbital electron populations 1.22210 0.97201 1.01577 1.00489 1.21083 0.92870 0.95235 0.85985 0.93578 1.22212 0.97301 0.91151 0.86728 0.88160 1.45936 1.67605 1.16408 1.05828 1.20673 0.78169 0.88877 0.84130 1.90856 1.47966 1.20270 1.82207 1.21370 1.05848 0.99452 0.89641 1.30262 1.18743 1.15254 1.00303 0.83057 1.22384 1.03838 0.97754 0.91805 1.21897 0.99192 0.95230 0.98864 1.30680 1.09398 1.08193 1.25505 1.09314 0.77544 0.77670 0.78276 1.93604 1.49672 1.85193 1.64603 1.93639 1.75860 1.36795 1.84692 1.23158 0.97610 1.00353 0.97079 1.21967 0.95277 0.91095 0.93089 1.44821 1.57535 1.28914 1.01463 1.18563 1.42622 0.96731 0.78617 0.88995 1.24976 1.00049 0.97680 0.94814 1.69832 1.50754 1.34004 1.00619 0.87018 0.78370 0.87402 0.76131 1.21115 1.23080 1.20139 0.91952 0.93024 0.94124 0.76260 0.86582 0.86798 0.88147 0.89299 0.88974 0.89688 0.84714 0.84563 0.90725 0.91066 0.91872 0.95413 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.14 37.16 0.34 -2.46 16 2 C 0.16 2.95 3.48 -66.95 -0.23 2.72 16 3 H 0.05 0.83 7.72 -51.93 -0.40 0.43 16 4 C 0.13 2.24 2.84 -66.10 -0.19 2.05 16 5 H 0.10 1.85 7.26 -51.93 -0.38 1.47 16 6 N -0.71 -9.39 5.18 -52.03 -0.27 -9.66 16 7 C 0.50 6.60 7.61 -10.99 -0.08 6.52 16 8 O -0.54 -9.28 14.01 -7.05 -0.10 -9.38 16 9 C -0.12 -0.99 5.05 -27.88 -0.14 -1.13 16 10 C -0.54 -4.00 2.70 -25.65 -0.07 -4.06 16 11 H 0.15 1.11 8.01 -51.93 -0.42 0.70 16 12 C -0.12 -0.44 5.93 -25.10 -0.15 -0.59 16 13 C -0.11 -0.40 6.39 -25.57 -0.16 -0.57 16 14 C -0.61 -3.37 7.26 37.77 0.27 -3.10 16 15 S 2.39 25.40 4.88 -107.50 -0.52 24.87 16 16 O -0.93 -12.69 17.27 -57.71 -1.00 -13.68 16 17 O -0.91 -14.11 17.25 -63.58 -1.10 -15.21 16 18 C -0.14 -2.66 6.77 -24.59 -0.17 -2.82 16 19 C 0.11 2.50 4.70 -2.53 -0.01 2.49 16 20 N -0.60 -14.31 2.94 -162.57 -0.48 -14.79 16 21 C -0.24 -6.64 10.17 -15.06 -0.15 -6.79 16 22 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 23 C 0.02 0.68 5.43 -17.43 -0.09 0.59 16 24 N -0.91 -27.99 13.97 55.49 0.78 -27.22 16 25 Si 0.88 22.99 24.27 -169.99 -4.13 18.86 16 26 H -0.28 -7.20 6.49 56.52 0.37 -6.83 16 27 H -0.30 -8.01 7.11 56.52 0.40 -7.60 16 28 H -0.28 -7.15 6.66 56.52 0.38 -6.77 16 29 H 0.06 1.19 8.03 -51.93 -0.42 0.78 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.40 4.11 8.37 -40.82 -0.34 3.77 16 33 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.11 0.78 7.65 -51.93 -0.40 0.38 16 35 H 0.10 0.21 8.14 -51.93 -0.42 -0.22 16 36 H 0.09 0.23 8.08 -51.93 -0.42 -0.19 16 37 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.13 0.56 8.14 -51.92 -0.42 0.14 16 40 H 0.14 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.06 1.50 6.64 -51.93 -0.34 1.16 16 44 H 0.03 0.66 5.57 -51.93 -0.29 0.37 16 45 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 362.60 15.07 5.46 5.46 Total: -1.00 -38.77 362.60 -9.44 -48.21 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -7.25 Total: -0.33 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -0.84 Total: -7.15 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: 0.03 Total: -51.67 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -2.19 Total: -38.26 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -4.13 Total: 18.86 kcal Atomic # 16 Polarization: 25.40 SS G_CDS: -0.52 Total: 24.87 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -38.77 -9.44 -48.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088773192.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.166 kcal (2) G-P(sol) polarization free energy of solvation -38.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds